Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46813 * 2 1 4 4 O 1.45197 * 109.47357 * 179.97438 * 3 2 1 5 5 C 1.34226 * 117.00090 * 179.97438 * 4 3 2 6 6 O 1.20822 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99928 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.46651 * 330.17455 * 7 5 4 9 9 C 1.53000 * 109.47070 * 90.17062 * 7 5 4 10 10 N 1.46898 * 109.47071 * 210.17590 * 7 5 4 11 11 C 1.48526 * 111.00225 * 61.53229 * 10 7 5 12 12 C 1.54941 * 103.22843 * 159.71939 * 11 10 7 13 13 C 1.54594 * 102.91930 * 322.58667 * 12 11 10 14 14 O 1.42896 * 110.30983 * 140.87223 * 13 12 11 15 15 C 1.50702 * 110.30837 * 263.03858 * 13 12 11 16 16 H 1.08002 * 119.99893 * 22.38816 * 15 13 12 17 17 C 1.37879 * 120.00307 * 202.38909 * 15 13 12 18 18 N 1.31509 * 120.00271 * 171.66747 * 17 15 13 19 19 Si 1.86801 * 119.99653 * 351.66394 * 17 15 13 20 20 H 1.48504 * 109.46890 * 87.54483 * 19 17 15 21 21 H 1.48502 * 109.47285 * 207.54324 * 19 17 15 22 22 H 1.48499 * 109.47333 * 327.54982 * 19 17 15 23 23 C 1.47905 * 110.99754 * 178.92803 * 10 7 5 24 24 H 1.08998 * 109.47556 * 59.99942 * 1 2 3 25 25 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47442 * 299.99255 * 1 2 3 27 27 H 1.09000 * 109.46983 * 240.00838 * 2 1 3 28 28 H 1.08994 * 109.47085 * 119.99944 * 2 1 3 29 29 H 1.09010 * 109.46963 * 60.00157 * 3 2 1 30 30 H 1.09000 * 109.47605 * 300.00430 * 3 2 1 31 31 H 1.08996 * 109.47472 * 300.00795 * 9 7 5 32 32 H 1.08999 * 109.46497 * 59.99992 * 9 7 5 33 33 H 1.08998 * 109.47104 * 179.97438 * 9 7 5 34 34 H 1.09002 * 110.66856 * 41.28074 * 11 10 7 35 35 H 1.09006 * 110.81320 * 278.22221 * 11 10 7 36 36 H 1.08996 * 110.72405 * 204.22387 * 12 11 10 37 37 H 1.09001 * 110.72267 * 80.94002 * 12 11 10 38 38 H 0.96699 * 114.00061 * 58.89389 * 14 13 12 39 39 H 0.97002 * 119.99914 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.91376 * 94.79970 * 23 10 7 41 41 H 1.08995 * 109.91668 * 333.50643 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4919 1.4427 0.0006 5 6 4.1012 2.6387 0.0002 6 8 3.4430 3.6519 -0.0003 7 6 5.6062 2.7177 0.0002 8 1 6.0156 1.8465 0.5117 9 6 6.1153 2.7481 -1.4423 10 7 6.0324 3.9392 0.6959 11 6 5.5867 3.9280 2.1126 12 6 6.5292 4.9551 2.7890 13 6 7.8773 4.7111 2.0727 14 8 8.5439 5.9523 1.8341 15 6 8.7489 3.7977 2.8955 16 1 8.3028 3.1393 3.6262 17 6 10.1159 3.8025 2.7155 18 7 10.8901 3.1314 3.5399 19 14 10.8681 4.7622 1.3004 20 1 11.1168 6.1622 1.7287 21 1 12.1518 4.1312 0.9013 22 1 9.9337 4.7564 0.1462 23 6 7.5075 4.0379 0.7380 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6765 1.9564 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 5.7989 1.8418 -1.9585 32 1 5.7057 3.6192 -1.9538 33 1 7.2037 2.8057 -1.4423 34 1 5.7190 2.9383 2.5498 35 1 4.5476 4.2474 2.1943 36 1 6.6174 4.7531 3.8564 37 1 6.1789 5.9726 2.6155 38 1 8.7277 6.4606 2.6360 39 1 11.8518 3.1345 3.4130 40 1 7.8631 4.6444 -0.0949 41 1 7.9478 3.0419 0.6901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829974788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = -134.712703 kcal Electronic energy + Delta-G solvation = -21931.633333 eV Core-core repulsion = 18618.632021 eV Total energy + Delta-G solvation = -3313.001312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54496 -38.69813 -36.72000 -35.42449 -34.04690 -32.46726 -32.21510 -28.36590 -28.24208 -27.04875 -25.15851 -23.48641 -21.79311 -21.38806 -19.91129 -19.39854 -17.82582 -17.39810 -16.74649 -16.33792 -15.70661 -15.06974 -14.89979 -14.35286 -14.01401 -13.73228 -13.58951 -13.11995 -12.87076 -12.78414 -12.66871 -12.44715 -12.12773 -12.05412 -11.69990 -11.62178 -11.40797 -11.36961 -11.15040 -11.05232 -10.76285 -10.54473 -10.52018 -10.14628 -10.08292 -9.93714 -9.17439 -8.63746 -8.51882 -7.93567 -6.18669 -4.29233 2.34035 2.60847 3.46739 3.51841 3.68574 4.32892 4.50428 4.53483 4.63357 4.75974 5.02426 5.05873 5.11874 5.17970 5.27843 5.33861 5.34682 5.36330 5.44525 5.65119 5.71344 5.76121 5.78112 5.86305 5.93357 6.00285 6.20111 6.23244 6.39940 6.47594 6.60499 6.65213 6.73678 7.06992 7.17605 7.36409 7.64299 7.95035 8.16946 8.71146 8.86725 9.44427 10.90471 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031890 B = 0.004398 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.805308 B = 6365.710281 C = 6379.291594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.065 3.935 4 O -0.362 6.362 5 C 0.468 3.532 6 O -0.489 6.489 7 C 0.084 3.916 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.499 5.499 11 C 0.037 3.963 12 C -0.138 4.138 13 C 0.218 3.782 14 O -0.566 6.566 15 C -0.557 4.557 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.890 5.890 19 Si 0.939 3.061 20 H -0.288 1.288 21 H -0.323 1.323 22 H -0.267 1.267 23 C 0.052 3.948 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.371 0.629 39 H 0.266 0.734 40 H 0.076 0.924 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 -4.399 -7.321 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.009 4.009 4 O -0.279 6.279 5 C 0.309 3.691 6 O -0.374 6.374 7 C -0.026 4.026 8 H 0.094 0.906 9 C -0.197 4.197 10 N -0.226 5.226 11 C -0.090 4.090 12 C -0.176 4.176 13 C 0.178 3.822 14 O -0.373 6.373 15 C -0.594 4.594 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.525 5.525 19 Si 0.773 3.227 20 H -0.215 1.215 21 H -0.254 1.254 22 H -0.193 1.193 23 C -0.075 4.075 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.218 0.782 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.602 -3.938 -8.174 18.048 hybrid contribution 0.679 -0.092 0.440 0.814 sum -14.923 -4.030 -7.733 17.284 Atomic orbital electron populations 1.21691 0.94282 1.02431 1.02302 1.21515 0.96009 0.94867 1.03792 1.23080 0.76902 0.98395 1.02507 1.86509 1.23003 1.34043 1.84340 1.23725 0.91805 0.81103 0.72443 1.90635 1.66734 1.36231 1.43782 1.21425 0.86932 0.95301 0.98989 0.90609 1.21784 1.02813 1.02626 0.92522 1.64800 1.12065 1.31875 1.13834 1.23141 0.99193 0.98999 0.87713 1.23129 0.96439 0.98038 1.00041 1.19953 0.89049 0.82340 0.90863 1.86128 1.79214 1.34881 1.37099 1.21357 0.91635 1.23998 1.22399 0.90513 1.25108 0.97128 0.94608 0.96142 1.69981 1.04832 1.41504 1.36180 0.85870 0.75692 0.78492 0.82694 1.21539 1.25366 1.19254 1.23252 0.84181 1.00414 0.99662 0.92379 0.91722 0.92304 0.90793 0.90695 0.91343 0.91390 0.91590 0.91147 0.90279 0.93705 0.90990 0.90867 0.91706 0.78159 0.92490 0.90599 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -1.05 6.31 -26.73 -0.17 -1.22 16 3 C 0.07 0.73 5.47 37.16 0.20 0.94 16 4 O -0.36 -5.11 10.22 -39.25 -0.40 -5.51 16 5 C 0.47 7.61 6.34 36.01 0.23 7.84 16 6 O -0.49 -9.07 15.71 -18.75 -0.29 -9.36 16 7 C 0.08 1.38 2.25 -68.86 -0.15 1.23 16 8 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 9 C -0.14 -1.97 9.09 37.16 0.34 -1.63 16 10 N -0.50 -9.59 4.82 -223.88 -1.08 -10.67 16 11 C 0.04 0.70 5.73 -1.90 -0.01 0.69 16 12 C -0.14 -2.76 6.32 -24.87 -0.16 -2.92 16 13 C 0.22 4.96 0.84 -90.42 -0.08 4.88 16 14 O -0.57 -12.69 8.79 -35.23 -0.31 -13.00 16 15 C -0.56 -14.82 8.42 -34.44 -0.29 -15.11 16 16 H 0.08 2.23 8.04 -52.49 -0.42 1.80 16 17 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 18 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 19 Si 0.94 23.25 24.91 -169.99 -4.23 19.01 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.32 -8.15 7.11 56.52 0.40 -7.75 16 22 H -0.27 -6.46 5.59 56.52 0.32 -6.14 16 23 C 0.05 1.10 3.70 -2.75 -0.01 1.09 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.13 7.12 -51.93 -0.37 0.76 16 34 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 35 H 0.07 1.32 7.49 -51.93 -0.39 0.93 16 36 H 0.07 1.46 7.84 -51.93 -0.41 1.05 16 37 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 38 H 0.37 7.31 9.08 45.56 0.41 7.73 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 1.66 7.14 -51.93 -0.37 1.29 16 41 H 0.06 1.33 7.09 -51.93 -0.37 0.96 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -31.46 327.51 -6.62 -38.08 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.19 Total: 4.94 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 0.17 Total: -2.85 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.31 Total: -36.25 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -1.01 Total: -27.87 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.23 Total: 19.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.46 -6.62 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.628 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds