Wall clock time and date at job start Mon Mar 30 2020 00:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46878 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00262 * 359.97438 * 13 12 11 15 15 N 1.34783 * 120.00007 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99907 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47059 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.52249 * 304.99572 * 17 16 15 19 19 C 1.53147 * 109.52664 * 184.86898 * 17 16 15 20 20 O 1.43082 * 109.14293 * 184.85614 * 19 17 16 21 21 C 1.43076 * 113.65476 * 57.84737 * 20 19 17 22 22 C 1.53140 * 109.14987 * 302.08361 * 21 20 19 23 23 O 1.43075 * 109.15080 * 55.31036 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 32 32 H 1.09002 * 109.47396 * 60.00115 * 12 11 10 33 33 H 0.97000 * 119.99712 * 359.97438 * 15 13 12 34 34 H 1.09004 * 109.46963 * 299.99625 * 16 15 13 35 35 H 1.09000 * 109.47731 * 59.99358 * 16 15 13 36 36 H 1.09003 * 109.52050 * 304.68267 * 19 17 16 37 37 H 1.08993 * 109.52249 * 64.87875 * 19 17 16 38 38 H 1.09001 * 109.52743 * 182.18047 * 21 20 19 39 39 H 1.08995 * 109.52442 * 61.98249 * 21 20 19 40 40 H 1.08996 * 109.52458 * 295.40943 * 22 21 20 41 41 H 1.09003 * 109.52526 * 175.21465 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7207 -7.4551 -0.0274 14 8 0.5079 -7.4551 -0.0275 15 7 2.3945 -8.6224 -0.0315 16 6 1.6620 -9.8910 -0.0378 17 6 2.6561 -11.0540 -0.0421 18 1 3.3414 -10.9442 -0.8826 19 6 1.8956 -12.3770 -0.1712 20 8 2.8209 -13.4627 -0.0605 21 6 3.5617 -13.4632 1.1635 22 6 4.3223 -12.1401 1.2909 23 8 3.3969 -11.0544 1.1819 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 0.8531 -5.0490 0.8724 30 1 0.8537 -5.0406 -0.9075 31 1 3.1015 -6.0883 -0.9108 32 1 3.1002 -6.0964 0.8692 33 1 3.3645 -8.6224 -0.0310 34 1 1.0342 -9.9525 0.8512 35 1 1.0363 -9.9450 -0.9287 36 1 1.1536 -12.4496 0.6239 37 1 1.3981 -12.4181 -1.1400 38 1 4.2700 -14.2917 1.1605 39 1 2.8764 -13.5717 2.0041 40 1 5.0637 -12.0681 0.4952 41 1 4.8207 -12.0982 2.2594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806538149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:54 Heat of formation + Delta-G solvation = -179.808025 kcal Electronic energy + Delta-G solvation = -20182.288158 eV Core-core repulsion = 16867.331366 eV Total energy + Delta-G solvation = -3314.956792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20138 -40.49532 -37.28996 -36.66798 -35.87614 -34.60075 -32.94363 -31.44142 -29.64203 -27.81901 -26.54454 -24.53358 -23.60072 -22.26907 -21.76318 -21.16848 -18.42383 -18.18534 -18.02552 -17.44950 -17.37440 -16.83494 -16.69040 -16.48528 -16.12412 -15.67972 -15.55102 -14.60116 -14.56520 -14.51312 -14.16465 -13.59143 -13.56170 -13.39390 -13.21195 -12.84731 -12.80572 -12.43697 -12.33347 -12.14508 -12.11699 -11.74607 -11.40192 -11.36500 -11.34734 -11.16315 -10.80786 -10.54326 -10.20656 -10.13547 -8.18035 -6.30139 1.40742 1.43182 1.54273 1.65136 2.12788 2.42609 2.54331 2.74467 3.14510 3.55959 3.69700 3.88371 3.90587 4.02640 4.09475 4.14404 4.16432 4.30262 4.41032 4.54317 4.58872 4.67114 4.70348 4.75897 4.85998 4.86614 4.88108 4.90733 5.20827 5.34302 5.34617 5.43271 5.58324 5.79272 5.89007 5.94953 5.98890 6.26148 6.53379 6.88324 7.26003 7.39288 8.94215 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.058853 B = 0.002295 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.646660 B =12199.990542 C =12528.107211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.512 3.488 14 O -0.588 6.588 15 N -0.715 5.715 16 C 0.128 3.872 17 C 0.052 3.948 18 H 0.088 0.912 19 C 0.032 3.968 20 O -0.394 6.394 21 C 0.017 3.983 22 C 0.022 3.978 23 O -0.392 6.392 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.015 1.015 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.417 0.583 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -29.313 0.667 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.167 4.167 13 C 0.300 3.700 14 O -0.468 6.468 15 N -0.368 5.368 16 C 0.004 3.996 17 C -0.006 4.006 18 H 0.106 0.894 19 C -0.046 4.046 20 O -0.313 6.313 21 C -0.059 4.059 22 C -0.055 4.055 23 O -0.312 6.312 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.052 -29.239 0.676 31.265 hybrid contribution 0.103 0.968 0.122 0.981 sum 11.155 -28.271 0.798 30.402 Atomic orbital electron populations 1.70137 1.08063 1.27733 1.51901 1.26115 0.95817 1.03792 0.94833 0.85366 0.78646 0.78001 0.78524 1.19679 1.20964 1.18328 1.21758 0.93743 0.92214 1.50182 0.91572 1.19066 0.94719 0.93824 0.94329 1.21449 0.97814 0.92745 1.01319 1.21247 0.97503 0.93630 1.01057 1.21666 0.98944 0.89464 1.06667 1.21187 0.87749 0.86652 0.74420 1.90697 1.16383 1.88384 1.51375 1.45791 1.11168 1.04662 1.75201 1.21275 0.93905 0.81486 1.02945 1.22931 0.94274 0.94877 0.88493 0.89431 1.23233 0.91389 0.85109 1.04832 1.88090 1.55468 1.47949 1.39834 1.23464 0.96261 0.99389 0.86822 1.23449 0.91439 0.85799 1.04779 1.88132 1.55410 1.49119 1.38558 0.92865 0.99744 0.99655 0.91990 0.92149 0.93967 0.93707 0.86199 0.86580 0.74596 0.92083 0.89305 0.91789 0.85850 0.85644 0.92075 0.91234 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.29 21.45 0.28 -59.20 16 2 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.99 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 11 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 12 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 13 C 0.51 14.04 7.83 87.66 0.69 14.72 16 14 O -0.59 -22.05 15.98 -3.04 -0.05 -22.10 16 15 N -0.72 -13.67 5.51 -463.05 -2.55 -16.22 16 16 C 0.13 2.23 5.35 86.38 0.46 2.69 16 17 C 0.05 0.68 2.87 30.64 0.09 0.77 16 18 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 19 C 0.03 0.39 6.34 72.03 0.46 0.84 16 20 O -0.39 -5.66 10.84 -136.00 -1.47 -7.14 16 21 C 0.02 0.16 7.05 72.03 0.51 0.67 16 22 C 0.02 0.20 7.05 72.03 0.51 0.71 16 23 O -0.39 -5.91 10.44 -136.00 -1.42 -7.33 16 24 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 25 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 26 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.36 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.04 1.78 8.10 -2.39 -0.02 1.77 16 31 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.42 5.61 8.47 -92.71 -0.79 4.82 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.13 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -78.20 341.16 1.05 -77.15 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.21 Total: 7.84 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.02 Total: -20.15 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.26 Total: -75.41 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -2.94 Total: -36.56 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -78.20 1.05 -77.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806538149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.658 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds