Wall clock time and date at job start Mon Mar 30 2020 00:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47047 * 299.99890 * 3 2 1 6 6 H 1.48497 * 109.46862 * 59.99632 * 3 2 1 7 7 C 1.37880 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47317 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47326 * 183.87167 * 11 10 9 13 13 C 1.46900 * 110.99668 * 287.61865 * 12 11 10 14 14 C 1.50702 * 109.46589 * 152.29314 * 13 12 11 15 15 O 1.20821 * 120.00237 * 352.88921 * 14 13 12 16 16 O 1.34228 * 119.99767 * 172.89068 * 14 13 12 17 17 C 1.46899 * 110.99679 * 163.66191 * 12 11 10 18 18 C 1.53173 * 109.54454 * 66.20560 * 17 12 11 19 19 C 1.53087 * 109.16493 * 176.84201 * 18 17 12 20 20 O 1.42905 * 109.41824 * 302.39440 * 19 18 17 21 21 C 1.42900 * 114.09577 * 61.15481 * 20 19 18 22 22 C 1.53098 * 109.41694 * 298.84082 * 21 20 19 23 23 H 0.96999 * 119.99610 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47189 * 60.00002 * 9 7 2 25 25 H 1.09000 * 109.47296 * 300.00133 * 9 7 2 26 26 H 1.08999 * 109.47057 * 59.99937 * 10 9 7 27 27 H 1.09000 * 109.47139 * 300.00244 * 10 9 7 28 28 H 1.09004 * 109.46905 * 63.87113 * 11 10 9 29 29 H 1.09003 * 109.46987 * 303.87618 * 11 10 9 30 30 H 1.09000 * 109.46853 * 272.28719 * 13 12 11 31 31 H 1.08992 * 109.47688 * 32.29281 * 13 12 11 32 32 H 0.96701 * 117.00271 * 179.97438 * 16 14 13 33 33 H 1.08996 * 109.61703 * 305.98281 * 17 12 11 34 34 H 1.08995 * 109.52201 * 296.75557 * 18 17 12 35 35 H 1.09005 * 109.51939 * 56.93885 * 18 17 12 36 36 H 1.09000 * 109.48581 * 182.41168 * 19 18 17 37 37 H 1.08996 * 109.47945 * 62.37662 * 19 18 17 38 38 H 1.09007 * 109.48308 * 178.86472 * 21 20 19 39 39 H 1.08996 * 109.49523 * 58.83288 * 21 20 19 40 40 H 1.08997 * 109.52509 * 297.70950 * 22 21 20 41 41 H 1.09000 * 109.52476 * 177.51138 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4320 -6.1022 0.0947 13 6 3.1643 -6.2763 -1.1668 14 6 4.5137 -6.8851 -0.8843 15 8 4.8849 -7.0284 0.2565 16 8 5.3031 -7.2681 -1.9001 17 6 1.7512 -7.3443 0.4841 18 6 0.7974 -7.7778 -0.6333 19 6 0.1520 -9.1129 -0.2533 20 8 1.1730 -10.0865 -0.0260 21 6 2.0665 -9.7571 1.0395 22 6 2.7890 -8.4478 0.7113 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.9062 -5.0758 -0.9213 29 1 0.8027 -5.0152 0.8547 30 1 2.5996 -6.9348 -1.8268 31 1 3.2965 -5.3069 -1.6471 32 1 6.1597 -7.6530 -1.6695 33 1 1.1867 -7.1799 1.4019 34 1 0.0224 -7.0226 -0.7641 35 1 1.3545 -7.8940 -1.5630 36 1 -0.4953 -9.4476 -1.0639 37 1 -0.4379 -8.9862 0.6544 38 1 2.7986 -10.5557 1.1602 39 1 1.5019 -9.6388 1.9642 40 1 3.3862 -8.5775 -0.1912 41 1 3.4381 -8.1717 1.5423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833061924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:47 Heat of formation + Delta-G solvation = -137.597239 kcal Electronic energy + Delta-G solvation = -21804.509103 eV Core-core repulsion = 18491.382708 eV Total energy + Delta-G solvation = -3313.126395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75680 -39.35448 -37.34506 -35.91302 -34.01145 -32.35766 -31.23430 -30.86435 -28.41292 -26.25432 -24.05204 -23.67766 -22.42308 -21.53115 -20.07303 -19.45419 -18.03927 -16.98875 -16.50325 -16.34552 -16.13883 -15.86783 -15.06485 -14.97618 -14.49635 -14.43007 -14.11173 -13.65830 -13.39056 -13.04081 -12.48342 -12.31509 -12.17349 -11.83824 -11.65884 -11.52238 -11.38190 -11.05988 -10.97635 -10.83150 -10.61738 -10.53228 -10.39138 -10.31023 -9.77238 -9.64864 -9.34655 -9.07440 -8.35596 -8.20213 -6.00891 -4.02706 2.32458 2.92103 3.31016 3.38642 3.43328 3.71018 3.99868 4.46386 4.56539 4.64901 4.82722 4.91730 5.02071 5.13495 5.19709 5.32137 5.35309 5.37798 5.41484 5.51727 5.53126 5.66401 5.71209 5.80422 5.87573 6.12425 6.14126 6.20551 6.55217 6.59023 6.68624 6.99404 7.03171 7.15435 7.23097 7.66709 7.80223 7.99249 8.01751 8.42645 9.04551 9.61606 11.10566 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.004156 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.132516 B = 6735.464394 C = 7542.480179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.058 3.942 12 N -0.516 5.516 13 C 0.050 3.950 14 C 0.476 3.524 15 O -0.492 6.492 16 O -0.525 6.525 17 C 0.083 3.917 18 C -0.197 4.197 19 C 0.067 3.933 20 O -0.387 6.387 21 C 0.059 3.941 22 C -0.144 4.144 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.017 0.983 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.406 0.594 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -19.446 -2.074 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.239 5.239 13 C -0.079 4.079 14 C 0.317 3.683 15 O -0.378 6.378 16 O -0.337 6.337 17 C -0.025 4.025 18 C -0.236 4.236 19 C -0.010 4.010 20 O -0.306 6.306 21 C -0.018 4.018 22 C -0.182 4.182 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.264 0.736 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.621 -19.227 -1.579 19.628 hybrid contribution 0.409 0.883 -0.345 1.033 sum 4.030 -18.343 -1.924 18.879 Atomic orbital electron populations 1.69974 1.06048 1.26461 1.51120 1.25019 0.94838 0.99255 0.95350 0.86549 0.80177 0.83814 0.77559 1.19725 1.21046 1.21012 1.21279 0.93099 0.91000 1.50239 0.92635 1.19073 0.93974 0.91343 0.97153 1.21697 0.99210 0.92591 1.00927 1.22372 0.93523 0.90200 1.00694 1.61805 1.28267 1.04723 1.29125 1.21709 0.89584 1.03027 0.93564 1.23445 0.87124 0.74960 0.82772 1.90701 1.73658 1.50541 1.22903 1.84537 1.32983 1.74963 1.41225 1.21868 0.93582 0.89290 0.97802 1.22982 1.00879 0.98864 1.00888 1.22485 0.89703 0.88004 1.00845 1.87910 1.42988 1.45430 1.54233 1.22664 0.92393 0.97163 0.89564 1.22480 0.98280 0.93874 1.03517 0.93094 0.96753 0.96513 0.92253 0.93682 0.94539 0.90467 0.89869 0.86160 0.73553 0.89254 0.90068 0.90681 0.88951 0.93002 0.88959 0.93058 0.92086 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.14 5.17 -26.73 -0.14 -2.28 16 11 C 0.06 0.94 4.23 -3.82 -0.02 0.92 16 12 N -0.52 -7.45 4.01 -227.86 -0.91 -8.36 16 13 C 0.05 0.65 5.05 -4.97 -0.03 0.63 16 14 C 0.48 6.28 6.26 36.01 0.23 6.51 16 15 O -0.49 -7.73 14.38 -18.75 -0.27 -8.00 16 16 O -0.53 -5.45 13.42 -39.25 -0.53 -5.98 16 17 C 0.08 1.02 2.29 -67.53 -0.15 0.87 16 18 C -0.20 -2.11 4.85 -26.60 -0.13 -2.24 16 19 C 0.07 0.66 6.84 37.20 0.25 0.92 16 20 O -0.39 -4.50 10.77 -35.23 -0.38 -4.88 16 21 C 0.06 0.61 6.84 37.21 0.25 0.87 16 22 C -0.14 -1.72 3.92 -26.59 -0.10 -1.82 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.04 0.88 6.70 -51.93 -0.35 0.54 16 28 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 29 H 0.08 1.25 7.87 -51.93 -0.41 0.84 16 30 H 0.08 0.95 5.31 -51.93 -0.28 0.67 16 31 H 0.12 1.61 6.27 -51.93 -0.33 1.28 16 32 H 0.41 2.50 9.10 45.56 0.41 2.91 16 33 H 0.09 1.11 7.96 -51.93 -0.41 0.69 16 34 H 0.08 0.86 7.12 -51.93 -0.37 0.49 16 35 H 0.07 0.82 5.81 -51.93 -0.30 0.51 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.77 5.32 -51.93 -0.28 0.50 16 41 H 0.09 1.26 7.18 -51.93 -0.37 0.89 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -32.59 320.70 -7.48 -40.07 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.56 Total: 0.31 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.38 Total: -8.63 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.18 Total: -34.41 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.18 Total: -18.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.59 -7.48 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833061924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.522 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds