Wall clock time and date at job start Mon Mar 30 2020 01:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47223 * 120.00663 * 2 1 3 5 5 O 1.45205 * 109.47201 * 175.00019 * 4 2 1 6 6 C 1.34220 * 116.99977 * 179.97438 * 5 4 2 7 7 O 1.20830 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99929 * 179.97438 * 6 5 4 9 9 N 1.46904 * 109.47311 * 180.02562 * 8 6 5 10 10 C 1.47843 * 110.99640 * 69.15748 * 9 8 6 11 11 C 1.54916 * 104.79337 * 146.36598 * 10 9 8 12 12 C 1.55398 * 101.74107 * 323.02060 * 11 10 9 13 13 O 1.42902 * 110.67651 * 277.17865 * 12 11 10 14 14 C 1.50693 * 110.84773 * 153.86113 * 12 11 10 15 15 H 1.08003 * 120.00166 * 246.46481 * 14 12 11 16 16 C 1.37883 * 119.99850 * 66.46355 * 14 12 11 17 17 N 1.31508 * 119.99898 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99869 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47362 * 90.00177 * 18 16 14 20 20 H 1.48504 * 109.46872 * 209.99961 * 18 16 14 21 21 H 1.48499 * 109.47348 * 329.99947 * 18 16 14 22 22 C 1.47439 * 111.00045 * 190.00457 * 9 8 6 23 23 H 1.09002 * 109.46797 * 299.99367 * 1 2 3 24 24 H 1.09001 * 109.47349 * 59.99688 * 1 2 3 25 25 H 1.09005 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46797 * 240.00633 * 2 1 3 27 27 H 1.09007 * 109.46749 * 60.00070 * 3 2 1 28 28 H 1.08991 * 109.47298 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47672 * 300.00506 * 3 2 1 30 30 H 1.09003 * 109.47291 * 54.99741 * 4 2 1 31 31 H 1.08997 * 109.46717 * 294.99744 * 4 2 1 32 32 H 1.09006 * 109.46901 * 60.00423 * 8 6 5 33 33 H 1.08995 * 109.47570 * 300.00148 * 8 6 5 34 34 H 1.08996 * 110.37823 * 265.19398 * 10 9 8 35 35 H 1.09002 * 110.37399 * 27.53914 * 10 9 8 36 36 H 1.08995 * 110.98807 * 81.01940 * 11 10 9 37 37 H 1.08997 * 110.99076 * 204.80412 * 11 10 9 38 38 H 0.96704 * 113.99505 * 293.43296 * 13 12 11 39 39 H 0.97004 * 120.00131 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88998 * 356.14887 * 22 9 8 41 41 H 1.09003 * 109.88733 * 117.17548 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4872 -0.8256 1.1910 6 6 4.0959 -1.4366 2.2194 7 8 3.4413 -1.8704 3.1376 8 6 5.5958 -1.5825 2.2283 9 7 6.0127 -2.2810 3.4515 10 6 5.5874 -3.6967 3.4242 11 6 6.7067 -4.4605 4.1750 12 6 7.9766 -3.6903 3.7178 13 8 8.4230 -4.1634 2.4454 14 6 9.0728 -3.8058 4.7454 15 1 9.3993 -2.9305 5.2874 16 6 9.6589 -5.0289 4.9937 17 7 9.2616 -6.0945 4.3334 18 14 11.0172 -5.1722 6.2680 19 1 10.4213 -5.4673 7.5958 20 1 11.9412 -6.2699 5.8852 21 1 11.7690 -3.8934 6.3361 22 6 7.4774 -2.2338 3.6139 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9562 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6054 -1.7200 1.2950 31 1 1.7517 -0.1585 2.1369 32 1 6.0571 -0.5953 2.1981 33 1 5.9102 -2.1572 1.3571 34 1 4.6346 -3.8167 3.9396 35 1 5.5107 -4.0501 2.3959 36 1 6.5744 -4.3853 5.2542 37 1 6.7466 -5.5033 3.8602 38 1 8.7471 -5.0744 2.4562 39 1 9.6737 -6.9551 4.5083 40 1 7.9307 -1.7471 2.7503 41 1 7.7323 -1.6887 4.5228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:17 Heat of formation + Delta-G solvation = -161.454253 kcal Electronic energy + Delta-G solvation = -21413.982777 eV Core-core repulsion = 18099.821864 eV Total energy + Delta-G solvation = -3314.160913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61539 -40.01671 -38.05349 -36.41789 -35.97150 -34.11476 -32.24954 -29.96085 -28.85770 -28.03601 -27.20764 -25.84504 -22.60529 -21.68237 -21.33409 -21.19272 -19.18845 -18.64218 -17.82612 -17.52693 -16.91221 -16.65649 -16.15711 -15.77621 -15.61649 -15.03917 -14.85994 -14.52201 -14.10507 -13.80742 -13.68637 -13.55078 -13.29363 -13.18762 -12.97751 -12.95720 -12.69463 -12.42849 -12.33461 -12.18405 -12.14622 -12.06897 -11.89725 -11.70004 -11.47570 -11.39499 -11.15177 -10.63225 -10.09453 -9.36002 -8.21939 -6.36180 1.19315 1.42253 1.44301 1.52848 1.54549 2.39805 3.02480 3.07198 3.62690 3.81011 3.83747 3.87130 4.08645 4.15368 4.27495 4.31225 4.39926 4.42732 4.44965 4.51861 4.63674 4.64004 4.80390 4.80601 4.98404 5.00305 5.10255 5.18493 5.22039 5.29702 5.40991 5.46254 5.47760 5.51804 5.79416 5.85612 6.00475 6.14647 6.68372 6.80306 7.34269 7.43235 8.83905 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.054947 B = 0.003376 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.457716 B = 8292.309599 C = 8374.638651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.147 4.147 4 C 0.065 3.935 5 O -0.357 6.357 6 C 0.468 3.532 7 O -0.522 6.522 8 C 0.057 3.943 9 N -0.523 5.523 10 C 0.057 3.943 11 C -0.125 4.125 12 C 0.222 3.778 13 O -0.596 6.596 14 C -0.555 4.555 15 H 0.060 0.940 16 C 0.027 3.973 17 N -0.916 5.916 18 Si 0.962 3.038 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.270 1.270 22 C 0.067 3.933 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.378 0.622 39 H 0.269 0.731 40 H 0.063 0.937 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 10.991 -8.825 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.009 4.009 5 O -0.273 6.273 6 C 0.311 3.689 7 O -0.410 6.410 8 C -0.072 4.072 9 N -0.248 5.248 10 C -0.070 4.070 11 C -0.164 4.164 12 C 0.182 3.818 13 O -0.406 6.406 14 C -0.594 4.594 15 H 0.079 0.921 16 C -0.173 4.173 17 N -0.556 5.556 18 Si 0.788 3.212 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.060 4.060 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.229 0.771 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.668 11.564 -8.363 19.761 hybrid contribution 1.132 -1.567 0.443 1.984 sum -12.536 9.997 -7.920 17.884 Atomic orbital electron populations 1.21781 0.92278 1.02679 1.03315 1.21194 0.96960 0.96938 0.95940 1.21832 1.01301 0.94717 1.02571 1.23387 0.75675 1.01300 1.00536 1.86466 1.24741 1.71224 1.44897 1.23782 0.91915 0.73912 0.79283 1.90636 1.67358 1.46090 1.36911 1.21917 0.87858 1.03496 0.93901 1.63397 1.12997 1.14074 1.34311 1.22946 0.98488 0.87082 0.98512 1.23057 0.95816 0.98899 0.98666 1.19967 0.90624 0.89641 0.81599 1.86043 1.85305 1.35557 1.33679 1.21872 1.20422 0.95000 1.22067 0.92141 1.25722 0.98689 0.95222 0.97679 1.69671 1.43235 0.99982 1.42731 0.85493 0.78895 0.77830 0.78991 1.20324 1.20696 1.19427 1.22748 0.84787 0.96868 1.01556 0.92085 0.90185 0.92192 0.89881 0.92596 0.92894 0.90874 0.91776 0.91515 0.84451 0.89792 0.91075 0.94588 0.93170 0.92644 0.77070 0.92117 0.91882 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.09 -1.42 3.16 -10.79 -0.03 -1.45 16 3 C -0.15 -2.12 9.09 71.98 0.65 -1.46 16 4 C 0.06 1.40 4.84 71.98 0.35 1.75 16 5 O -0.36 -9.36 9.76 -51.32 -0.50 -9.86 16 6 C 0.47 14.73 7.75 71.24 0.55 15.28 16 7 O -0.52 -19.62 14.79 21.95 0.32 -19.30 16 8 C 0.06 1.77 5.17 85.56 0.44 2.22 16 9 N -0.52 -20.34 4.86 -890.07 -4.33 -24.67 16 10 C 0.06 2.39 5.74 86.78 0.50 2.89 16 11 C -0.13 -6.02 5.68 32.07 0.18 -5.84 16 12 C 0.22 10.97 0.86 -10.27 -0.01 10.96 16 13 O -0.60 -30.65 13.09 -148.98 -1.95 -32.60 16 14 C -0.56 -29.62 8.22 25.60 0.21 -29.41 16 15 H 0.06 3.18 7.53 -2.91 -0.02 3.16 16 16 C 0.03 1.41 5.29 84.66 0.45 1.86 16 17 N -0.92 -49.07 10.72 21.45 0.23 -48.84 16 18 Si 0.96 42.12 29.54 68.60 2.03 44.15 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 C 0.07 2.83 6.21 86.65 0.54 3.36 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.05 0.89 7.82 -2.39 -0.02 0.87 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 31 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.14 3.49 8.03 -2.38 -0.02 3.47 16 33 H 0.08 2.55 7.85 -2.39 -0.02 2.53 16 34 H 0.07 2.99 7.38 -2.39 -0.02 2.97 16 35 H 0.04 1.47 7.62 -2.39 -0.02 1.45 16 36 H 0.05 2.50 8.04 -2.39 -0.02 2.49 16 37 H 0.05 2.81 7.78 -2.39 -0.02 2.79 16 38 H 0.38 20.22 6.99 -74.05 -0.52 19.70 16 39 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 40 H 0.06 2.46 7.48 -2.39 -0.02 2.45 16 41 H 0.08 3.55 7.63 -2.39 -0.02 3.53 16 Total: -1.00 -60.17 332.87 0.78 -59.38 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.49 Total: 32.56 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.49 Total: -0.84 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -4.10 Total: -73.51 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -2.13 Total: -61.75 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -60.17 0.78 -59.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.071 kcal (2) G-P(sol) polarization free energy of solvation -60.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds