Wall clock time and date at job start Mon Mar 30 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47602 * 2 1 4 4 H 1.08999 * 109.47067 * 54.99282 * 3 2 1 5 5 O 1.42901 * 109.46597 * 295.00185 * 3 2 1 6 6 C 1.52995 * 109.47135 * 174.99971 * 3 2 1 7 7 H 1.09001 * 109.47125 * 60.00175 * 6 3 2 8 8 C 1.52999 * 109.47326 * 299.99820 * 6 3 2 9 9 C 1.50707 * 109.46936 * 179.97438 * 6 3 2 10 10 O 1.21277 * 119.99692 * 34.69236 * 9 6 3 11 11 N 1.34776 * 119.99667 * 214.42311 * 9 6 3 12 12 C 1.47424 * 125.64290 * 175.32154 * 11 9 6 13 13 C 1.54911 * 104.83227 * 204.08943 * 12 11 9 14 14 C 1.55155 * 101.58040 * 322.99182 * 13 12 11 15 15 O 1.42902 * 110.72083 * 277.13903 * 14 13 12 16 16 C 1.50702 * 110.72287 * 154.04224 * 14 13 12 17 17 H 1.07999 * 119.99848 * 241.45364 * 16 14 13 18 18 C 1.37876 * 119.99911 * 61.45490 * 16 14 13 19 19 N 1.31509 * 120.00140 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99809 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47106 * 89.99723 * 20 18 16 22 22 H 1.48500 * 109.47017 * 209.99635 * 20 18 16 23 23 H 1.48500 * 109.47318 * 329.99765 * 20 18 16 24 24 C 1.47016 * 125.65107 * 355.00942 * 11 9 6 25 25 H 1.09006 * 109.46975 * 300.00523 * 1 2 3 26 26 H 1.09000 * 109.47118 * 60.00016 * 1 2 3 27 27 H 1.08999 * 109.47509 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46975 * 239.99477 * 2 1 3 29 29 H 1.09000 * 109.47118 * 119.99984 * 2 1 3 30 30 H 0.96703 * 114.00030 * 299.99474 * 5 3 2 31 31 H 1.08998 * 109.47032 * 186.26557 * 8 6 3 32 32 H 1.09001 * 109.46827 * 306.26205 * 8 6 3 33 33 H 1.08996 * 109.46967 * 66.26022 * 8 6 3 34 34 H 1.09003 * 110.36871 * 322.92378 * 12 11 9 35 35 H 1.08998 * 110.37291 * 85.14231 * 12 11 9 36 36 H 1.08997 * 111.00637 * 81.06067 * 13 12 11 37 37 H 1.09003 * 111.00791 * 204.91983 * 13 12 11 38 38 H 0.96701 * 113.99886 * 298.55006 * 15 14 13 39 39 H 0.96996 * 120.00139 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.88245 * 298.39439 * 24 11 9 41 41 H 1.09000 * 109.88415 * 59.56302 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 3.5649 1.4442 0.1257 7 1 3.9994 0.9051 -0.7161 8 6 3.9696 0.7602 1.4331 9 6 4.0673 2.8650 0.1251 10 8 3.4093 3.7411 0.6450 11 7 5.2505 3.1610 -0.4485 12 6 5.8140 4.5141 -0.6064 13 6 6.7916 4.3995 -1.8026 14 6 7.3894 2.9848 -1.5818 15 8 8.4577 3.0297 -0.6337 16 6 7.8611 2.3957 -2.8862 17 1 7.4192 1.4829 -3.2576 18 6 8.8569 3.0220 -3.6054 19 7 9.3946 4.1337 -3.1533 20 14 9.4411 2.2921 -5.2226 21 1 8.6307 2.8457 -6.3370 22 1 10.8707 2.6347 -5.4325 23 1 9.2864 0.8157 -5.1839 24 6 6.1958 2.1876 -1.0143 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0142 1.6541 -2.0139 31 1 5.0455 0.8591 1.5770 32 1 3.4469 1.2303 2.2660 33 1 3.7047 -0.2961 1.3876 34 1 5.0235 5.2306 -0.8300 35 1 6.3491 4.8100 0.2959 36 1 6.2569 4.4539 -2.7508 37 1 7.5667 5.1639 -1.7485 38 1 9.2027 3.5824 -0.9066 39 1 10.0949 4.5745 -3.6594 40 1 6.5388 1.5076 -0.2346 41 1 5.7143 1.6251 -1.8142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911527130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:56 Heat of formation + Delta-G solvation = -174.850617 kcal Electronic energy + Delta-G solvation = -22199.525436 eV Core-core repulsion = 18884.783613 eV Total energy + Delta-G solvation = -3314.741823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36978 -39.49214 -38.30568 -36.01720 -34.66143 -34.18007 -32.97854 -31.28120 -30.04736 -27.01969 -26.90100 -25.41046 -23.32402 -22.00897 -21.67263 -20.07551 -19.16235 -18.17379 -17.56211 -17.11942 -16.89847 -16.46315 -16.12099 -15.86744 -15.69901 -15.14712 -14.71862 -14.39044 -14.05867 -13.90773 -13.53106 -13.39045 -13.28738 -13.16484 -13.00394 -12.91742 -12.78732 -12.64696 -12.53725 -12.34032 -12.23851 -11.98542 -11.73239 -11.59084 -11.29294 -11.00224 -10.69393 -10.55742 -10.12861 -9.61557 -8.21567 -6.36562 1.44909 1.48371 1.56394 1.62516 2.03405 2.41546 3.04426 3.37207 3.57748 3.58315 3.81265 4.03446 4.07135 4.19306 4.23571 4.27384 4.31162 4.32835 4.55980 4.61111 4.67505 4.76246 4.81900 4.83671 4.89733 5.01849 5.10836 5.14732 5.21724 5.28617 5.36865 5.43296 5.44485 5.49295 5.77858 6.06981 6.58268 6.70451 6.82666 7.15772 7.32452 7.40603 8.84592 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.004950 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.539062 B = 5655.073276 C = 6114.042117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.127 3.873 4 H 0.084 0.916 5 O -0.577 6.577 6 C -0.135 4.135 7 H 0.108 0.892 8 C -0.136 4.136 9 C 0.529 3.471 10 O -0.589 6.589 11 N -0.613 5.613 12 C 0.108 3.892 13 C -0.123 4.123 14 C 0.233 3.767 15 O -0.592 6.592 16 C -0.556 4.556 17 H 0.066 0.934 18 C 0.033 3.967 19 N -0.912 5.912 20 Si 0.960 3.040 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.124 3.876 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.384 0.616 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.378 0.622 39 H 0.269 0.731 40 H 0.068 0.932 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 -9.275 3.643 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.067 3.933 4 H 0.102 0.898 5 O -0.384 6.384 6 C -0.156 4.156 7 H 0.126 0.874 8 C -0.194 4.194 9 C 0.320 3.680 10 O -0.470 6.470 11 N -0.345 5.345 12 C -0.015 4.015 13 C -0.161 4.161 14 C 0.193 3.807 15 O -0.401 6.401 16 C -0.594 4.594 17 H 0.084 0.916 18 C -0.168 4.168 19 N -0.551 5.551 20 Si 0.786 3.214 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.192 1.192 24 C 0.002 3.998 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.233 0.767 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.262 -8.710 4.656 14.979 hybrid contribution 1.417 0.375 -1.532 2.120 sum -9.846 -8.335 3.123 13.273 Atomic orbital electron populations 1.21694 0.94966 1.02134 1.01736 1.22257 0.97145 0.94628 1.04535 1.21844 0.89655 0.94452 0.87310 0.89820 1.86622 1.76819 1.58452 1.16458 1.22144 0.98930 0.91347 1.03193 0.87362 1.21734 1.01652 1.02074 0.93914 1.20879 0.78753 0.92036 0.76364 1.90613 1.57872 1.51266 1.47242 1.48740 1.18763 1.08969 1.58072 1.22205 0.96086 0.84537 0.98643 1.23089 0.97134 1.00848 0.95073 1.19664 0.83815 0.90702 0.86509 1.86111 1.31782 1.73847 1.48355 1.21761 1.21389 1.10648 1.05612 0.91568 1.25653 0.95695 0.94700 1.00768 1.69783 1.26858 1.18042 1.40381 0.85522 0.77275 0.79010 0.79591 1.20337 1.21091 1.19221 1.22046 0.88801 0.91313 0.97611 0.93267 0.93172 0.91129 0.89984 0.88922 0.76741 0.92731 0.92184 0.87649 0.92074 0.92813 0.92573 0.90962 0.77222 0.92148 0.91339 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.81 71.98 0.71 -1.68 16 2 C -0.15 -2.37 5.40 30.59 0.17 -2.20 16 3 C 0.13 3.06 2.21 30.59 0.07 3.12 16 4 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 5 O -0.58 -15.84 12.50 -148.98 -1.86 -17.70 16 6 C -0.13 -3.49 2.12 -11.54 -0.02 -3.52 16 7 H 0.11 2.46 6.92 -2.39 -0.02 2.45 16 8 C -0.14 -2.91 8.64 71.98 0.62 -2.29 16 9 C 0.53 19.59 6.49 87.66 0.57 20.16 16 10 O -0.59 -26.05 16.56 -3.02 -0.05 -26.10 16 11 N -0.61 -23.96 3.33 -811.78 -2.70 -26.66 16 12 C 0.11 4.50 6.88 86.86 0.60 5.10 16 13 C -0.12 -5.49 5.47 31.99 0.18 -5.32 16 14 C 0.23 10.72 0.84 -10.35 -0.01 10.71 16 15 O -0.59 -28.87 13.06 -148.98 -1.95 -30.81 16 16 C -0.56 -27.30 8.23 25.60 0.21 -27.09 16 17 H 0.07 3.14 7.58 -2.91 -0.02 3.12 16 18 C 0.03 1.62 5.28 84.66 0.45 2.07 16 19 N -0.91 -46.08 10.67 21.45 0.23 -45.85 16 20 Si 0.96 39.51 29.54 68.60 2.03 41.54 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 C 0.12 4.83 5.57 86.74 0.48 5.31 16 25 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 0.91 7.82 -2.39 -0.02 0.89 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 1.19 6.32 -2.39 -0.02 1.18 16 30 H 0.38 7.73 9.05 -74.06 -0.67 7.06 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.50 6.67 -2.39 -0.02 1.49 16 34 H 0.06 2.52 8.09 -2.39 -0.02 2.50 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 2.59 8.04 -2.39 -0.02 2.57 16 37 H 0.07 3.43 7.53 -2.39 -0.02 3.41 16 38 H 0.38 18.86 7.46 -74.06 -0.55 18.31 16 39 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 40 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 41 H 0.09 3.05 7.16 -2.39 -0.02 3.04 16 Total: -1.00 -61.54 329.62 -0.48 -62.02 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.19 Total: 39.18 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.01 Total: 4.39 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -2.47 Total: -72.51 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -3.86 Total: -74.61 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -61.54 -0.48 -62.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911527130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.832 kcal (2) G-P(sol) polarization free energy of solvation -61.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds