Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 O 1.42902 * 109.47106 * 120.00116 * 2 1 3 5 5 C 1.42901 * 114.00109 * 90.00317 * 4 2 1 6 6 C 1.53004 * 109.46898 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46723 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00254 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99819 * 179.97438 * 7 6 5 10 10 C 1.47021 * 125.64744 * 359.96801 * 9 7 6 11 11 C 1.54326 * 107.27002 * 181.08547 * 10 9 7 12 12 C 1.55151 * 102.94313 * 22.19392 * 11 10 9 13 13 O 1.42901 * 111.00842 * 82.56580 * 12 11 10 14 14 C 1.50698 * 111.00641 * 206.42337 * 12 11 10 15 15 H 1.07993 * 120.00138 * 112.19363 * 14 12 11 16 16 C 1.37875 * 119.99529 * 292.19405 * 14 12 11 17 17 N 1.31514 * 120.00358 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99716 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47193 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47196 * 119.99989 * 18 16 14 21 21 H 1.48495 * 109.46989 * 240.00003 * 18 16 14 22 22 C 1.47421 * 125.64805 * 179.97438 * 9 7 6 23 23 H 1.09001 * 109.47337 * 299.99475 * 1 2 3 24 24 H 1.08999 * 109.47601 * 60.00327 * 1 2 3 25 25 H 1.09008 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47036 * 240.00081 * 2 1 3 27 27 H 1.08999 * 109.47493 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46946 * 300.00044 * 3 2 1 29 29 H 1.08996 * 109.47054 * 59.99548 * 3 2 1 30 30 H 1.08995 * 109.47354 * 59.99912 * 5 4 2 31 31 H 1.09003 * 109.46695 * 299.99832 * 5 4 2 32 32 H 1.08995 * 109.47243 * 59.99779 * 6 5 4 33 33 H 1.08996 * 109.46877 * 299.99456 * 6 5 4 34 34 H 1.08996 * 109.88310 * 300.50411 * 10 9 7 35 35 H 1.09002 * 109.88672 * 61.51452 * 10 9 7 36 36 H 1.09000 * 110.72348 * 263.82382 * 11 10 9 37 37 H 1.09003 * 110.71705 * 140.55404 * 11 10 9 38 38 H 0.96708 * 113.99322 * 67.80350 * 13 12 11 39 39 H 0.96999 * 120.00046 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.36865 * 37.00989 * 22 9 7 41 41 H 1.09001 * 110.37117 * 274.68307 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7079 -2.6927 2.2946 7 6 2.9117 -4.1740 2.1068 8 8 2.6746 -4.6876 1.0340 9 7 3.3584 -4.9279 3.1308 10 6 3.6851 -4.4368 4.4776 11 6 4.1793 -5.6463 5.2988 12 6 4.6400 -6.6447 4.2042 13 8 5.9625 -6.3400 3.7567 14 6 4.5533 -8.0658 4.6982 15 1 3.8296 -8.7432 4.2697 16 6 5.3980 -8.5010 5.6973 17 7 6.2796 -7.6762 6.2187 18 14 5.2901 -10.2624 6.3102 19 1 4.2248 -10.9811 5.5659 20 1 6.5916 -10.9432 6.0914 21 1 4.9685 -10.2632 7.7599 22 6 3.6005 -6.3814 3.0860 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 2.9320 -2.2467 0.1987 31 1 1.2538 -2.5434 0.7124 32 1 1.9757 -2.5242 3.0842 33 1 3.6541 -2.2276 2.5711 34 1 4.4707 -3.6838 4.4171 35 1 2.7966 -4.0088 4.9418 36 1 3.3668 -6.0694 5.8895 37 1 5.0152 -5.3625 5.9383 38 1 6.6473 -6.4893 4.4229 39 1 6.8736 -7.9823 6.9219 40 1 4.0060 -6.6687 2.1158 41 1 2.6784 -6.9261 3.2890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -145.984296 kcal Electronic energy + Delta-G solvation = -21245.487779 eV Core-core repulsion = 17931.997694 eV Total energy + Delta-G solvation = -3313.490085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60548 -38.41266 -37.23114 -34.32628 -33.38540 -32.16603 -30.98738 -29.61209 -28.25991 -27.43583 -25.40678 -23.45979 -21.98428 -21.47066 -19.72958 -18.65269 -17.39993 -17.12822 -16.14313 -15.99238 -15.37437 -15.01190 -14.86882 -14.66830 -14.12437 -13.92386 -13.38233 -13.17844 -12.79423 -12.66632 -12.45338 -12.25464 -12.03901 -11.88659 -11.69512 -11.44005 -11.37282 -11.34900 -11.17112 -10.91741 -10.79203 -10.62326 -10.48445 -10.07165 -9.61651 -9.49534 -9.38617 -8.71294 -8.23834 -8.01484 -6.32865 -4.40515 3.03646 3.16718 3.20280 3.26234 3.30983 3.89816 4.24214 4.69405 4.83623 4.88777 4.96942 5.00371 5.10482 5.19670 5.36988 5.45290 5.52523 5.57897 5.61995 5.64686 5.72168 5.82886 5.87474 5.90626 5.97877 6.00956 6.03955 6.27104 6.41716 6.62983 6.85765 6.94005 7.17032 7.27419 7.29868 7.70867 7.95982 8.10589 8.57918 8.63136 9.28637 9.45160 10.74905 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.051890 B = 0.003304 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.471527 B = 8473.031495 C = 8640.910763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.387 6.387 5 C 0.080 3.920 6 C -0.134 4.134 7 C 0.527 3.473 8 O -0.559 6.559 9 N -0.605 5.605 10 C 0.099 3.901 11 C -0.140 4.140 12 C 0.248 3.752 13 O -0.584 6.584 14 C -0.534 4.534 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.119 3.881 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.386 0.614 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 13.528 -5.378 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.307 6.307 5 C 0.003 3.997 6 C -0.174 4.174 7 C 0.315 3.685 8 O -0.439 6.439 9 N -0.337 5.337 10 C -0.024 4.024 11 C -0.178 4.178 12 C 0.207 3.793 13 O -0.395 6.395 14 C -0.573 4.573 15 H 0.084 0.916 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.002 4.002 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.566 13.557 -6.233 16.730 hybrid contribution 0.241 -1.155 0.893 1.480 sum -7.325 12.402 -5.340 15.361 Atomic orbital electron populations 1.22305 0.96123 1.02496 1.02378 1.22051 0.93581 0.93674 0.88368 1.21860 1.01858 0.94572 1.02341 1.87849 1.86690 1.20404 1.35716 1.22161 1.00369 0.80454 0.96722 1.21423 1.04184 0.92502 0.99242 1.19906 0.77348 0.88104 0.83151 1.90663 1.52985 1.74628 1.25673 1.48588 1.63390 1.10157 1.11569 1.22187 0.98726 0.98866 0.82612 1.23208 1.01295 0.94386 0.98934 1.19597 0.80518 0.92166 0.86994 1.86101 1.17775 1.90189 1.45402 1.21518 1.19798 0.96224 1.19738 0.91571 1.25001 0.94505 0.98255 0.95317 1.69568 1.21333 1.35349 1.27504 0.86337 0.78216 0.83817 0.78459 1.19564 1.20745 1.20800 1.22403 0.98442 0.78313 1.01092 0.91819 0.91797 0.92346 0.92152 0.91965 0.91405 0.91830 0.92469 0.92590 0.88483 0.88318 0.92225 0.92704 0.91313 0.89817 0.76218 0.92102 0.91067 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.53 37.16 0.35 -1.21 16 2 C 0.08 0.82 3.34 -26.73 -0.09 0.73 16 3 C -0.15 -1.24 9.56 37.16 0.36 -0.88 16 4 O -0.39 -4.98 9.99 -35.23 -0.35 -5.33 16 5 C 0.08 1.10 5.04 37.16 0.19 1.28 16 6 C -0.13 -1.92 5.26 -27.88 -0.15 -2.07 16 7 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 8 O -0.56 -12.16 16.24 5.56 0.09 -12.07 16 9 N -0.60 -11.95 3.33 -170.51 -0.57 -12.52 16 10 C 0.10 1.76 6.49 -3.06 -0.02 1.74 16 11 C -0.14 -2.94 5.64 -24.90 -0.14 -3.08 16 12 C 0.25 5.94 0.89 -89.61 -0.08 5.86 16 13 O -0.58 -14.94 13.18 -35.23 -0.46 -15.41 16 14 C -0.53 -13.75 8.25 -34.44 -0.28 -14.03 16 15 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 17 N -0.90 -22.83 10.79 55.43 0.60 -22.24 16 18 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.12 2.66 6.08 -2.52 -0.02 2.64 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 7.87 -51.92 -0.41 0.15 16 26 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.81 8.04 -51.93 -0.42 0.40 16 31 H 0.06 0.78 7.83 -51.93 -0.41 0.37 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 38 H 0.39 9.93 6.93 45.56 0.32 10.25 16 39 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.07 1.70 8.04 -51.93 -0.42 1.28 16 41 H 0.07 1.53 8.01 -51.93 -0.42 1.12 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -28.40 337.34 -7.02 -35.42 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.33 Total: 9.61 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.06 Total: 2.52 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.03 Total: -34.75 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.73 Total: -32.81 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.40 -7.02 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.567 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds