Wall clock time and date at job start Mon Mar 30 2020 01:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46954 * 2 1 4 4 C 1.52998 * 109.47249 * 240.00132 * 2 1 3 5 5 C 1.53006 * 109.47321 * 119.99749 * 2 1 3 6 6 H 1.08990 * 109.47123 * 304.99325 * 5 2 1 7 7 O 1.42902 * 109.47031 * 184.98469 * 5 2 1 8 8 C 1.50701 * 109.46644 * 64.99061 * 5 2 1 9 9 O 1.21283 * 120.00159 * 94.43254 * 8 5 2 10 10 N 1.34779 * 120.00114 * 274.42522 * 8 5 2 11 11 C 1.47425 * 125.64593 * 354.29888 * 10 8 5 12 12 C 1.55392 * 104.87244 * 204.16504 * 11 10 8 13 13 C 1.55161 * 101.36117 * 323.01426 * 12 11 10 14 14 O 1.42902 * 110.71831 * 277.04257 * 13 12 11 15 15 C 1.50698 * 110.71859 * 153.94935 * 13 12 11 16 16 H 1.08000 * 120.00249 * 243.84586 * 15 13 12 17 17 C 1.37877 * 120.00300 * 63.84048 * 15 13 12 18 18 N 1.31517 * 119.99938 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00388 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47219 * 89.99861 * 19 17 15 21 21 H 1.48504 * 109.47122 * 209.99938 * 19 17 15 22 22 H 1.48503 * 109.46845 * 330.00009 * 19 17 15 23 23 C 1.47016 * 125.64688 * 174.33064 * 10 8 5 24 24 H 1.09002 * 109.46983 * 294.89626 * 1 2 3 25 25 H 1.08998 * 109.47400 * 54.89949 * 1 2 3 26 26 H 1.09000 * 109.47340 * 174.90402 * 1 2 3 27 27 H 1.09007 * 109.47164 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47163 * 299.99863 * 3 2 1 29 29 H 1.09001 * 109.47399 * 60.00105 * 3 2 1 30 30 H 1.09005 * 109.47078 * 299.99658 * 4 2 1 31 31 H 1.08999 * 109.47258 * 59.99898 * 4 2 1 32 32 H 1.08998 * 109.47783 * 179.97438 * 4 2 1 33 33 H 0.96699 * 114.00144 * 300.00574 * 7 5 2 34 34 H 1.09004 * 110.36525 * 322.99607 * 11 10 8 35 35 H 1.08998 * 110.37041 * 85.20781 * 11 10 8 36 36 H 1.08993 * 111.18963 * 204.98028 * 12 11 10 37 37 H 1.08996 * 111.02631 * 80.97532 * 12 11 10 38 38 H 0.96698 * 114.00300 * 296.15517 * 14 13 12 39 39 H 0.96996 * 120.00431 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.88209 * 59.49385 * 23 10 8 41 41 H 1.08997 * 109.88653 * 298.32155 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6056 -0.2616 2.1369 7 8 3.4643 -0.6206 1.3092 8 6 1.6411 -2.1732 1.1890 9 8 2.4116 -2.9957 0.7409 10 7 0.4282 -2.5579 1.6333 11 6 -0.5549 -1.6902 2.3071 12 6 -1.4376 -2.6600 3.1408 13 6 -1.5253 -3.8850 2.1925 14 8 -2.5499 -3.6950 1.2147 15 6 -1.7665 -5.1495 2.9760 16 1 -1.0243 -5.9340 2.9772 17 6 -2.9349 -5.3049 3.6915 18 7 -3.8386 -4.3494 3.6906 19 14 -3.2336 -6.8720 4.6632 20 1 -2.7037 -6.7088 6.0409 21 1 -4.6917 -7.1471 4.7230 22 1 -2.5428 -8.0060 3.9983 23 6 -0.1334 -3.9124 1.5266 24 1 -0.3633 0.4326 0.9322 25 1 -0.3634 0.5909 -0.8407 26 1 -0.3634 -1.0236 -0.0913 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 3.9184 -1.0100 0.5495 34 1 -0.0487 -0.9808 2.9620 35 1 -1.1607 -1.1608 1.5717 36 1 -2.4248 -2.2357 3.3233 37 1 -0.9489 -2.9257 4.0781 38 1 -3.4409 -3.6332 1.5854 39 1 -4.6603 -4.4586 4.1942 40 1 0.5113 -4.6227 2.0443 41 1 -0.2298 -4.1922 0.4776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:39 Heat of formation + Delta-G solvation = -164.166374 kcal Electronic energy + Delta-G solvation = -22788.543147 eV Core-core repulsion = 19474.264627 eV Total energy + Delta-G solvation = -3314.278519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75379 -39.57049 -38.17476 -36.36994 -35.60457 -34.18535 -31.64640 -30.33571 -28.57836 -28.25767 -27.94008 -26.52494 -23.92269 -21.81524 -20.99743 -19.99575 -19.26505 -18.56672 -17.65139 -17.39633 -16.92333 -16.22192 -16.07196 -15.83226 -15.49125 -14.87305 -14.68974 -14.27426 -14.06028 -13.92379 -13.72923 -13.39398 -13.28347 -13.24621 -12.94754 -12.89709 -12.72655 -12.60416 -12.50093 -12.43598 -12.29525 -12.00105 -11.92700 -11.68096 -11.34118 -11.26422 -10.69035 -10.47191 -10.13985 -9.64152 -8.26657 -6.40505 1.39937 1.43420 1.48327 1.52081 1.95572 2.38542 2.98793 3.25619 3.43830 3.59533 3.75057 3.84273 3.95835 4.03273 4.22004 4.35281 4.40245 4.48119 4.56023 4.64038 4.72874 4.78107 4.85705 4.89202 4.98790 5.02703 5.10546 5.14996 5.21621 5.27020 5.36337 5.44977 5.48314 5.51668 5.75215 6.05761 6.43055 6.57598 6.63601 7.03921 7.30222 7.41796 8.79481 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035047 B = 0.005102 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.742381 B = 5487.244726 C = 5755.480375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.147 4.147 5 C 0.112 3.888 6 H 0.132 0.868 7 O -0.544 6.544 8 C 0.495 3.505 9 O -0.587 6.587 10 N -0.602 5.602 11 C 0.093 3.907 12 C -0.128 4.128 13 C 0.238 3.762 14 O -0.591 6.591 15 C -0.566 4.566 16 H 0.048 0.952 17 C 0.040 3.960 18 N -0.905 5.905 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.277 1.277 22 H -0.279 1.279 23 C 0.129 3.871 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.387 0.613 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.381 0.619 39 H 0.273 0.727 40 H 0.053 0.947 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 12.850 -4.392 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.085 4.085 3 C -0.185 4.185 4 C -0.204 4.204 5 C 0.049 3.951 6 H 0.149 0.851 7 O -0.351 6.351 8 C 0.285 3.715 9 O -0.469 6.469 10 N -0.335 5.335 11 C -0.029 4.029 12 C -0.167 4.167 13 C 0.198 3.802 14 O -0.400 6.400 15 C -0.604 4.604 16 H 0.066 0.934 17 C -0.161 4.161 18 N -0.544 5.544 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.202 1.202 22 H -0.204 1.204 23 C 0.006 3.994 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.237 0.763 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.719 12.787 -4.435 15.111 hybrid contribution -0.747 -1.803 0.436 1.999 sum 5.972 10.985 -3.999 13.127 Atomic orbital electron populations 1.22210 0.93297 1.01795 1.03808 1.21105 0.96820 0.97451 0.93102 1.21734 1.01653 0.92055 1.03009 1.21931 1.01575 0.99132 0.97788 1.22050 0.82869 0.88498 1.01652 0.85099 1.86526 1.16371 1.81794 1.50386 1.21918 0.79748 0.93104 0.76732 1.90631 1.51568 1.55684 1.48979 1.48701 1.15905 1.11570 1.57366 1.22985 0.90442 0.93405 0.96021 1.23195 0.99487 0.96349 0.97664 1.19530 0.83170 0.92845 0.84666 1.86093 1.19966 1.95923 1.38066 1.21744 1.04559 1.03444 1.30640 0.93361 1.25538 0.95204 0.99280 0.96117 1.69677 1.08953 1.33398 1.42329 0.85580 0.77458 0.79829 0.78869 1.19962 1.20164 1.20390 1.21770 0.94493 0.83918 0.99246 0.90482 0.90416 0.94116 0.91818 0.90902 0.91525 0.95305 0.90360 0.91590 0.76275 0.88719 0.89147 0.90002 0.92731 0.76803 0.91758 0.92852 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 6.49 71.98 0.47 -2.88 16 2 C -0.08 -1.79 0.63 -52.18 -0.03 -1.82 16 3 C -0.13 -2.02 8.28 71.98 0.60 -1.42 16 4 C -0.15 -3.36 7.83 71.98 0.56 -2.79 16 5 C 0.11 2.94 2.42 29.85 0.07 3.02 16 6 H 0.13 3.06 6.66 -2.39 -0.02 3.05 16 7 O -0.54 -14.36 12.29 -131.32 -1.61 -15.98 16 8 C 0.50 17.85 5.35 87.66 0.47 18.32 16 9 O -0.59 -25.15 16.03 14.62 0.23 -24.92 16 10 N -0.60 -22.89 2.70 -810.83 -2.19 -25.08 16 11 C 0.09 3.05 5.08 87.03 0.44 3.49 16 12 C -0.13 -5.32 5.61 32.16 0.18 -5.14 16 13 C 0.24 11.41 0.85 -10.35 -0.01 11.40 16 14 O -0.59 -29.21 13.07 -148.98 -1.95 -31.16 16 15 C -0.57 -29.93 8.21 25.60 0.21 -29.72 16 16 H 0.05 2.63 7.55 -2.91 -0.02 2.60 16 17 C 0.04 2.04 5.28 84.65 0.45 2.49 16 18 N -0.90 -45.28 10.67 21.45 0.23 -45.05 16 19 Si 0.96 41.19 29.54 68.60 2.03 43.21 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.13 5.91 6.22 86.73 0.54 6.45 16 24 H 0.08 1.45 6.88 -2.39 -0.02 1.44 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.15 5.85 -2.39 -0.01 1.14 16 27 H 0.06 1.02 7.56 -2.38 -0.02 1.00 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.85 6.71 -2.38 -0.02 0.84 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.35 6.89 -2.39 -0.02 1.34 16 33 H 0.39 9.15 7.11 -74.06 -0.53 8.62 16 34 H 0.09 2.47 6.92 -2.38 -0.02 2.45 16 35 H 0.09 2.75 5.25 -2.39 -0.01 2.73 16 36 H 0.08 3.49 7.64 -2.39 -0.02 3.47 16 37 H 0.05 2.37 8.04 -2.39 -0.02 2.35 16 38 H 0.38 18.93 7.23 -74.06 -0.54 18.39 16 39 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 40 H 0.05 2.59 7.65 -2.39 -0.02 2.57 16 41 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -60.41 314.74 0.67 -59.74 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.01 Total: 37.85 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 3.94 Total: 1.38 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.96 Total: -70.13 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -3.33 Total: -72.06 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -60.41 0.67 -59.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.426 kcal (2) G-P(sol) polarization free energy of solvation -60.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds