Wall clock time and date at job start Mon Mar 30 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 H 1.08993 * 109.47080 * 55.00027 * 3 2 1 5 5 O 1.42899 * 109.46934 * 294.99671 * 3 2 1 6 6 C 1.52998 * 109.47201 * 174.99909 * 3 2 1 7 7 H 1.09000 * 109.47314 * 59.99456 * 6 3 2 8 8 C 1.53007 * 109.46994 * 300.00144 * 6 3 2 9 9 C 1.50696 * 109.47288 * 180.02562 * 6 3 2 10 10 O 1.21278 * 119.99797 * 359.97438 * 9 6 3 11 11 N 1.34777 * 120.00191 * 180.02562 * 9 6 3 12 12 C 1.47427 * 125.64707 * 0.02562 * 11 9 6 13 13 C 1.54909 * 104.83126 * 155.84134 * 12 11 9 14 14 C 1.55155 * 101.58319 * 37.00899 * 13 12 11 15 15 O 1.42903 * 110.71521 * 82.86218 * 14 13 12 16 16 C 1.50694 * 110.72177 * 205.95503 * 14 13 12 17 17 H 1.07994 * 119.99866 * 116.15664 * 16 14 13 18 18 C 1.37880 * 120.00331 * 296.15939 * 16 14 13 19 19 N 1.31512 * 119.99598 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00162 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46891 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46861 * 120.00075 * 20 18 16 23 23 H 1.48497 * 109.47070 * 240.00268 * 20 18 16 24 24 C 1.47018 * 125.65385 * 179.97438 * 11 9 6 25 25 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47196 * 300.00433 * 1 2 3 27 27 H 1.09010 * 109.46862 * 60.00144 * 1 2 3 28 28 H 1.09000 * 109.47196 * 239.99567 * 2 1 3 29 29 H 1.09003 * 109.47054 * 120.00208 * 2 1 3 30 30 H 0.96704 * 113.99987 * 299.99779 * 5 3 2 31 31 H 1.08997 * 109.47167 * 60.00103 * 8 6 3 32 32 H 1.09000 * 109.47074 * 180.02562 * 8 6 3 33 33 H 1.09000 * 109.46529 * 299.99794 * 8 6 3 34 34 H 1.09000 * 110.36621 * 37.00119 * 12 11 9 35 35 H 1.09001 * 110.37051 * 274.68116 * 12 11 9 36 36 H 1.09002 * 111.00456 * 278.93003 * 13 12 11 37 37 H 1.09007 * 111.03839 * 155.10257 * 13 12 11 38 38 H 0.96700 * 114.00311 * 61.45661 * 15 14 13 39 39 H 0.97002 * 119.99961 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88150 * 61.66679 * 24 11 9 41 41 H 1.09002 * 109.88190 * 300.51123 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5648 1.4443 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9695 0.7602 1.4332 9 6 4.0671 2.8651 0.1264 10 8 3.2828 3.7856 0.0348 11 7 5.3880 3.1129 0.2277 12 6 6.4470 2.0937 0.3432 13 6 7.7259 2.7889 -0.1867 14 6 7.5371 4.2347 0.3438 15 8 7.9707 4.3356 1.7017 16 6 8.2745 5.2216 -0.5240 17 1 7.7262 5.9711 -1.0753 18 6 9.6493 5.1677 -0.6144 19 7 10.3170 4.2546 0.0565 20 14 10.5633 6.3906 -1.6907 21 1 9.5891 7.3066 -2.3362 22 1 11.5053 7.1779 -0.8552 23 1 11.3221 5.6589 -2.7367 24 6 6.0117 4.4441 0.2403 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0143 1.6541 -2.0139 31 1 3.6062 -0.2674 1.4331 32 1 5.0558 0.7619 1.5230 33 1 3.5349 1.2994 2.2749 34 1 6.2058 1.2250 -0.2694 35 1 6.5787 1.7997 1.3845 36 1 7.7563 2.7732 -1.2761 37 1 8.6221 2.3324 0.2336 38 1 8.9080 4.1361 1.8312 39 1 11.2842 4.2169 -0.0067 40 1 5.6564 5.0118 1.1003 41 1 5.7719 4.9746 -0.6812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911527132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:00 Heat of formation + Delta-G solvation = -147.745117 kcal Electronic energy + Delta-G solvation = -22115.575688 eV Core-core repulsion = 18802.009248 eV Total energy + Delta-G solvation = -3313.566440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95122 -38.05809 -36.77140 -34.42964 -33.52672 -32.20529 -32.02981 -29.56669 -28.30486 -25.99847 -25.41883 -23.80327 -22.13882 -21.03721 -19.76224 -18.73778 -17.29201 -16.61433 -16.48452 -15.56236 -15.19591 -15.09970 -14.95172 -14.37358 -14.14370 -13.74311 -13.36853 -12.98999 -12.74877 -12.62851 -12.15865 -12.06402 -11.99046 -11.88810 -11.65332 -11.35450 -11.32647 -11.23041 -11.02047 -10.85499 -10.63586 -10.61904 -10.45910 -10.13770 -9.87618 -9.42717 -9.14583 -8.68139 -8.23239 -7.96140 -6.30983 -4.37616 3.13688 3.17862 3.26990 3.32020 3.52323 4.25759 4.41053 4.56528 4.68247 4.95435 4.96169 5.02931 5.16416 5.21020 5.38876 5.49284 5.56443 5.65651 5.69228 5.72913 5.77202 5.88927 5.89118 5.94667 6.07943 6.13011 6.20609 6.28681 6.46120 6.70855 6.89210 6.97751 7.26799 7.32161 7.71907 7.75363 8.01315 8.16386 8.64577 8.72604 9.29703 9.39827 10.76995 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038929 B = 0.004288 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.094364 B = 6528.717371 C = 6799.318804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.128 3.872 4 H 0.101 0.899 5 O -0.542 6.542 6 C -0.140 4.140 7 H 0.093 0.907 8 C -0.153 4.153 9 C 0.525 3.475 10 O -0.537 6.537 11 N -0.610 5.610 12 C 0.096 3.904 13 C -0.137 4.137 14 C 0.247 3.753 15 O -0.586 6.586 16 C -0.533 4.533 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.123 3.877 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.365 0.635 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.383 0.617 39 H 0.267 0.733 40 H 0.059 0.941 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -11.609 0.125 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.069 3.931 4 H 0.119 0.881 5 O -0.346 6.346 6 C -0.162 4.162 7 H 0.112 0.888 8 C -0.210 4.210 9 C 0.312 3.688 10 O -0.414 6.414 11 N -0.343 5.343 12 C -0.026 4.026 13 C -0.176 4.176 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.571 4.571 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.001 3.999 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.234 0.766 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.186 -10.617 0.615 15.434 hybrid contribution 1.697 -0.085 -1.022 1.983 sum -9.488 -10.702 -0.407 14.308 Atomic orbital electron populations 1.21689 0.95121 1.01148 1.02547 1.22348 0.97145 0.97324 1.02811 1.21720 0.90603 0.92110 0.88715 0.88100 1.86728 1.76029 1.56944 1.14878 1.22044 0.98253 0.94860 1.01006 0.88847 1.21952 1.03251 1.00233 0.95603 1.19983 0.80899 0.90747 0.77174 1.90704 1.54489 1.46217 1.49963 1.48639 1.05101 1.09336 1.71266 1.22538 0.89015 0.91007 1.00069 1.23332 0.94734 0.98832 1.00710 1.19456 0.87563 0.91291 0.80992 1.86125 1.31890 1.93297 1.28174 1.21575 0.91969 1.16114 1.27490 0.91713 1.24982 0.97455 0.95358 0.95227 1.69652 1.08149 1.33791 1.42120 0.86356 0.79580 0.80996 0.80039 1.19568 1.20746 1.20840 1.22035 0.93732 0.83037 1.01047 0.93021 0.92727 0.92053 0.91720 0.90652 0.78923 0.91416 0.90810 0.92028 0.92338 0.91852 0.91514 0.89545 0.76616 0.92259 0.92260 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.81 37.16 0.36 -0.95 16 2 C -0.16 -1.43 5.40 -26.73 -0.14 -1.57 16 3 C 0.13 1.60 2.09 -26.73 -0.06 1.54 16 4 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 5 O -0.54 -7.67 11.77 -53.48 -0.63 -8.30 16 6 C -0.14 -1.84 1.85 -91.77 -0.17 -2.01 16 7 H 0.09 1.08 7.84 -51.93 -0.41 0.67 16 8 C -0.15 -1.72 8.66 37.16 0.32 -1.40 16 9 C 0.52 9.78 7.07 -10.99 -0.08 9.71 16 10 O -0.54 -12.03 15.61 -12.69 -0.20 -12.23 16 11 N -0.61 -11.96 3.32 -170.53 -0.57 -12.53 16 12 C 0.10 1.68 5.13 -2.53 -0.01 1.67 16 13 C -0.14 -2.90 5.56 -24.58 -0.14 -3.03 16 14 C 0.25 5.93 0.85 -89.95 -0.08 5.85 16 15 O -0.59 -14.63 13.06 -35.23 -0.46 -15.09 16 16 C -0.53 -13.95 8.22 -34.44 -0.28 -14.23 16 17 H 0.06 1.72 7.56 -52.49 -0.40 1.32 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 19 N -0.90 -22.79 10.69 55.43 0.59 -22.20 16 20 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 C 0.12 2.81 6.22 -3.07 -0.02 2.79 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.59 7.82 -51.92 -0.41 0.18 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 30 H 0.37 3.79 9.05 45.56 0.41 4.20 16 31 H 0.07 0.58 6.32 -51.93 -0.33 0.25 16 32 H 0.07 0.87 5.00 -51.93 -0.26 0.61 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.85 7.36 -51.93 -0.38 0.47 16 35 H 0.06 1.07 7.07 -51.93 -0.37 0.70 16 36 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 37 H 0.09 1.88 7.64 -51.92 -0.40 1.49 16 38 H 0.38 9.55 7.28 45.56 0.33 9.89 16 39 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 40 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 41 H 0.07 1.65 7.66 -51.93 -0.40 1.26 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -29.88 323.30 -6.80 -36.68 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.00 Total: 13.48 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.38 Total: 0.13 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.03 Total: -34.73 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.29 Total: -35.62 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.88 -6.80 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911527132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.064 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds