Wall clock time and date at job start Mon Mar 30 2020 02:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.45202 * 109.46867 * 180.02562 * 3 2 1 5 5 C 1.34232 * 116.99450 * 179.97438 * 4 3 2 6 6 O 1.20825 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99784 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.47248 * 59.99924 * 7 5 4 9 9 C 1.53005 * 109.47383 * 299.99904 * 7 5 4 10 10 N 1.46899 * 109.47076 * 180.02562 * 7 5 4 11 11 C 1.48535 * 110.99683 * 177.60622 * 10 7 5 12 12 C 1.54944 * 103.22541 * 159.72389 * 11 10 7 13 13 C 1.54598 * 102.91708 * 322.57803 * 12 11 10 14 14 O 1.42897 * 110.39494 * 262.99996 * 13 12 11 15 15 C 1.50705 * 110.30511 * 140.87452 * 13 12 11 16 16 H 1.07994 * 120.00083 * 244.28291 * 15 13 12 17 17 C 1.37881 * 119.99822 * 64.28668 * 15 13 12 18 18 N 1.31518 * 120.00010 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99909 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46838 * 60.00354 * 19 17 15 21 21 H 1.48501 * 109.46752 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47427 * 299.99749 * 19 17 15 23 23 C 1.47895 * 111.00061 * 294.99908 * 10 7 5 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09005 * 109.47002 * 59.99429 * 9 7 5 32 32 H 1.08995 * 109.47147 * 179.97438 * 9 7 5 33 33 H 1.09003 * 109.46945 * 300.00206 * 9 7 5 34 34 H 1.09001 * 110.66369 * 278.14714 * 11 10 7 35 35 H 1.08995 * 110.67428 * 41.28274 * 11 10 7 36 36 H 1.09001 * 110.71881 * 204.22776 * 12 11 10 37 37 H 1.09000 * 110.72802 * 80.93953 * 12 11 10 38 38 H 0.96698 * 114.00242 * 295.76622 * 14 13 12 39 39 H 0.96994 * 120.00128 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.91802 * 333.51105 * 23 10 7 41 41 H 1.09002 * 109.91813 * 94.60829 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1014 2.6385 -0.0012 6 8 3.4433 3.6518 -0.0017 7 6 5.6063 2.7174 -0.0013 8 1 5.9961 2.2229 -0.8911 9 6 6.1535 2.0245 1.2483 10 7 6.0228 4.1261 -0.0014 11 6 7.5023 4.2437 0.0564 12 6 7.7651 5.6759 -0.4732 13 6 6.7062 5.8315 -1.5888 14 8 7.2820 5.5463 -2.8652 15 6 6.1321 7.2248 -1.5744 16 1 5.0870 7.3759 -1.3484 17 6 6.9414 8.3067 -1.8498 18 7 8.2143 8.1227 -2.1246 19 14 6.2297 10.0337 -1.8326 20 1 5.6815 10.3297 -0.4846 21 1 7.2981 11.0125 -2.1579 22 1 5.1441 10.1319 -2.8411 23 6 5.6134 4.7998 -1.2528 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 5.8443 0.9792 1.2489 32 1 7.2419 2.0812 1.2480 33 1 5.7637 2.5191 2.1381 34 1 7.8565 4.1421 1.0823 35 1 7.9728 3.5023 -0.5893 36 1 8.7719 5.7568 -0.8831 37 1 7.6075 6.4133 0.3138 38 1 7.9771 6.1641 -3.1300 39 1 8.7835 8.8837 -2.3188 40 1 5.5319 4.0696 -2.0580 41 1 4.6566 5.3016 -1.1085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:49 Heat of formation + Delta-G solvation = -137.331855 kcal Electronic energy + Delta-G solvation = -21856.296774 eV Core-core repulsion = 18543.181887 eV Total energy + Delta-G solvation = -3313.114887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42645 -38.41868 -36.49813 -35.07581 -33.99327 -32.02277 -31.91105 -28.49900 -27.76952 -26.92541 -24.37143 -24.09496 -21.73981 -20.97422 -19.77853 -19.38031 -17.43545 -17.03630 -16.66503 -16.17807 -15.40762 -14.98929 -14.76624 -14.38773 -14.06271 -13.86910 -13.28474 -12.83584 -12.66077 -12.46904 -12.38612 -12.17394 -12.06246 -11.67525 -11.63898 -11.33777 -11.30377 -11.24768 -11.00784 -10.86280 -10.64536 -10.46983 -10.45647 -10.29263 -9.92817 -9.81854 -9.13104 -8.53254 -8.07202 -7.85710 -6.14856 -4.19922 2.49483 2.68575 3.30940 3.34176 3.39051 4.36535 4.45235 4.59554 4.68725 4.82214 5.09592 5.10107 5.15346 5.23751 5.27137 5.40187 5.43232 5.63035 5.68778 5.77309 5.82654 5.84413 5.94035 6.00176 6.08857 6.16243 6.23471 6.41530 6.52130 6.57433 7.02560 7.09373 7.27710 7.52624 7.58441 7.67092 7.88674 8.08301 8.22817 8.82078 9.46350 9.56886 10.92999 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.004487 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.245369 B = 6238.808150 C = 6900.586140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.065 3.935 4 O -0.364 6.364 5 C 0.464 3.536 6 O -0.480 6.480 7 C 0.083 3.917 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.497 5.497 11 C 0.034 3.966 12 C -0.118 4.118 13 C 0.243 3.757 14 O -0.595 6.595 15 C -0.525 4.525 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.057 3.943 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.384 0.616 39 H 0.267 0.733 40 H 0.030 0.970 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -14.963 5.232 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.009 4.009 4 O -0.281 6.281 5 C 0.304 3.696 6 O -0.365 6.365 7 C -0.027 4.027 8 H 0.092 0.908 9 C -0.196 4.196 10 N -0.224 5.224 11 C -0.093 4.093 12 C -0.157 4.157 13 C 0.203 3.797 14 O -0.406 6.406 15 C -0.564 4.564 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.070 4.070 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.415 -14.812 5.656 17.504 hybrid contribution 0.279 1.151 -0.722 1.387 sum -7.136 -13.662 4.934 16.183 Atomic orbital electron populations 1.21693 0.94322 1.02340 1.02403 1.21501 0.96005 0.94940 1.03583 1.23066 0.76980 0.98227 1.02644 1.86461 1.22902 1.34057 1.84715 1.23680 0.91807 0.81160 0.72917 1.90684 1.66608 1.36024 1.43147 1.21427 0.87328 0.93309 1.00670 0.90785 1.21785 1.01908 0.99748 0.96192 1.64760 1.11883 1.08131 1.37576 1.23349 0.86491 0.99623 0.99802 1.23001 1.00449 0.92260 0.99976 1.19359 0.87828 0.91716 0.80789 1.86080 1.58230 1.58234 1.38008 1.21687 0.96489 0.90914 1.47299 0.91932 1.25007 0.94733 0.99527 0.94107 1.69607 1.04701 1.31663 1.48325 0.86507 0.78646 0.83268 0.78724 1.20082 1.21256 1.20155 1.22959 1.00495 0.96164 0.87408 0.91801 0.92278 0.92326 0.90876 0.90852 0.91339 0.91334 0.91333 0.90951 0.91354 0.91162 0.94471 0.91413 0.91188 0.76475 0.92348 0.95203 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.06 6.31 -26.73 -0.17 -1.23 16 3 C 0.06 0.77 5.47 37.16 0.20 0.98 16 4 O -0.36 -5.24 10.12 -39.26 -0.40 -5.63 16 5 C 0.46 8.00 7.02 36.01 0.25 8.25 16 6 O -0.48 -9.88 14.45 -18.75 -0.27 -10.15 16 7 C 0.08 1.37 2.30 -68.86 -0.16 1.21 16 8 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 9 C -0.14 -1.78 8.92 37.16 0.33 -1.45 16 10 N -0.50 -10.05 4.85 -223.88 -1.09 -11.14 16 11 C 0.03 0.66 5.31 -1.89 -0.01 0.65 16 12 C -0.12 -2.76 5.49 -24.87 -0.14 -2.90 16 13 C 0.24 6.26 0.99 -90.41 -0.09 6.17 16 14 O -0.60 -15.89 12.93 -35.23 -0.46 -16.35 16 15 C -0.53 -14.72 8.10 -34.44 -0.28 -15.00 16 16 H 0.06 1.78 7.35 -52.49 -0.39 1.40 16 17 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 18 N -0.90 -24.48 10.88 55.43 0.60 -23.88 16 19 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.06 1.34 5.03 -2.76 -0.01 1.32 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.07 0.86 6.88 -51.93 -0.36 0.50 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.18 7.65 -51.93 -0.40 0.79 16 35 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 36 H 0.07 1.62 8.06 -51.93 -0.42 1.20 16 37 H 0.07 1.74 7.86 -51.93 -0.41 1.33 16 38 H 0.38 10.33 7.05 45.56 0.32 10.65 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.03 0.70 7.47 -51.93 -0.39 0.31 16 41 H 0.09 2.32 6.41 -51.93 -0.33 1.98 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -30.05 330.47 -7.58 -37.63 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.13 Total: 9.11 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 0.21 Total: -0.94 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.48 Total: -35.02 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.12 Total: -32.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.05 -7.58 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.702 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds