Wall clock time and date at job start Mon Mar 30 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46994 * 2 1 4 4 C 1.53002 * 109.47373 * 119.99822 * 2 1 3 5 5 C 1.50697 * 109.47170 * 300.00414 * 4 2 1 6 6 H 1.08010 * 119.99971 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00034 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99981 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 119.99817 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46995 * 269.99740 * 9 7 5 11 11 H 1.48499 * 109.47548 * 30.00059 * 9 7 5 12 12 H 1.48506 * 109.47081 * 150.00151 * 9 7 5 13 13 C 1.52994 * 109.47170 * 240.00179 * 2 1 3 14 14 N 1.46906 * 109.47345 * 44.15362 * 13 2 1 15 15 C 1.47014 * 110.99808 * 45.30796 * 14 13 2 16 16 C 1.53095 * 109.25940 * 177.61077 * 15 14 13 17 17 O 1.43020 * 109.25780 * 56.84263 * 16 15 14 18 18 C 1.43013 * 113.73923 * 301.33416 * 17 16 15 19 19 C 1.47016 * 111.00062 * 281.67363 * 14 13 2 20 20 H 1.09000 * 109.50420 * 62.44781 * 19 14 13 21 21 C 1.50700 * 109.50426 * 302.32541 * 19 14 13 22 22 O 1.20832 * 120.00332 * 332.21442 * 21 19 14 23 23 O 1.34227 * 120.00327 * 152.21168 * 21 19 14 24 24 H 1.08998 * 109.47028 * 292.73095 * 1 2 3 25 25 H 1.08996 * 109.47135 * 52.72842 * 1 2 3 26 26 H 1.09000 * 109.46903 * 172.73063 * 1 2 3 27 27 H 1.08999 * 109.47401 * 240.40339 * 3 2 1 28 28 H 1.09002 * 109.47134 * 0.40049 * 3 2 1 29 29 H 1.09000 * 109.47106 * 120.39715 * 3 2 1 30 30 H 1.08993 * 109.47215 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46570 * 59.99709 * 4 2 1 32 32 H 0.96998 * 120.00129 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47184 * 164.15063 * 13 2 1 34 34 H 1.09001 * 109.47114 * 284.15442 * 13 2 1 35 35 H 1.09000 * 109.50539 * 297.54153 * 15 14 13 36 36 H 1.08997 * 109.50990 * 57.63132 * 15 14 13 37 37 H 1.08993 * 109.50946 * 176.78105 * 16 15 14 38 38 H 1.09001 * 109.50303 * 296.86807 * 16 15 14 39 39 H 1.09002 * 109.50589 * 178.60753 * 18 17 16 40 40 H 1.09003 * 109.50701 * 298.73024 * 18 17 16 41 41 H 0.96697 * 117.00828 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8704 -0.4822 3.7320 8 7 1.4324 0.1380 4.8058 9 14 2.9433 -2.0017 3.9033 10 1 2.0838 -3.2118 3.9487 11 1 3.8637 -2.0914 2.7414 12 1 3.7352 -1.9098 5.1562 13 6 2.0400 -0.7212 -1.2492 14 7 1.2664 -0.2821 -2.4183 15 6 1.1087 1.1795 -2.4270 16 6 0.3504 1.5981 -3.6894 17 8 -0.9068 0.9176 -3.7319 18 6 -0.7903 -0.5078 -3.7254 19 6 -0.0437 -0.9477 -2.4634 20 1 -0.6230 -0.6709 -1.5825 21 6 0.1516 -2.4417 -2.4892 22 8 1.1593 -2.9113 -2.9627 23 8 -0.7938 -3.2510 -1.9863 24 1 -0.3633 0.3971 0.9478 25 1 -0.3633 0.6223 -0.8178 26 1 -0.3633 -1.0194 -0.1300 27 1 2.6396 1.6160 -0.8936 28 1 1.1922 2.1276 0.0072 29 1 2.6514 1.6118 0.8864 30 1 3.1300 -0.7216 1.2490 31 1 1.6767 -1.7489 1.2492 32 1 1.6662 -0.1937 5.6868 33 1 3.0932 -0.4846 -1.4008 34 1 1.9242 -1.7973 -1.1202 35 1 0.5478 1.4903 -1.5456 36 1 2.0911 1.6517 -2.4184 37 1 0.1811 2.6747 -3.6721 38 1 0.9369 1.3360 -4.5699 39 1 -1.7847 -0.9542 -3.7342 40 1 -0.2374 -0.8319 -4.6071 41 1 -0.6237 -4.2021 -2.0249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833456962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:12 Heat of formation + Delta-G solvation = -90.662928 kcal Electronic energy + Delta-G solvation = -23115.045131 eV Core-core repulsion = 19803.953960 eV Total energy + Delta-G solvation = -3311.091171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27206 -39.40687 -37.58044 -36.08203 -34.12536 -32.22113 -31.68185 -28.77524 -27.89864 -27.11679 -25.26723 -24.43195 -22.33500 -21.93962 -19.93566 -18.34418 -18.15502 -17.03855 -16.66978 -16.56346 -15.98747 -15.55974 -15.23552 -14.84354 -14.38947 -14.03525 -13.69295 -13.55399 -13.24923 -12.98876 -12.73732 -12.30395 -11.98907 -11.74807 -11.57159 -11.49148 -11.12766 -10.98269 -10.82176 -10.66763 -10.55859 -10.36071 -10.26108 -10.02957 -9.85456 -9.67619 -9.61469 -9.10327 -8.56325 -7.88092 -6.06743 -4.03741 2.18129 2.86485 3.27749 3.36028 3.39708 3.66353 4.01890 4.42687 4.68073 4.92124 5.02793 5.06403 5.24458 5.26365 5.32631 5.38718 5.42072 5.52537 5.55320 5.66462 5.76420 5.92093 5.95164 6.11140 6.17872 6.28148 6.39543 6.46870 6.54304 6.74787 6.88521 6.96371 7.02098 7.06034 7.09737 7.22348 7.35872 7.75900 7.93401 8.51181 8.98093 9.56215 11.06186 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.006385 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.096583 B = 4384.111341 C = 5017.965169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.084 4.084 3 C -0.139 4.139 4 C 0.000 4.000 5 C -0.511 4.511 6 H 0.077 0.923 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.288 1.288 13 C 0.056 3.944 14 N -0.512 5.512 15 C -0.005 4.005 16 C 0.056 3.944 17 O -0.376 6.376 18 C 0.080 3.920 19 C 0.011 3.989 20 H 0.131 0.869 21 C 0.487 3.513 22 O -0.496 6.496 23 O -0.516 6.516 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.017 0.983 31 H 0.007 0.993 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -0.901 -16.580 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.037 4.037 5 C -0.549 4.549 6 H 0.095 0.905 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.214 1.214 13 C -0.072 4.072 14 N -0.237 5.237 15 C -0.132 4.132 16 C -0.020 4.020 17 O -0.294 6.294 18 C 0.002 3.998 19 C -0.098 4.098 20 H 0.148 0.852 21 C 0.328 3.672 22 O -0.382 6.382 23 O -0.327 6.327 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.279 -0.656 -16.953 17.280 hybrid contribution 0.656 -1.566 1.085 2.015 sum -2.623 -2.223 -15.869 16.237 Atomic orbital electron populations 1.22618 0.95914 1.00241 1.02608 1.21076 0.95075 0.96456 0.95924 1.22286 1.00620 0.95077 1.01638 1.19644 0.96103 0.95098 0.92904 1.21092 1.31772 1.13337 0.88675 0.90512 1.25008 0.95712 0.96709 0.96013 1.69903 1.45934 1.40508 0.97873 0.86863 0.81328 0.83963 0.77629 1.20470 1.19089 1.21435 1.22601 0.97810 0.99655 0.87093 1.62371 1.13187 1.05749 1.42403 1.23642 1.02333 0.88003 0.99201 1.22857 0.84689 0.97089 0.97413 1.88012 1.29479 1.17222 1.94687 1.22484 1.00383 0.82204 0.94718 1.22930 0.95209 0.87301 1.04326 0.85186 1.23083 0.80326 0.90085 0.73747 1.90712 1.28598 1.77144 1.41769 1.84544 1.48604 1.23493 1.76095 0.90229 0.92649 0.93210 0.93614 0.93351 0.91126 0.96464 0.97507 0.92800 0.90174 0.91334 0.89881 0.88445 0.88187 0.92439 0.87819 0.92049 0.73179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 6.03 37.16 0.22 -2.56 16 2 C -0.08 -1.54 0.53 -154.51 -0.08 -1.63 16 3 C -0.14 -2.40 7.20 37.16 0.27 -2.13 16 4 C 0.00 0.01 2.88 -27.88 -0.08 -0.07 16 5 C -0.51 -13.76 7.80 -34.44 -0.27 -14.03 16 6 H 0.08 2.20 6.68 -52.48 -0.35 1.85 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.06 0.94 4.60 -3.82 -0.02 0.92 16 14 N -0.51 -7.49 4.48 -227.73 -1.02 -8.51 16 15 C -0.01 -0.06 3.87 -3.71 -0.01 -0.08 16 16 C 0.06 0.62 7.01 37.21 0.26 0.88 16 17 O -0.38 -4.71 10.83 -35.23 -0.38 -5.10 16 18 C 0.08 0.94 6.27 37.20 0.23 1.18 16 19 C 0.01 0.16 1.76 -68.76 -0.12 0.04 16 20 H 0.13 1.89 3.19 -51.93 -0.17 1.73 16 21 C 0.49 6.99 6.12 36.01 0.22 7.21 16 22 O -0.50 -8.42 16.37 -18.76 -0.31 -8.73 16 23 O -0.52 -6.03 13.42 -39.25 -0.53 -6.56 16 24 H 0.08 1.62 6.41 -51.93 -0.33 1.28 16 25 H 0.06 0.86 3.82 -51.93 -0.20 0.66 16 26 H 0.05 0.87 6.53 -51.93 -0.34 0.53 16 27 H 0.05 0.67 5.02 -51.93 -0.26 0.40 16 28 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 29 H 0.07 1.40 6.99 -51.93 -0.36 1.04 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 31 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 34 H 0.07 1.25 5.86 -51.93 -0.30 0.95 16 35 H 0.08 1.15 2.94 -51.93 -0.15 0.99 16 36 H 0.10 1.16 6.26 -51.93 -0.33 0.83 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.41 3.02 9.10 45.56 0.41 3.44 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -32.13 299.80 -5.84 -37.98 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.76 Total: 4.44 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.53 Total: -8.47 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.25 Total: -35.02 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.22 Total: -20.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.13 -5.84 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.686 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds