Wall clock time and date at job start Mon Mar 30 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46813 * 2 1 4 4 O 1.45197 * 109.47357 * 179.97438 * 3 2 1 5 5 C 1.34226 * 117.00090 * 179.97438 * 4 3 2 6 6 O 1.20822 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99928 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.46651 * 330.17455 * 7 5 4 9 9 C 1.53000 * 109.47070 * 90.17062 * 7 5 4 10 10 N 1.46898 * 109.47071 * 210.17590 * 7 5 4 11 11 C 1.48526 * 111.00225 * 61.53229 * 10 7 5 12 12 C 1.54941 * 103.22843 * 159.71939 * 11 10 7 13 13 C 1.54594 * 102.91930 * 322.58667 * 12 11 10 14 14 O 1.42896 * 110.30983 * 140.87223 * 13 12 11 15 15 C 1.50702 * 110.30837 * 263.03858 * 13 12 11 16 16 H 1.08002 * 119.99893 * 22.38816 * 15 13 12 17 17 C 1.37879 * 120.00307 * 202.38909 * 15 13 12 18 18 N 1.31509 * 120.00271 * 171.66747 * 17 15 13 19 19 Si 1.86801 * 119.99653 * 351.66394 * 17 15 13 20 20 H 1.48504 * 109.46890 * 87.54483 * 19 17 15 21 21 H 1.48502 * 109.47285 * 207.54324 * 19 17 15 22 22 H 1.48499 * 109.47333 * 327.54982 * 19 17 15 23 23 C 1.47905 * 110.99754 * 178.92803 * 10 7 5 24 24 H 1.08998 * 109.47556 * 59.99942 * 1 2 3 25 25 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47442 * 299.99255 * 1 2 3 27 27 H 1.09000 * 109.46983 * 240.00838 * 2 1 3 28 28 H 1.08994 * 109.47085 * 119.99944 * 2 1 3 29 29 H 1.09010 * 109.46963 * 60.00157 * 3 2 1 30 30 H 1.09000 * 109.47605 * 300.00430 * 3 2 1 31 31 H 1.08996 * 109.47472 * 300.00795 * 9 7 5 32 32 H 1.08999 * 109.46497 * 59.99992 * 9 7 5 33 33 H 1.08998 * 109.47104 * 179.97438 * 9 7 5 34 34 H 1.09002 * 110.66856 * 41.28074 * 11 10 7 35 35 H 1.09006 * 110.81320 * 278.22221 * 11 10 7 36 36 H 1.08996 * 110.72405 * 204.22387 * 12 11 10 37 37 H 1.09001 * 110.72267 * 80.94002 * 12 11 10 38 38 H 0.96699 * 114.00061 * 58.89389 * 14 13 12 39 39 H 0.97002 * 119.99914 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.91376 * 94.79970 * 23 10 7 41 41 H 1.08995 * 109.91668 * 333.50643 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4919 1.4427 0.0006 5 6 4.1012 2.6387 0.0002 6 8 3.4430 3.6519 -0.0003 7 6 5.6062 2.7177 0.0002 8 1 6.0156 1.8465 0.5117 9 6 6.1153 2.7481 -1.4423 10 7 6.0324 3.9392 0.6959 11 6 5.5867 3.9280 2.1126 12 6 6.5292 4.9551 2.7890 13 6 7.8773 4.7111 2.0727 14 8 8.5439 5.9523 1.8341 15 6 8.7489 3.7977 2.8955 16 1 8.3028 3.1393 3.6262 17 6 10.1159 3.8025 2.7155 18 7 10.8901 3.1314 3.5399 19 14 10.8681 4.7622 1.3004 20 1 11.1168 6.1622 1.7287 21 1 12.1518 4.1312 0.9013 22 1 9.9337 4.7564 0.1462 23 6 7.5075 4.0379 0.7380 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6765 1.9564 0.8901 30 1 1.6765 1.9564 -0.8899 31 1 5.7989 1.8418 -1.9585 32 1 5.7057 3.6192 -1.9538 33 1 7.2037 2.8057 -1.4423 34 1 5.7190 2.9383 2.5498 35 1 4.5476 4.2474 2.1943 36 1 6.6174 4.7531 3.8564 37 1 6.1789 5.9726 2.6155 38 1 8.7277 6.4606 2.6360 39 1 11.8518 3.1345 3.4130 40 1 7.8631 4.6444 -0.0949 41 1 7.9478 3.0419 0.6901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829974788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:52 Heat of formation + Delta-G solvation = -157.527936 kcal Electronic energy + Delta-G solvation = -21932.622676 eV Core-core repulsion = 18618.632021 eV Total energy + Delta-G solvation = -3313.990655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81939 -40.26415 -37.99039 -37.00128 -34.83632 -34.43885 -33.78709 -30.08930 -29.76286 -27.94532 -26.86866 -24.89057 -22.94404 -22.47114 -21.40827 -21.01206 -19.61711 -18.82611 -17.93931 -17.53988 -17.25305 -16.97771 -15.99029 -15.80225 -15.52156 -15.11460 -14.96273 -14.72249 -14.50310 -13.94194 -13.80520 -13.66252 -13.37456 -13.29559 -13.19634 -13.05234 -12.77477 -12.63581 -12.45882 -12.19580 -12.14317 -12.08237 -11.98450 -11.84915 -11.47647 -11.30916 -11.17038 -10.69289 -10.36526 -9.51442 -8.34988 -6.47197 1.06504 1.45178 1.49739 1.52601 1.71509 2.44538 2.89325 2.98715 3.46506 3.64484 3.82593 3.86078 3.90828 3.93812 4.02985 4.16185 4.25205 4.36142 4.50402 4.52962 4.54083 4.62800 4.72679 4.76117 4.78626 4.92710 5.04002 5.04632 5.08799 5.12507 5.15382 5.23061 5.37947 5.38605 5.43779 5.79815 5.87216 6.07066 6.60002 6.71204 7.02827 7.31897 8.77957 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031890 B = 0.004398 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.805308 B = 6365.710281 C = 6379.291594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.058 3.942 4 O -0.361 6.361 5 C 0.476 3.524 6 O -0.515 6.515 7 C 0.076 3.924 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.502 5.502 11 C 0.042 3.958 12 C -0.132 4.132 13 C 0.213 3.787 14 O -0.569 6.569 15 C -0.550 4.550 16 H 0.042 0.958 17 C 0.029 3.971 18 N -0.935 5.935 19 Si 0.994 3.006 20 H -0.281 1.281 21 H -0.331 1.331 22 H -0.256 1.256 23 C 0.061 3.939 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.382 0.618 39 H 0.267 0.733 40 H 0.075 0.925 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.608 -4.278 -8.796 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.015 4.015 4 O -0.278 6.278 5 C 0.318 3.682 6 O -0.402 6.402 7 C -0.034 4.034 8 H 0.096 0.904 9 C -0.193 4.193 10 N -0.229 5.229 11 C -0.086 4.086 12 C -0.170 4.170 13 C 0.173 3.827 14 O -0.377 6.377 15 C -0.587 4.587 16 H 0.060 0.940 17 C -0.171 4.171 18 N -0.573 5.573 19 Si 0.826 3.174 20 H -0.208 1.208 21 H -0.262 1.262 22 H -0.181 1.181 23 C -0.067 4.067 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.231 0.769 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.993 -3.822 -9.646 19.910 hybrid contribution 1.005 -0.198 0.961 1.404 sum -15.988 -4.021 -8.685 18.634 Atomic orbital electron populations 1.21695 0.92714 1.03450 1.02584 1.21540 0.97203 0.92854 1.04055 1.23407 0.75110 1.00436 1.02583 1.86499 1.24794 1.32764 1.83721 1.23556 0.91570 0.81291 0.71785 1.90625 1.67221 1.37134 1.45222 1.21564 0.87535 0.94105 1.00147 0.90367 1.21794 1.02555 1.03925 0.91021 1.64770 1.10473 1.33759 1.13865 1.23096 0.99374 0.98419 0.87664 1.23035 0.95129 0.99214 0.99620 1.19907 0.89444 0.81837 0.91514 1.86087 1.79216 1.34454 1.37975 1.21547 0.92024 1.23575 1.21594 0.93995 1.25806 0.97703 0.95580 0.98026 1.70087 1.05185 1.43852 1.38198 0.84966 0.74665 0.77346 0.80415 1.20804 1.26219 1.18124 1.23001 0.85663 0.99559 0.98453 0.91903 0.90337 0.92271 0.90183 0.90798 0.91676 0.90978 0.88910 0.91397 0.90509 0.94235 0.90049 0.91270 0.90230 0.76874 0.92430 0.90723 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.77 6.31 30.59 0.19 -1.58 16 3 C 0.06 1.21 5.47 71.98 0.39 1.60 16 4 O -0.36 -9.61 10.22 -51.38 -0.53 -10.13 16 5 C 0.48 14.74 6.34 71.24 0.45 15.19 16 6 O -0.51 -18.37 15.71 21.98 0.35 -18.02 16 7 C 0.08 2.40 2.25 44.17 0.10 2.50 16 8 H 0.08 2.44 8.00 -2.38 -0.02 2.42 16 9 C -0.14 -3.54 9.09 71.98 0.65 -2.88 16 10 N -0.50 -18.56 4.82 -862.22 -4.16 -22.72 16 11 C 0.04 1.55 5.73 86.65 0.50 2.04 16 12 C -0.13 -5.11 6.32 31.80 0.20 -4.91 16 13 C 0.21 9.47 0.84 -10.66 -0.01 9.46 16 14 O -0.57 -24.36 8.79 -148.98 -1.31 -25.67 16 15 C -0.55 -29.48 8.42 25.60 0.22 -29.27 16 16 H 0.04 2.50 8.04 -2.91 -0.02 2.48 16 17 C 0.03 1.61 5.45 84.66 0.46 2.07 16 18 N -0.94 -56.38 13.96 21.45 0.30 -56.09 16 19 Si 0.99 47.45 24.91 68.60 1.71 49.16 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.33 -16.13 7.11 99.48 0.71 -15.42 16 22 H -0.26 -11.69 5.59 99.48 0.56 -11.13 16 23 C 0.06 2.51 3.70 86.44 0.32 2.83 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.04 7.12 -2.39 -0.02 2.02 16 34 H 0.04 1.48 7.98 -2.39 -0.02 1.46 16 35 H 0.08 2.87 7.49 -2.38 -0.02 2.85 16 36 H 0.07 2.71 7.84 -2.39 -0.02 2.69 16 37 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 38 H 0.38 14.33 9.08 -74.06 -0.67 13.66 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.07 3.11 7.14 -2.38 -0.02 3.10 16 41 H 0.05 2.16 7.09 -2.39 -0.02 2.14 16 Total: -1.00 -66.23 327.51 0.74 -65.49 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.18 Total: 21.81 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.19 Total: -3.83 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.86 Total: -78.81 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -1.49 Total: -53.82 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.71 Total: 49.16 kcal Total: -66.23 0.74 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829974788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.036 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds