Wall clock time and date at job start Mon Mar 30 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 C 1.53004 * 109.47309 * 119.99962 * 2 1 3 5 5 C 1.53000 * 109.47298 * 174.99913 * 4 2 1 6 6 O 1.45193 * 109.47090 * 180.02562 * 5 4 2 7 7 C 1.34632 * 117.00236 * 180.02562 * 6 5 4 8 8 O 1.21513 * 120.00185 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00387 * 179.97438 * 7 6 5 10 10 C 1.47422 * 125.64926 * 0.02614 * 9 7 6 11 11 C 1.54909 * 104.83564 * 155.82503 * 10 9 7 12 12 C 1.55152 * 101.58032 * 37.00513 * 11 10 9 13 13 O 1.42903 * 110.72100 * 82.86680 * 12 11 10 14 14 C 1.50703 * 110.71825 * 205.95483 * 12 11 10 15 15 H 1.07993 * 120.00249 * 357.56786 * 14 12 11 16 16 C 1.37877 * 119.99923 * 177.55974 * 14 12 11 17 17 N 1.31521 * 120.00053 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00236 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46913 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47079 * 119.99981 * 18 16 14 21 21 H 1.48501 * 109.46992 * 240.00088 * 18 16 14 22 22 C 1.47027 * 125.65206 * 179.97438 * 9 7 6 23 23 H 1.08994 * 109.47148 * 299.99893 * 1 2 3 24 24 H 1.08999 * 109.47054 * 59.99996 * 1 2 3 25 25 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47071 * 240.00111 * 2 1 3 27 27 H 1.09006 * 109.46830 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47151 * 299.99944 * 3 2 1 29 29 H 1.08993 * 109.47436 * 60.00349 * 3 2 1 30 30 H 1.09000 * 109.46999 * 55.00043 * 4 2 1 31 31 H 1.08996 * 109.47067 * 295.00408 * 4 2 1 32 32 H 1.08997 * 109.47197 * 59.99646 * 5 4 2 33 33 H 1.09005 * 109.46954 * 300.00033 * 5 4 2 34 34 H 1.09002 * 110.36847 * 36.97758 * 10 9 7 35 35 H 1.09005 * 110.45737 * 274.70993 * 10 9 7 36 36 H 1.09005 * 111.00113 * 278.93173 * 11 10 9 37 37 H 1.08998 * 111.03822 * 155.09465 * 11 10 9 38 38 H 0.96700 * 114.00311 * 179.97438 * 13 12 11 39 39 H 0.97000 * 119.99959 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.87825 * 61.68763 * 22 9 7 41 41 H 1.09001 * 109.88209 * 300.52818 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8311 1.1880 6 8 4.0488 -1.5160 2.3732 7 6 5.3792 -1.6952 2.4753 8 8 6.1159 -1.2906 1.5977 9 7 5.8941 -2.3233 3.5508 10 6 5.1196 -2.8624 4.6834 11 6 6.0184 -3.9705 5.2868 12 6 7.4306 -3.3485 5.1252 13 8 7.7129 -2.4492 6.1992 14 6 8.4815 -4.4257 5.0441 15 1 8.1993 -5.4637 5.1396 16 6 9.8032 -4.0858 4.8479 17 7 10.1470 -2.8217 4.7319 18 14 11.1058 -5.4209 4.7467 19 1 10.4649 -6.7509 4.9069 20 1 11.7829 -5.3529 3.4269 21 1 12.1051 -5.2203 5.8267 22 6 7.3212 -2.5852 3.7885 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1369 32 1 3.9995 0.1674 1.1420 33 1 3.8532 -1.3940 0.3002 34 1 4.1789 -3.2863 4.3321 35 1 4.9313 -2.0828 5.4217 36 1 5.9318 -4.8965 4.7182 37 1 5.7825 -4.1364 6.3379 38 1 8.5844 -2.0336 6.1455 39 1 11.0769 -2.5826 4.5942 40 1 7.8651 -1.6428 3.8541 41 1 7.7261 -3.1937 2.9799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859203467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:38 Heat of formation + Delta-G solvation = -150.061087 kcal Electronic energy + Delta-G solvation = -21412.981185 eV Core-core repulsion = 18099.314317 eV Total energy + Delta-G solvation = -3313.666868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98338 -38.08953 -36.93130 -35.49098 -34.34150 -32.21981 -30.44343 -29.54771 -27.84623 -27.41306 -25.33729 -23.56782 -22.47770 -20.38638 -19.96574 -19.49675 -17.45141 -17.17516 -16.44259 -16.35562 -15.35932 -15.12898 -14.58607 -14.31223 -14.11092 -13.94839 -13.23846 -13.04580 -12.91830 -12.77003 -12.47683 -12.17012 -11.93791 -11.74719 -11.65254 -11.42475 -11.13649 -11.08876 -10.94949 -10.84500 -10.82624 -10.63736 -10.49727 -10.22670 -10.15639 -9.94888 -9.35043 -8.70877 -8.37196 -7.97103 -6.31997 -4.40853 2.60528 3.19331 3.28124 3.31638 3.39067 4.23513 4.33433 4.62089 4.65553 4.83608 4.96197 5.07468 5.24541 5.39394 5.39703 5.44597 5.45245 5.57522 5.66344 5.71041 5.78315 5.82200 5.83240 5.92359 6.05144 6.10128 6.13457 6.17040 6.49547 6.67310 6.78992 6.83381 6.92070 7.22898 7.33811 7.70584 7.96306 8.18119 8.62885 8.86317 9.27705 9.37850 10.75786 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003638 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.846535 B = 7694.373338 C = 7945.757876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.115 4.115 5 C 0.085 3.915 6 O -0.374 6.374 7 C 0.655 3.345 8 O -0.583 6.583 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.118 4.118 12 C 0.248 3.752 13 O -0.584 6.584 14 C -0.536 4.536 15 H 0.069 0.931 16 C 0.069 3.931 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.120 3.880 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.385 0.615 39 H 0.271 0.729 40 H 0.067 0.933 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 3.987 -5.591 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.212 4.212 4 C -0.152 4.152 5 C 0.010 3.990 6 O -0.289 6.289 7 C 0.409 3.591 8 O -0.473 6.473 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.156 4.156 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.575 4.575 15 H 0.087 0.913 16 C -0.134 4.134 17 N -0.534 5.534 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.000 4.000 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.345 4.121 -5.805 16.916 hybrid contribution 1.428 -0.343 -0.456 1.538 sum -13.917 3.778 -6.260 15.720 Atomic orbital electron populations 1.21815 0.94673 1.01895 1.01882 1.21040 0.96028 0.96450 0.97717 1.21955 1.01570 0.95735 1.01900 1.21643 0.92932 1.01814 0.98848 1.22941 0.93950 0.96751 0.85339 1.86202 1.23381 1.73881 1.45438 1.17653 0.80489 0.78647 0.82299 1.90951 1.59838 1.55648 1.40862 1.47604 1.10375 1.57164 1.18351 1.22302 0.94629 0.96656 0.87991 1.22775 0.95361 0.96683 1.00794 1.19505 0.91081 0.86705 0.81944 1.86096 1.41106 1.62860 1.49303 1.21547 0.91598 0.93387 1.50940 0.91266 1.25107 0.98948 0.96017 0.93337 1.69651 1.18838 1.16058 1.48849 0.86314 0.80991 0.81621 0.77800 1.19541 1.20744 1.20707 1.23117 0.75221 1.00786 1.00922 0.92515 0.92543 0.92538 0.90836 0.92188 0.92586 0.92434 0.90808 0.90777 0.91309 0.91612 0.91610 0.91691 0.90415 0.90291 0.76380 0.91918 0.91466 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.69 16 2 C -0.09 -0.80 2.92 -90.62 -0.26 -1.06 16 3 C -0.15 -1.30 8.95 37.16 0.33 -0.97 16 4 C -0.11 -1.19 5.06 -26.73 -0.14 -1.33 16 5 C 0.09 1.20 5.23 37.16 0.19 1.39 16 6 O -0.37 -6.67 9.75 -40.30 -0.39 -7.06 16 7 C 0.65 14.13 8.62 54.05 0.47 14.60 16 8 O -0.58 -14.13 16.46 -19.28 -0.32 -14.45 16 9 N -0.59 -12.97 3.33 -176.30 -0.59 -13.56 16 10 C 0.11 2.00 6.91 -2.53 -0.02 1.99 16 11 C -0.12 -2.37 6.22 -24.59 -0.15 -2.52 16 12 C 0.25 6.00 0.86 -89.94 -0.08 5.92 16 13 O -0.58 -14.65 13.09 -35.23 -0.46 -15.11 16 14 C -0.54 -13.87 8.12 -34.44 -0.28 -14.15 16 15 H 0.07 1.76 7.77 -52.49 -0.41 1.35 16 16 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 17 N -0.89 -23.62 10.97 55.43 0.61 -23.02 16 18 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.12 2.93 5.39 -3.07 -0.02 2.92 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.98 6.56 -51.93 -0.34 0.63 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.38 9.90 7.17 45.56 0.33 10.23 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 40 H 0.07 1.78 8.01 -51.93 -0.42 1.37 16 41 H 0.07 1.81 7.82 -51.93 -0.41 1.40 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -28.98 335.04 -7.03 -36.01 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.20 Total: 9.12 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 0.30 Total: 7.78 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.02 Total: -36.57 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.17 Total: -36.62 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.98 -7.03 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859203467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.049 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds