Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 O 1.42902 * 109.47106 * 120.00116 * 2 1 3 5 5 C 1.42901 * 114.00109 * 90.00317 * 4 2 1 6 6 C 1.53004 * 109.46898 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.46723 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00254 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99819 * 179.97438 * 7 6 5 10 10 C 1.47021 * 125.64744 * 359.96801 * 9 7 6 11 11 C 1.54326 * 107.27002 * 181.08547 * 10 9 7 12 12 C 1.55151 * 102.94313 * 22.19392 * 11 10 9 13 13 O 1.42901 * 111.00842 * 82.56580 * 12 11 10 14 14 C 1.50698 * 111.00641 * 206.42337 * 12 11 10 15 15 H 1.07993 * 120.00138 * 112.19363 * 14 12 11 16 16 C 1.37875 * 119.99529 * 292.19405 * 14 12 11 17 17 N 1.31514 * 120.00358 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99716 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47193 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47196 * 119.99989 * 18 16 14 21 21 H 1.48495 * 109.46989 * 240.00003 * 18 16 14 22 22 C 1.47421 * 125.64805 * 179.97438 * 9 7 6 23 23 H 1.09001 * 109.47337 * 299.99475 * 1 2 3 24 24 H 1.08999 * 109.47601 * 60.00327 * 1 2 3 25 25 H 1.09008 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47036 * 240.00081 * 2 1 3 27 27 H 1.08999 * 109.47493 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46946 * 300.00044 * 3 2 1 29 29 H 1.08996 * 109.47054 * 59.99548 * 3 2 1 30 30 H 1.08995 * 109.47354 * 59.99912 * 5 4 2 31 31 H 1.09003 * 109.46695 * 299.99832 * 5 4 2 32 32 H 1.08995 * 109.47243 * 59.99779 * 6 5 4 33 33 H 1.08996 * 109.46877 * 299.99456 * 6 5 4 34 34 H 1.08996 * 109.88310 * 300.50411 * 10 9 7 35 35 H 1.09002 * 109.88672 * 61.51452 * 10 9 7 36 36 H 1.09000 * 110.72348 * 263.82382 * 11 10 9 37 37 H 1.09003 * 110.71705 * 140.55404 * 11 10 9 38 38 H 0.96708 * 113.99322 * 67.80350 * 13 12 11 39 39 H 0.96999 * 120.00046 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.36865 * 37.00989 * 22 9 7 41 41 H 1.09001 * 110.37117 * 274.68307 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7079 -2.6927 2.2946 7 6 2.9117 -4.1740 2.1068 8 8 2.6746 -4.6876 1.0340 9 7 3.3584 -4.9279 3.1308 10 6 3.6851 -4.4368 4.4776 11 6 4.1793 -5.6463 5.2988 12 6 4.6400 -6.6447 4.2042 13 8 5.9625 -6.3400 3.7567 14 6 4.5533 -8.0658 4.6982 15 1 3.8296 -8.7432 4.2697 16 6 5.3980 -8.5010 5.6973 17 7 6.2796 -7.6762 6.2187 18 14 5.2901 -10.2624 6.3102 19 1 4.2248 -10.9811 5.5659 20 1 6.5916 -10.9432 6.0914 21 1 4.9685 -10.2632 7.7599 22 6 3.6005 -6.3814 3.0860 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 2.9320 -2.2467 0.1987 31 1 1.2538 -2.5434 0.7124 32 1 1.9757 -2.5242 3.0842 33 1 3.6541 -2.2276 2.5711 34 1 4.4707 -3.6838 4.4171 35 1 2.7966 -4.0088 4.9418 36 1 3.3668 -6.0694 5.8895 37 1 5.0152 -5.3625 5.9383 38 1 6.6473 -6.4893 4.4229 39 1 6.8736 -7.9823 6.9219 40 1 4.0060 -6.6687 2.1158 41 1 2.6784 -6.9261 3.2890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -165.246441 kcal Electronic energy + Delta-G solvation = -21246.323048 eV Core-core repulsion = 17931.997694 eV Total energy + Delta-G solvation = -3314.325355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13448 -39.48217 -38.82955 -36.11561 -34.30657 -34.13797 -32.25211 -31.14934 -29.93996 -28.10891 -27.17504 -24.85941 -23.44494 -22.25875 -21.53704 -20.14951 -19.17760 -18.46458 -17.37362 -17.24355 -16.96050 -16.72079 -16.16762 -15.87189 -15.67363 -15.29878 -14.79261 -14.58701 -14.03078 -13.83239 -13.70642 -13.52883 -13.29336 -13.20636 -13.06635 -13.04800 -12.74615 -12.63848 -12.47020 -12.37860 -12.25086 -12.12174 -11.87061 -11.60026 -11.30834 -10.98960 -10.64229 -10.55714 -10.14876 -9.60049 -8.25650 -6.39988 1.41160 1.45712 1.55039 1.57085 1.89213 2.39386 2.76354 2.99610 3.60305 3.81266 3.91379 3.97421 4.02618 4.14222 4.16967 4.30242 4.36183 4.37217 4.45639 4.60023 4.64338 4.74827 4.77658 4.79668 4.89218 4.92494 4.93909 4.98635 5.17923 5.26643 5.29362 5.34975 5.44558 5.53044 5.77441 6.04949 6.24482 6.58267 6.64616 7.08597 7.31408 7.45186 8.80892 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.051890 B = 0.003304 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.471527 B = 8473.031495 C = 8640.910763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 C -0.146 4.146 4 O -0.395 6.395 5 C 0.086 3.914 6 C -0.121 4.121 7 C 0.522 3.478 8 O -0.595 6.595 9 N -0.609 5.609 10 C 0.105 3.895 11 C -0.131 4.131 12 C 0.233 3.767 13 O -0.596 6.596 14 C -0.560 4.560 15 H 0.056 0.944 16 C 0.035 3.965 17 N -0.910 5.910 18 Si 0.962 3.038 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.274 1.274 22 C 0.124 3.876 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.381 0.619 39 H 0.272 0.728 40 H 0.045 0.955 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 14.988 -4.816 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 C -0.203 4.203 4 O -0.315 6.315 5 C 0.009 3.991 6 C -0.161 4.161 7 C 0.313 3.687 8 O -0.477 6.477 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.170 4.170 12 C 0.192 3.808 13 O -0.406 6.406 14 C -0.598 4.598 15 H 0.075 0.925 16 C -0.166 4.166 17 N -0.549 5.549 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.200 1.200 22 C 0.001 3.999 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.366 15.047 -5.663 18.123 hybrid contribution 0.497 -1.601 0.667 1.805 sum -7.869 13.445 -4.996 16.360 Atomic orbital electron populations 1.22285 0.95126 1.02181 1.03402 1.22346 0.94503 0.94440 0.87524 1.21865 1.01597 0.93381 1.03423 1.87826 1.86977 1.19607 1.37131 1.21989 0.99777 0.81232 0.96084 1.21375 1.05644 0.88769 1.00288 1.20700 0.76114 0.89727 0.82160 1.90645 1.54353 1.75677 1.27054 1.48663 1.63672 1.09037 1.12755 1.22241 1.00844 0.97504 0.81093 1.23003 1.00762 0.94982 0.98214 1.19799 0.80017 0.92428 0.88524 1.86087 1.18557 1.90264 1.45695 1.21732 1.20287 0.97344 1.20461 0.92536 1.25625 0.94186 1.01474 0.95332 1.69624 1.21352 1.36465 1.27503 0.85446 0.77871 0.79794 0.78103 1.19814 1.20707 1.19991 1.22165 0.97995 0.80538 0.99194 0.91773 0.89817 0.93319 0.92118 0.92391 0.89269 0.91810 0.93523 0.93109 0.86084 0.86858 0.90743 0.88897 0.91503 0.90958 0.76704 0.91791 0.93623 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.53 71.98 0.69 -2.06 16 2 C 0.07 1.29 3.34 30.59 0.10 1.39 16 3 C -0.15 -2.11 9.56 71.98 0.69 -1.42 16 4 O -0.40 -9.46 9.99 -148.98 -1.49 -10.94 16 5 C 0.09 2.26 5.04 71.98 0.36 2.62 16 6 C -0.12 -3.20 5.26 29.85 0.16 -3.04 16 7 C 0.52 19.07 7.85 87.66 0.69 19.76 16 8 O -0.60 -25.96 16.24 -3.04 -0.05 -26.01 16 9 N -0.61 -23.42 3.33 -811.75 -2.70 -26.12 16 10 C 0.10 3.49 6.49 86.73 0.56 4.05 16 11 C -0.13 -5.40 5.64 31.78 0.18 -5.22 16 12 C 0.23 11.23 0.89 -10.14 -0.01 11.22 16 13 O -0.60 -30.91 13.18 -148.98 -1.96 -32.88 16 14 C -0.56 -29.14 8.25 25.60 0.21 -28.93 16 15 H 0.06 2.96 7.77 -2.91 -0.02 2.94 16 16 C 0.03 1.76 5.30 84.65 0.45 2.20 16 17 N -0.91 -46.12 10.79 21.45 0.23 -45.89 16 18 Si 0.96 40.77 29.54 68.60 2.03 42.80 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 C 0.12 5.60 6.08 86.86 0.53 6.13 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.86 7.87 -2.38 -0.02 0.84 16 26 H 0.06 1.12 7.79 -2.39 -0.02 1.10 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.30 8.04 -2.39 -0.02 1.28 16 31 H 0.05 1.37 7.83 -2.39 -0.02 1.35 16 32 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 37 H 0.07 3.13 7.85 -2.39 -0.02 3.11 16 38 H 0.38 19.97 6.93 -74.05 -0.51 19.46 16 39 H 0.27 13.10 8.31 -92.71 -0.77 12.32 16 40 H 0.05 2.25 8.04 -2.39 -0.02 2.23 16 41 H 0.07 3.23 8.01 -2.39 -0.02 3.21 16 Total: -1.00 -60.86 337.34 1.15 -59.71 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.49 Total: 32.64 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 4.60 Total: 6.69 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.47 Total: -72.01 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -3.50 Total: -69.83 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -60.86 1.15 -59.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.539 kcal (2) G-P(sol) polarization free energy of solvation -60.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds