Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.52997 * 109.47240 * 120.00371 * 2 1 3 5 5 C 1.52999 * 109.47027 * 239.99975 * 2 1 3 6 6 H 1.09006 * 109.47258 * 185.41146 * 5 2 1 7 7 O 1.42900 * 109.47296 * 65.40881 * 5 2 1 8 8 C 1.50703 * 109.47302 * 305.41082 * 5 2 1 9 9 O 1.21280 * 120.00361 * 90.46337 * 8 5 2 10 10 N 1.34782 * 119.99881 * 270.46555 * 8 5 2 11 11 C 1.47020 * 125.64645 * 354.68602 * 10 8 5 12 12 C 1.54325 * 107.26808 * 181.02245 * 11 10 8 13 13 C 1.55156 * 102.94412 * 22.19161 * 12 11 10 14 14 O 1.42899 * 111.00321 * 82.57149 * 13 12 11 15 15 C 1.50698 * 111.00672 * 206.38579 * 13 12 11 16 16 H 1.07994 * 120.00262 * 118.54413 * 15 13 12 17 17 C 1.37885 * 119.99615 * 298.54910 * 15 13 12 18 18 N 1.31505 * 120.00274 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99563 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47235 * 89.99852 * 19 17 15 21 21 H 1.48496 * 109.47008 * 209.99684 * 19 17 15 22 22 H 1.48497 * 109.47112 * 329.99790 * 19 17 15 23 23 C 1.47424 * 125.64797 * 174.37979 * 10 8 5 24 24 H 1.08997 * 109.47523 * 60.00152 * 1 2 3 25 25 H 1.09009 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47221 * 299.99773 * 1 2 3 27 27 H 1.09001 * 109.46792 * 59.99964 * 3 2 1 28 28 H 1.08999 * 109.47194 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46595 * 300.00369 * 3 2 1 30 30 H 1.08994 * 109.47423 * 56.31408 * 4 2 1 31 31 H 1.08997 * 109.47194 * 176.31934 * 4 2 1 32 32 H 1.09007 * 109.47109 * 296.31406 * 4 2 1 33 33 H 0.96701 * 114.00124 * 299.99881 * 7 5 2 34 34 H 1.08999 * 109.88027 * 300.43567 * 11 10 8 35 35 H 1.08996 * 109.88470 * 61.60254 * 11 10 8 36 36 H 1.09007 * 110.72157 * 140.55513 * 12 11 10 37 37 H 1.08993 * 110.71893 * 263.64760 * 12 11 10 38 38 H 0.96700 * 114.00267 * 61.45462 * 14 13 12 39 39 H 0.97002 * 120.00033 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.35956 * 274.74786 * 23 10 8 41 41 H 1.08997 * 110.36667 * 37.06515 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0399 -0.7213 -1.2492 6 1 3.1257 -0.8060 -1.2021 7 8 1.6701 0.0217 -2.4126 8 6 1.4312 -2.0981 -1.3181 9 8 0.3834 -2.2694 -1.9044 10 7 2.0512 -3.1393 -0.7280 11 6 3.3717 -3.0967 -0.0831 12 6 3.6795 -4.5209 0.4252 13 6 2.7665 -5.4105 -0.4594 14 8 3.3771 -5.6723 -1.7246 15 6 2.4183 -6.6962 0.2454 16 1 1.3875 -6.9269 0.4700 17 6 3.4160 -7.5780 0.6036 18 7 4.6712 -7.2974 0.3298 19 14 2.9844 -9.1714 1.4779 20 1 2.7443 -10.2381 0.4731 21 1 4.1075 -9.5697 2.3639 22 1 1.7582 -8.9730 2.2918 23 6 1.5147 -4.5080 -0.6169 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6238 -1.7281 1.2828 31 1 3.1279 -0.7788 1.2168 32 1 1.7316 -0.1708 2.1380 33 1 0.7159 0.1366 -2.5190 34 1 4.1275 -2.7897 -0.8060 35 1 3.3526 -2.4000 0.7549 36 1 4.7292 -4.7684 0.2671 37 1 3.4158 -4.6199 1.4781 38 1 4.2156 -6.1503 -1.6653 39 1 5.3730 -7.9179 0.5815 40 1 0.8704 -4.5929 0.2582 41 1 0.9663 -4.7750 -1.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = -143.861452 kcal Electronic energy + Delta-G solvation = -22746.889413 eV Core-core repulsion = 19433.491381 eV Total energy + Delta-G solvation = -3313.398032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37438 -38.04539 -36.71369 -34.93499 -34.19256 -32.25287 -30.02739 -28.74476 -27.38064 -27.23824 -26.88553 -24.78767 -22.32074 -20.19990 -19.57757 -18.81012 -17.41146 -17.12156 -16.38220 -15.74631 -15.03776 -14.97921 -14.66591 -14.38730 -14.08047 -13.46342 -13.25024 -13.09789 -12.77134 -12.56477 -12.31139 -12.03898 -11.94698 -11.81423 -11.66117 -11.47295 -11.35756 -11.30725 -10.99169 -10.96204 -10.84842 -10.54421 -10.49608 -10.23688 -10.03750 -9.44117 -9.09931 -8.70615 -8.24406 -8.01249 -6.31374 -4.39593 2.92666 3.18174 3.25694 3.28258 3.46954 4.24242 4.37941 4.58176 4.66763 4.79676 4.95140 5.02236 5.31630 5.40410 5.51585 5.55113 5.62647 5.65003 5.72962 5.79046 5.84935 5.87974 5.95917 5.98857 6.09836 6.22129 6.26868 6.31611 6.40320 6.61017 6.84716 6.92229 7.25758 7.31161 7.55116 7.70212 7.98517 8.08462 8.53874 8.63425 9.27919 9.37047 10.75995 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033647 B = 0.005018 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.966154 B = 5578.663239 C = 5698.066863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.153 4.153 5 C 0.104 3.896 6 H 0.115 0.885 7 O -0.541 6.541 8 C 0.501 3.499 9 O -0.553 6.553 10 N -0.599 5.599 11 C 0.081 3.919 12 C -0.135 4.135 13 C 0.248 3.752 14 O -0.582 6.582 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.118 3.882 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.380 0.620 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 13.257 2.981 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.210 4.210 5 C 0.041 3.959 6 H 0.132 0.868 7 O -0.347 6.347 8 C 0.289 3.711 9 O -0.432 6.432 10 N -0.332 5.332 11 C -0.041 4.041 12 C -0.174 4.174 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.004 4.004 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.229 0.771 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.000 13.510 2.350 13.858 hybrid contribution -0.085 -1.316 0.858 1.573 sum -2.085 12.195 3.208 12.781 Atomic orbital electron populations 1.21941 0.93788 1.03018 1.01769 1.21104 0.96826 0.96563 0.94698 1.21765 1.01104 0.94224 1.01967 1.22159 1.01377 1.01050 0.96378 1.21935 1.00336 0.87627 0.85989 0.86783 1.86547 1.29631 1.74332 1.44151 1.20965 0.85154 0.86486 0.78490 1.90649 1.23934 1.85148 1.43493 1.48637 1.19528 1.10255 1.54805 1.22586 0.83842 1.01203 0.96510 1.23167 1.02917 0.90880 1.00417 1.19637 0.86960 0.91249 0.81399 1.86149 1.41875 1.79620 1.31414 1.21440 0.94122 1.03753 1.38089 0.91768 1.24979 0.94790 0.98337 0.94805 1.69712 0.99389 1.36992 1.47315 0.86427 0.78163 0.83002 0.79455 1.20392 1.21053 1.19718 1.22432 0.97521 0.79295 1.01115 0.92465 0.91671 0.92227 0.92505 0.92467 0.91891 0.91409 0.91660 0.92041 0.77053 0.92466 0.91394 0.89539 0.91335 0.76989 0.92214 0.91033 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.77 37.16 0.29 -1.47 16 2 C -0.09 -1.07 0.63 -154.51 -0.10 -1.17 16 3 C -0.13 -1.30 8.27 37.16 0.31 -1.00 16 4 C -0.15 -1.75 6.68 37.16 0.25 -1.50 16 5 C 0.10 1.50 2.43 -27.88 -0.07 1.44 16 6 H 0.11 1.60 7.10 -51.93 -0.37 1.23 16 7 O -0.54 -7.91 12.30 -53.14 -0.65 -8.56 16 8 C 0.50 9.26 5.34 -10.98 -0.06 9.20 16 9 O -0.55 -11.76 15.68 -12.35 -0.19 -11.95 16 10 N -0.60 -11.52 2.75 -170.38 -0.47 -11.98 16 11 C 0.08 1.41 5.57 -3.06 -0.02 1.39 16 12 C -0.14 -2.80 5.37 -24.90 -0.13 -2.94 16 13 C 0.25 5.88 0.87 -89.51 -0.08 5.80 16 14 O -0.58 -14.78 13.17 -35.23 -0.46 -15.25 16 15 C -0.54 -13.72 8.27 -34.44 -0.28 -14.01 16 16 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 17 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 18 N -0.90 -22.62 10.76 55.43 0.60 -22.03 16 19 Si 0.90 19.90 29.54 -169.99 -5.02 14.87 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 C 0.12 2.60 6.12 -2.41 -0.01 2.58 16 24 H 0.06 0.63 6.90 -51.93 -0.36 0.27 16 25 H 0.06 0.94 6.57 -51.92 -0.34 0.60 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 30 H 0.07 0.92 6.26 -51.93 -0.32 0.59 16 31 H 0.06 0.69 6.66 -51.93 -0.35 0.35 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.38 4.87 7.13 45.56 0.32 5.20 16 34 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 35 H 0.07 0.98 4.20 -51.93 -0.22 0.76 16 36 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 37 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 38 H 0.38 9.58 7.56 45.56 0.34 9.92 16 39 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 40 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 41 H 0.07 1.68 7.99 -51.93 -0.41 1.26 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -28.29 316.25 -6.41 -34.70 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -4.97 Total: 15.33 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 0.00 Total: 0.10 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.13 Total: -34.01 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.31 Total: -35.76 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.29 -6.41 -34.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.162 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds