Wall clock time and date at job start Mon Mar 30 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 H 1.08993 * 109.47080 * 55.00027 * 3 2 1 5 5 O 1.42899 * 109.46934 * 294.99671 * 3 2 1 6 6 C 1.52998 * 109.47201 * 174.99909 * 3 2 1 7 7 H 1.09000 * 109.47314 * 59.99456 * 6 3 2 8 8 C 1.53007 * 109.46994 * 300.00144 * 6 3 2 9 9 C 1.50696 * 109.47288 * 180.02562 * 6 3 2 10 10 O 1.21278 * 119.99797 * 359.97438 * 9 6 3 11 11 N 1.34777 * 120.00191 * 180.02562 * 9 6 3 12 12 C 1.47427 * 125.64707 * 0.02562 * 11 9 6 13 13 C 1.54909 * 104.83126 * 155.84134 * 12 11 9 14 14 C 1.55155 * 101.58319 * 37.00899 * 13 12 11 15 15 O 1.42903 * 110.71521 * 82.86218 * 14 13 12 16 16 C 1.50694 * 110.72177 * 205.95503 * 14 13 12 17 17 H 1.07994 * 119.99866 * 116.15664 * 16 14 13 18 18 C 1.37880 * 120.00331 * 296.15939 * 16 14 13 19 19 N 1.31512 * 119.99598 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00162 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46891 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46861 * 120.00075 * 20 18 16 23 23 H 1.48497 * 109.47070 * 240.00268 * 20 18 16 24 24 C 1.47018 * 125.65385 * 179.97438 * 11 9 6 25 25 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47196 * 300.00433 * 1 2 3 27 27 H 1.09010 * 109.46862 * 60.00144 * 1 2 3 28 28 H 1.09000 * 109.47196 * 239.99567 * 2 1 3 29 29 H 1.09003 * 109.47054 * 120.00208 * 2 1 3 30 30 H 0.96704 * 113.99987 * 299.99779 * 5 3 2 31 31 H 1.08997 * 109.47167 * 60.00103 * 8 6 3 32 32 H 1.09000 * 109.47074 * 180.02562 * 8 6 3 33 33 H 1.09000 * 109.46529 * 299.99794 * 8 6 3 34 34 H 1.09000 * 110.36621 * 37.00119 * 12 11 9 35 35 H 1.09001 * 110.37051 * 274.68116 * 12 11 9 36 36 H 1.09002 * 111.00456 * 278.93003 * 13 12 11 37 37 H 1.09007 * 111.03839 * 155.10257 * 13 12 11 38 38 H 0.96700 * 114.00311 * 61.45661 * 15 14 13 39 39 H 0.97002 * 119.99961 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88150 * 61.66679 * 24 11 9 41 41 H 1.09002 * 109.88190 * 300.51123 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5648 1.4443 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9695 0.7602 1.4332 9 6 4.0671 2.8651 0.1264 10 8 3.2828 3.7856 0.0348 11 7 5.3880 3.1129 0.2277 12 6 6.4470 2.0937 0.3432 13 6 7.7259 2.7889 -0.1867 14 6 7.5371 4.2347 0.3438 15 8 7.9707 4.3356 1.7017 16 6 8.2745 5.2216 -0.5240 17 1 7.7262 5.9711 -1.0753 18 6 9.6493 5.1677 -0.6144 19 7 10.3170 4.2546 0.0565 20 14 10.5633 6.3906 -1.6907 21 1 9.5891 7.3066 -2.3362 22 1 11.5053 7.1779 -0.8552 23 1 11.3221 5.6589 -2.7367 24 6 6.0117 4.4441 0.2403 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0143 1.6541 -2.0139 31 1 3.6062 -0.2674 1.4331 32 1 5.0558 0.7619 1.5230 33 1 3.5349 1.2994 2.2749 34 1 6.2058 1.2250 -0.2694 35 1 6.5787 1.7997 1.3845 36 1 7.7563 2.7732 -1.2761 37 1 8.6221 2.3324 0.2336 38 1 8.9080 4.1361 1.8312 39 1 11.2842 4.2169 -0.0067 40 1 5.6564 5.0118 1.1003 41 1 5.7719 4.9746 -0.6812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911527132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:00 Heat of formation + Delta-G solvation = -170.248443 kcal Electronic energy + Delta-G solvation = -22116.551505 eV Core-core repulsion = 18802.009248 eV Total energy + Delta-G solvation = -3314.542258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37924 -39.47770 -38.20102 -36.16013 -34.61089 -34.19526 -32.93542 -31.22147 -30.01305 -27.21052 -26.89147 -25.08744 -23.47840 -22.07053 -21.49658 -20.21799 -19.17929 -18.03712 -17.57763 -16.96372 -16.84226 -16.64901 -16.20627 -15.88915 -15.38732 -15.11102 -14.76206 -14.55399 -13.96986 -13.87454 -13.62220 -13.43273 -13.24262 -13.14471 -13.02467 -12.83639 -12.78152 -12.51309 -12.40125 -12.37959 -12.25224 -11.99043 -11.69619 -11.55642 -11.28065 -10.93026 -10.68850 -10.50781 -10.14444 -9.59029 -8.26596 -6.40205 1.38965 1.43506 1.53461 1.68631 2.04690 2.39080 2.98915 3.39319 3.58440 3.65535 3.85474 3.98912 4.08096 4.15641 4.25882 4.30126 4.33455 4.42420 4.56767 4.61412 4.66892 4.77306 4.84499 4.89353 4.91921 5.04787 5.12782 5.16644 5.25533 5.29467 5.39840 5.45381 5.45822 5.51786 5.75301 6.07457 6.60118 6.68373 6.93381 7.22074 7.30401 7.41658 8.79931 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038929 B = 0.004288 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.094364 B = 6528.717371 C = 6799.318804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.128 3.872 4 H 0.074 0.926 5 O -0.570 6.570 6 C -0.128 4.128 7 H 0.123 0.877 8 C -0.150 4.150 9 C 0.517 3.483 10 O -0.583 6.583 11 N -0.613 5.613 12 C 0.106 3.894 13 C -0.128 4.128 14 C 0.236 3.764 15 O -0.593 6.593 16 C -0.564 4.564 17 H 0.047 0.953 18 C 0.039 3.961 19 N -0.904 5.904 20 Si 0.959 3.041 21 H -0.278 1.278 22 H -0.278 1.278 23 H -0.273 1.273 24 C 0.129 3.871 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.380 0.620 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.381 0.619 39 H 0.272 0.728 40 H 0.037 0.963 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -14.356 -0.263 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.068 3.932 4 H 0.092 0.908 5 O -0.376 6.376 6 C -0.149 4.149 7 H 0.140 0.860 8 C -0.207 4.207 9 C 0.307 3.693 10 O -0.463 6.463 11 N -0.346 5.346 12 C -0.015 4.015 13 C -0.167 4.167 14 C 0.196 3.804 15 O -0.403 6.403 16 C -0.603 4.603 17 H 0.066 0.934 18 C -0.162 4.162 19 N -0.543 5.543 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.204 1.204 23 H -0.198 1.198 24 C 0.005 3.995 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.228 0.772 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.052 -13.403 0.229 17.374 hybrid contribution 1.640 0.834 -0.891 2.044 sum -9.412 -12.569 -0.662 15.717 Atomic orbital electron populations 1.21699 0.95287 1.02056 1.01597 1.22270 0.96915 0.94648 1.04611 1.21741 0.89997 0.94006 0.87408 0.90816 1.86690 1.76526 1.58269 1.16105 1.22109 0.98609 0.90865 1.03323 0.85959 1.21988 1.03096 1.01911 0.93742 1.21148 0.79858 0.92903 0.75389 1.90680 1.55455 1.48364 1.51771 1.48738 1.06099 1.08260 1.71499 1.22596 0.86355 0.91102 1.01457 1.23114 0.96499 0.97100 0.99976 1.19574 0.87677 0.92894 0.80269 1.86110 1.31678 1.93529 1.28946 1.21759 0.92880 1.16986 1.28637 0.93426 1.25556 0.97786 0.96739 0.96163 1.69692 1.08514 1.34056 1.42087 0.85504 0.78236 0.79085 0.78746 1.20327 1.20355 1.19814 1.21726 0.93637 0.84965 0.99125 0.91107 0.93548 0.93270 0.89693 0.88869 0.77189 0.87628 0.91006 0.93213 0.88013 0.90678 0.92427 0.90185 0.76873 0.91794 0.94504 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.81 71.98 0.71 -1.59 16 2 C -0.15 -2.12 5.40 30.59 0.17 -1.95 16 3 C 0.13 2.97 2.09 30.59 0.06 3.03 16 4 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 5 O -0.57 -15.61 11.77 -131.53 -1.55 -17.16 16 6 C -0.13 -3.01 1.85 -11.54 -0.02 -3.03 16 7 H 0.12 2.24 7.84 -2.39 -0.02 2.22 16 8 C -0.15 -2.82 8.66 71.98 0.62 -2.20 16 9 C 0.52 18.98 7.07 87.66 0.62 19.60 16 10 O -0.58 -26.79 15.61 14.43 0.23 -26.56 16 11 N -0.61 -23.75 3.32 -811.82 -2.70 -26.44 16 12 C 0.11 3.48 5.13 86.85 0.45 3.92 16 13 C -0.13 -5.31 5.56 31.99 0.18 -5.13 16 14 C 0.24 11.51 0.85 -10.36 -0.01 11.51 16 15 O -0.59 -30.13 13.06 -148.98 -1.95 -32.07 16 16 C -0.56 -30.24 8.22 25.60 0.21 -30.03 16 17 H 0.05 2.63 7.56 -2.91 -0.02 2.61 16 18 C 0.04 2.00 5.29 84.66 0.45 2.45 16 19 N -0.90 -45.55 10.69 21.45 0.23 -45.32 16 20 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.13 6.09 6.22 86.73 0.54 6.63 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.87 7.82 -2.38 -0.02 0.85 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.04 6.17 -2.39 -0.01 1.03 16 30 H 0.38 7.25 9.05 -74.05 -0.67 6.58 16 31 H 0.11 1.23 6.32 -2.39 -0.02 1.21 16 32 H 0.07 1.40 5.00 -2.39 -0.01 1.39 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 2.49 7.36 -2.39 -0.02 2.48 16 35 H 0.08 2.33 7.07 -2.39 -0.02 2.31 16 36 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 37 H 0.08 3.41 7.64 -2.38 -0.02 3.39 16 38 H 0.38 19.22 7.28 -74.06 -0.54 18.68 16 39 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 40 H 0.04 1.85 8.07 -2.39 -0.02 1.84 16 41 H 0.05 2.62 7.66 -2.39 -0.02 2.60 16 Total: -1.00 -66.84 323.30 0.09 -66.75 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.17 Total: 34.16 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 3.97 Total: 3.19 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -2.47 Total: -71.77 kcal Atomic # 8 Polarization: -72.52 SS G_CDS: -3.27 Total: -75.79 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -66.84 0.09 -66.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911527132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.497 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds