Wall clock time and date at job start Mon Mar 30 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 C 1.53004 * 109.47309 * 119.99962 * 2 1 3 5 5 C 1.53000 * 109.47298 * 174.99913 * 4 2 1 6 6 O 1.45193 * 109.47090 * 180.02562 * 5 4 2 7 7 C 1.34632 * 117.00236 * 180.02562 * 6 5 4 8 8 O 1.21513 * 120.00185 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00387 * 179.97438 * 7 6 5 10 10 C 1.47422 * 125.64926 * 0.02614 * 9 7 6 11 11 C 1.54909 * 104.83564 * 155.82503 * 10 9 7 12 12 C 1.55152 * 101.58032 * 37.00513 * 11 10 9 13 13 O 1.42903 * 110.72100 * 82.86680 * 12 11 10 14 14 C 1.50703 * 110.71825 * 205.95483 * 12 11 10 15 15 H 1.07993 * 120.00249 * 357.56786 * 14 12 11 16 16 C 1.37877 * 119.99923 * 177.55974 * 14 12 11 17 17 N 1.31521 * 120.00053 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00236 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46913 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47079 * 119.99981 * 18 16 14 21 21 H 1.48501 * 109.46992 * 240.00088 * 18 16 14 22 22 C 1.47027 * 125.65206 * 179.97438 * 9 7 6 23 23 H 1.08994 * 109.47148 * 299.99893 * 1 2 3 24 24 H 1.08999 * 109.47054 * 59.99996 * 1 2 3 25 25 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47071 * 240.00111 * 2 1 3 27 27 H 1.09006 * 109.46830 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47151 * 299.99944 * 3 2 1 29 29 H 1.08993 * 109.47436 * 60.00349 * 3 2 1 30 30 H 1.09000 * 109.46999 * 55.00043 * 4 2 1 31 31 H 1.08996 * 109.47067 * 295.00408 * 4 2 1 32 32 H 1.08997 * 109.47197 * 59.99646 * 5 4 2 33 33 H 1.09005 * 109.46954 * 300.00033 * 5 4 2 34 34 H 1.09002 * 110.36847 * 36.97758 * 10 9 7 35 35 H 1.09005 * 110.45737 * 274.70993 * 10 9 7 36 36 H 1.09005 * 111.00113 * 278.93173 * 11 10 9 37 37 H 1.08998 * 111.03822 * 155.09465 * 11 10 9 38 38 H 0.96700 * 114.00311 * 179.97438 * 13 12 11 39 39 H 0.97000 * 119.99959 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.87825 * 61.68763 * 22 9 7 41 41 H 1.09001 * 109.88209 * 300.52818 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8311 1.1880 6 8 4.0488 -1.5160 2.3732 7 6 5.3792 -1.6952 2.4753 8 8 6.1159 -1.2906 1.5977 9 7 5.8941 -2.3233 3.5508 10 6 5.1196 -2.8624 4.6834 11 6 6.0184 -3.9705 5.2868 12 6 7.4306 -3.3485 5.1252 13 8 7.7129 -2.4492 6.1992 14 6 8.4815 -4.4257 5.0441 15 1 8.1993 -5.4637 5.1396 16 6 9.8032 -4.0858 4.8479 17 7 10.1470 -2.8217 4.7319 18 14 11.1058 -5.4209 4.7467 19 1 10.4649 -6.7509 4.9069 20 1 11.7829 -5.3529 3.4269 21 1 12.1051 -5.2203 5.8267 22 6 7.3212 -2.5852 3.7885 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1369 32 1 3.9995 0.1674 1.1420 33 1 3.8532 -1.3940 0.3002 34 1 4.1789 -3.2863 4.3321 35 1 4.9313 -2.0828 5.4217 36 1 5.9318 -4.8965 4.7182 37 1 5.7825 -4.1364 6.3379 38 1 8.5844 -2.0336 6.1455 39 1 11.0769 -2.5826 4.5942 40 1 7.8651 -1.6428 3.8541 41 1 7.7261 -3.1937 2.9799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859203467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:38 Heat of formation + Delta-G solvation = -168.810192 kcal Electronic energy + Delta-G solvation = -21413.794207 eV Core-core repulsion = 18099.314317 eV Total energy + Delta-G solvation = -3314.479890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62052 -39.74145 -38.07814 -36.83735 -36.19626 -34.20984 -32.02000 -30.70297 -29.64823 -28.04052 -27.20509 -24.90074 -23.89028 -21.79184 -21.41110 -20.83280 -19.23435 -18.95266 -17.97794 -17.88727 -17.10599 -16.36237 -16.23733 -15.63517 -15.38899 -14.93805 -14.82047 -14.74121 -14.50092 -14.16464 -13.54811 -13.50419 -13.42553 -13.04604 -12.88381 -12.82323 -12.60883 -12.58656 -12.33465 -12.25349 -12.13125 -11.94775 -11.85691 -11.61881 -11.56260 -11.36435 -11.20555 -10.66812 -10.34745 -9.74865 -8.28153 -6.44191 1.04897 1.42034 1.45262 1.55939 1.67383 2.37728 2.92864 2.98648 3.77580 3.81956 3.84466 3.96282 4.06538 4.14335 4.17165 4.31093 4.36553 4.40874 4.60685 4.66453 4.73609 4.80041 4.86061 4.91233 4.95920 5.01818 5.08626 5.09277 5.17636 5.25166 5.30939 5.36976 5.42939 5.46561 5.47310 5.73134 6.01346 6.47493 6.64136 7.16948 7.27132 7.35091 8.78399 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003638 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.846535 B = 7694.373338 C = 7945.757876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.156 4.156 4 C -0.105 4.105 5 C 0.077 3.923 6 O -0.364 6.364 7 C 0.655 3.345 8 O -0.617 6.617 9 N -0.601 5.601 10 C 0.111 3.889 11 C -0.111 4.111 12 C 0.234 3.766 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.071 0.929 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.278 1.278 22 C 0.136 3.864 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.036 0.964 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.972 3.265 -5.539 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.213 4.213 4 C -0.142 4.142 5 C 0.003 3.997 6 O -0.278 6.278 7 C 0.410 3.590 8 O -0.510 6.510 9 N -0.340 5.340 10 C -0.011 4.011 11 C -0.148 4.148 12 C 0.194 3.806 13 O -0.395 6.395 14 C -0.593 4.593 15 H 0.089 0.911 16 C -0.176 4.176 17 N -0.556 5.556 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.203 1.203 22 C 0.015 3.985 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.312 3.394 -5.740 18.552 hybrid contribution 1.978 -0.063 -0.520 2.046 sum -15.334 3.331 -6.260 16.894 Atomic orbital electron populations 1.21790 0.93145 1.02447 1.02559 1.21051 0.97173 0.96083 0.96683 1.21969 1.00606 0.96011 1.02700 1.21665 0.89768 1.02705 1.00092 1.23343 0.96326 0.96052 0.83988 1.86223 1.20690 1.73889 1.47006 1.17758 0.81533 0.78044 0.81675 1.90921 1.61069 1.56929 1.42110 1.47587 1.09702 1.57418 1.19342 1.22456 0.95148 0.96400 0.87072 1.22774 0.92678 0.97175 1.02204 1.19716 0.93248 0.86328 0.81349 1.86088 1.40631 1.63069 1.49741 1.21851 0.92434 0.93910 1.51101 0.91058 1.25849 1.00876 0.97862 0.93031 1.69750 1.19148 1.17504 1.49234 0.85374 0.78546 0.79462 0.77474 1.18785 1.21016 1.20311 1.22678 0.76719 0.98660 1.00477 0.92185 0.91573 0.92066 0.90752 0.93694 0.91376 0.92120 0.89996 0.90319 0.91748 0.91857 0.88257 0.90992 0.89478 0.88648 0.77163 0.91911 0.94562 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.09 -1.37 2.92 -10.79 -0.03 -1.41 16 3 C -0.16 -2.40 8.95 71.98 0.64 -1.76 16 4 C -0.10 -1.97 5.06 30.60 0.15 -1.81 16 5 C 0.08 2.10 5.23 71.98 0.38 2.47 16 6 O -0.36 -12.52 9.75 -55.42 -0.54 -13.06 16 7 C 0.65 28.20 8.62 129.79 1.12 29.32 16 8 O -0.62 -30.57 16.46 19.80 0.33 -30.24 16 9 N -0.60 -26.01 3.33 -942.10 -3.13 -29.15 16 10 C 0.11 3.91 6.91 86.86 0.60 4.51 16 11 C -0.11 -4.23 6.22 31.98 0.20 -4.03 16 12 C 0.23 11.31 0.86 -10.36 -0.01 11.30 16 13 O -0.59 -29.59 13.09 -148.98 -1.95 -31.54 16 14 C -0.55 -28.68 8.12 25.60 0.21 -28.47 16 15 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 16 C 0.02 1.28 5.26 84.65 0.45 1.72 16 17 N -0.92 -49.36 10.97 21.45 0.24 -49.13 16 18 Si 0.97 41.53 29.54 68.60 2.03 43.56 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.14 6.85 5.39 86.72 0.47 7.32 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.82 6.57 -2.38 -0.02 0.80 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.82 6.56 -2.39 -0.02 1.80 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 34 H 0.10 2.87 8.04 -2.39 -0.02 2.86 16 35 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.09 3.16 8.04 -2.38 -0.02 3.14 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.38 19.93 7.17 -74.06 -0.53 19.40 16 39 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.04 2.00 8.01 -2.39 -0.02 1.99 16 41 H 0.04 2.25 7.82 -2.39 -0.02 2.23 16 Total: -1.00 -62.40 335.04 2.27 -60.13 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.48 Total: 31.26 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 4.84 Total: 18.17 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -2.90 Total: -78.27 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -2.16 Total: -74.85 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -62.40 2.27 -60.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859203467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.682 kcal (2) G-P(sol) polarization free energy of solvation -62.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds