Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.45196 * 109.47382 * 180.02562 * 4 3 2 6 6 C 1.34229 * 116.99841 * 180.02562 * 5 4 3 7 7 O 1.20828 * 120.00266 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99734 * 179.97438 * 6 5 4 9 9 N 1.46906 * 109.47140 * 179.97438 * 8 6 5 10 10 C 1.47442 * 110.99804 * 69.87738 * 9 8 6 11 11 C 1.54312 * 107.23644 * 123.25772 * 10 9 8 12 12 C 1.55138 * 103.01912 * 22.28235 * 11 10 9 13 13 O 1.42904 * 110.99320 * 82.47387 * 12 11 10 14 14 C 1.50702 * 110.99233 * 206.25815 * 12 11 10 15 15 H 1.07998 * 120.00017 * 118.54685 * 14 12 11 16 16 C 1.37879 * 119.99634 * 298.54559 * 14 12 11 17 17 N 1.31513 * 120.00155 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99753 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47368 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47263 * 119.99785 * 18 16 14 21 21 H 1.48499 * 109.46862 * 239.99546 * 18 16 14 22 22 C 1.47847 * 110.99842 * 190.71603 * 9 8 6 23 23 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46575 * 300.00366 * 1 2 3 25 25 H 1.09000 * 109.47309 * 59.99403 * 1 2 3 26 26 H 1.08997 * 109.46683 * 240.00113 * 2 1 3 27 27 H 1.08991 * 109.46921 * 120.00092 * 2 1 3 28 28 H 1.09001 * 109.46960 * 59.99966 * 3 2 1 29 29 H 1.09003 * 109.46861 * 300.00084 * 3 2 1 30 30 H 1.09005 * 109.47379 * 59.99413 * 4 3 2 31 31 H 1.09000 * 109.46977 * 300.00405 * 4 3 2 32 32 H 1.09004 * 109.47103 * 59.99845 * 8 6 5 33 33 H 1.09000 * 109.47247 * 299.99723 * 8 6 5 34 34 H 1.09006 * 109.88330 * 242.66447 * 10 9 8 35 35 H 1.09000 * 109.89076 * 3.84546 * 10 9 8 36 36 H 1.09002 * 110.70928 * 140.66469 * 11 10 9 37 37 H 1.09005 * 110.70652 * 263.89896 * 11 10 9 38 38 H 0.96700 * 113.99799 * 61.45632 * 13 12 11 39 39 H 0.97002 * 120.00263 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.37862 * 332.46576 * 22 9 8 41 41 H 1.08997 * 110.37468 * 94.81071 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0541 2.8114 0.0000 6 6 5.3848 2.9871 -0.0010 7 8 6.1209 2.0289 -0.0019 8 6 5.9609 4.3797 -0.0011 9 7 7.4279 4.3028 -0.0016 10 6 7.9303 3.8024 -1.2943 11 6 8.9053 4.8628 -1.8474 12 6 9.3360 5.6390 -0.5751 13 8 10.3846 4.9535 0.1124 14 6 9.7486 7.0478 -0.9159 15 1 9.2081 7.8846 -0.4988 16 6 10.8161 7.2683 -1.7602 17 7 11.4745 6.2493 -2.2677 18 14 11.3279 9.0145 -2.1821 19 1 10.4331 9.9743 -1.4871 20 1 12.7295 9.2387 -1.7456 21 1 11.2279 9.2188 -3.6496 22 6 8.0281 5.6294 0.2550 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9331 0.9287 -0.8908 31 1 3.9337 0.9284 0.8891 32 1 5.6256 4.9116 0.8894 33 1 5.6243 4.9121 -0.8906 34 1 8.4539 2.8576 -1.1480 35 1 7.0998 3.6651 -1.9869 36 1 9.7656 4.3871 -2.3183 37 1 8.3976 5.5245 -2.5492 38 1 11.1936 4.8501 -0.4071 39 1 12.2258 6.4044 -2.8614 40 1 7.3586 6.4205 -0.0825 41 1 8.2509 5.7463 1.3155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829975395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = -163.092967 kcal Electronic energy + Delta-G solvation = -21107.229121 eV Core-core repulsion = 17792.997148 eV Total energy + Delta-G solvation = -3314.231973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59902 -39.97877 -37.86497 -36.39626 -35.90143 -34.17044 -32.20071 -30.53799 -29.94073 -28.25892 -26.13111 -24.54154 -22.54295 -22.10838 -21.47140 -21.31119 -19.02608 -18.60679 -17.87825 -17.33738 -16.99150 -16.84990 -16.31663 -15.98509 -15.73607 -14.92439 -14.69987 -14.44854 -14.28051 -14.00015 -13.88129 -13.50618 -13.15694 -13.02325 -12.94564 -12.90744 -12.75129 -12.56916 -12.26969 -12.21553 -12.20433 -11.99798 -11.75382 -11.72318 -11.41410 -11.38188 -11.10852 -10.60476 -10.07641 -9.26976 -8.20122 -6.36254 1.19888 1.41232 1.44786 1.52689 1.55716 2.39723 3.02158 3.11599 3.61768 3.87633 3.91838 3.95557 4.04707 4.09122 4.19084 4.30820 4.33073 4.35841 4.43348 4.43899 4.58954 4.71445 4.85294 4.87978 4.88962 4.99909 5.06966 5.19234 5.24232 5.30616 5.40288 5.45860 5.46752 5.54438 5.78788 5.88360 6.04477 6.19485 6.70576 6.80866 7.35298 7.45186 8.85588 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.050049 B = 0.003136 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.322757 B = 8927.007898 C = 9077.427885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.060 3.940 5 O -0.359 6.359 6 C 0.465 3.535 7 O -0.524 6.524 8 C 0.056 3.944 9 N -0.530 5.530 10 C 0.064 3.936 11 C -0.136 4.136 12 C 0.232 3.768 13 O -0.590 6.590 14 C -0.556 4.556 15 H 0.062 0.938 16 C 0.027 3.973 17 N -0.913 5.913 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.069 3.931 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.371 0.629 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.214 -6.903 2.033 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.014 4.014 5 O -0.276 6.276 6 C 0.308 3.692 7 O -0.411 6.411 8 C -0.073 4.073 9 N -0.255 5.255 10 C -0.063 4.063 11 C -0.176 4.176 12 C 0.192 3.808 13 O -0.397 6.397 14 C -0.594 4.594 15 H 0.080 0.920 16 C -0.173 4.173 17 N -0.553 5.553 18 Si 0.788 3.212 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.206 1.206 22 C -0.057 4.057 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.223 -7.646 2.799 20.876 hybrid contribution 1.046 1.017 -1.484 2.080 sum -18.177 -6.629 1.316 19.393 Atomic orbital electron populations 1.21743 0.94246 1.02395 1.02348 1.21450 0.97099 0.94681 1.02728 1.21603 0.90256 0.98838 1.04180 1.23297 0.96428 0.79333 1.02300 1.86465 1.23645 1.33449 1.84056 1.23903 0.80559 0.92887 0.71819 1.90661 1.61088 1.43891 1.45501 1.21921 0.88831 0.90110 1.06428 1.63224 1.04291 1.25570 1.32436 1.22622 0.97214 0.97935 0.88570 1.23114 0.98064 0.96867 0.99510 1.19837 0.84507 0.89345 0.87131 1.86146 1.26708 1.80346 1.46504 1.21829 1.15910 0.92908 1.28778 0.91988 1.25742 0.95796 1.01077 0.94717 1.69853 1.21089 1.31728 1.32583 0.85446 0.77978 0.80031 0.77757 1.19101 1.20827 1.20555 1.22921 0.94488 0.87885 1.00425 0.91831 0.92243 0.92323 0.91566 0.91455 0.90236 0.90403 0.91787 0.91619 0.84326 0.88719 0.92936 0.93161 0.92624 0.92877 0.78027 0.92312 0.91117 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.47 5.93 30.60 0.18 -1.29 16 3 C -0.11 -1.65 5.59 30.59 0.17 -1.47 16 4 C 0.06 1.27 5.47 71.98 0.39 1.67 16 5 O -0.36 -9.21 10.22 -51.41 -0.53 -9.74 16 6 C 0.47 14.45 7.60 71.24 0.54 14.99 16 7 O -0.52 -20.07 15.29 21.96 0.34 -19.73 16 8 C 0.06 1.64 5.14 85.56 0.44 2.08 16 9 N -0.53 -20.71 4.85 -890.07 -4.32 -25.03 16 10 C 0.06 2.67 5.65 86.64 0.49 3.16 16 11 C -0.14 -6.41 5.37 31.77 0.17 -6.24 16 12 C 0.23 11.55 0.87 -10.15 -0.01 11.54 16 13 O -0.59 -31.94 13.16 -148.98 -1.96 -33.90 16 14 C -0.56 -29.28 8.27 25.60 0.21 -29.07 16 15 H 0.06 3.19 7.79 -2.91 -0.02 3.16 16 16 C 0.03 1.43 5.29 84.66 0.45 1.87 16 17 N -0.91 -49.15 10.75 21.45 0.23 -48.91 16 18 Si 0.96 41.64 29.54 68.60 2.03 43.67 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.07 2.89 5.86 86.77 0.51 3.40 16 23 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.41 8.13 -2.38 -0.02 1.39 16 31 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.14 3.29 8.07 -2.38 -0.02 3.27 16 33 H 0.10 2.44 7.96 -2.39 -0.02 2.42 16 34 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.05 1.87 7.31 -2.39 -0.02 1.85 16 36 H 0.05 2.84 7.54 -2.39 -0.02 2.82 16 37 H 0.05 2.48 8.03 -2.38 -0.02 2.46 16 38 H 0.37 20.46 7.56 -74.06 -0.56 19.90 16 39 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 41 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -62.43 335.90 0.49 -61.94 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.44 Total: 31.84 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 4.26 Total: -0.13 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -4.09 Total: -73.94 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -2.15 Total: -63.37 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -62.43 0.49 -61.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.152 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds