Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46782 * 2 1 4 4 H 1.09000 * 109.47497 * 54.99922 * 3 2 1 5 5 O 1.42906 * 109.46948 * 295.00119 * 3 2 1 6 6 C 1.52998 * 109.46883 * 175.00622 * 3 2 1 7 7 H 1.09000 * 109.47021 * 304.99278 * 6 3 2 8 8 C 1.52998 * 109.47495 * 64.99737 * 6 3 2 9 9 C 1.50702 * 109.46997 * 185.00111 * 6 3 2 10 10 O 1.21282 * 119.99806 * 273.26664 * 9 6 3 11 11 N 1.34773 * 120.00285 * 93.26965 * 9 6 3 12 12 C 1.47432 * 125.64814 * 354.72631 * 11 9 6 13 13 C 1.54905 * 104.82855 * 155.90989 * 12 11 9 14 14 C 1.55145 * 101.58896 * 37.00883 * 13 12 11 15 15 O 1.42898 * 110.72410 * 82.85991 * 14 13 12 16 16 C 1.50700 * 110.72233 * 205.95907 * 14 13 12 17 17 H 1.08003 * 120.00197 * 116.15581 * 16 14 13 18 18 C 1.37880 * 120.00045 * 296.15527 * 16 14 13 19 19 N 1.31513 * 119.99876 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00151 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47385 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47228 * 119.99813 * 20 18 16 23 23 H 1.48500 * 109.47233 * 239.99688 * 20 18 16 24 24 C 1.47027 * 125.64960 * 174.76445 * 11 9 6 25 25 H 1.09003 * 109.47094 * 299.99561 * 1 2 3 26 26 H 1.08999 * 109.47439 * 59.99986 * 1 2 3 27 27 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47094 * 240.00439 * 2 1 3 29 29 H 1.08999 * 109.47439 * 120.00014 * 2 1 3 30 30 H 0.96697 * 113.99981 * 299.99652 * 5 3 2 31 31 H 1.08999 * 109.47127 * 64.40269 * 8 6 3 32 32 H 1.09001 * 109.46925 * 184.40236 * 8 6 3 33 33 H 1.09001 * 109.46841 * 304.40083 * 8 6 3 34 34 H 1.08991 * 110.36441 * 37.06481 * 12 11 9 35 35 H 1.09005 * 110.36053 * 274.74472 * 12 11 9 36 36 H 1.09007 * 111.00082 * 278.92935 * 13 12 11 37 37 H 1.09006 * 111.03293 * 155.10246 * 13 12 11 38 38 H 0.96700 * 113.99808 * 61.45555 * 15 14 13 39 39 H 0.96997 * 120.00432 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.87818 * 61.60647 * 24 11 9 41 41 H 1.08996 * 109.88279 * 300.44437 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6618 2.0814 -1.2211 6 6 3.5648 1.4444 0.1256 7 1 3.8571 0.8802 1.0112 8 6 4.1797 0.7977 -1.1172 9 6 4.0569 2.8634 0.2491 10 8 4.2844 3.5153 -0.7480 11 7 4.2442 3.4081 1.4676 12 6 3.9056 2.7726 2.7541 13 6 4.8319 3.4567 3.7902 14 6 4.8614 4.9166 3.2659 15 8 3.7161 5.6403 3.7206 16 6 6.1306 5.6099 3.6896 17 1 6.8394 5.9412 2.9451 18 6 6.3869 5.8213 5.0278 19 7 5.5235 5.4184 5.9344 20 14 7.9597 6.6813 5.5530 21 1 8.7570 7.0329 4.3505 22 1 7.6213 7.9181 6.3021 23 1 8.7516 5.7761 6.4241 24 6 4.8195 4.7347 1.7340 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0140 1.6543 -2.0139 31 1 3.9526 1.4054 -1.9931 32 1 5.2604 0.7281 -0.9935 33 1 3.7641 -0.2012 -1.2503 34 1 4.1072 1.7023 2.7132 35 1 2.8597 2.9533 3.0027 36 1 5.8287 3.0157 3.7743 37 1 4.4020 3.4094 4.7907 38 1 3.6548 5.7154 4.6827 39 1 5.7039 5.5668 6.8758 40 1 4.1939 5.5067 1.2859 41 1 5.8288 4.7897 1.3263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911527133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = -150.498807 kcal Electronic energy + Delta-G solvation = -22195.354298 eV Core-core repulsion = 18881.668449 eV Total energy + Delta-G solvation = -3313.685849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98013 -38.13743 -36.92244 -34.31466 -33.18850 -32.20206 -32.02364 -29.66828 -28.37471 -26.53572 -25.40287 -23.61873 -22.17445 -20.93508 -19.64416 -18.57474 -17.33450 -16.87253 -16.45617 -15.79584 -15.39850 -15.02794 -14.89980 -14.41761 -14.25567 -13.73766 -13.35216 -13.01765 -12.59923 -12.47768 -12.25950 -12.01101 -11.98384 -11.85688 -11.67723 -11.44626 -11.36104 -11.20978 -11.03975 -10.91495 -10.73853 -10.64444 -10.46270 -10.13348 -10.00946 -9.43143 -9.16825 -8.67982 -8.22905 -7.97399 -6.30810 -4.37642 3.07538 3.17767 3.26942 3.31681 3.53087 4.25660 4.35617 4.56383 4.71892 4.87303 4.95754 5.01570 5.05166 5.23133 5.35594 5.50113 5.56339 5.63528 5.68828 5.73416 5.77455 5.88351 5.92726 5.97205 6.02731 6.11233 6.19581 6.24074 6.47424 6.69857 6.88968 6.97492 7.26918 7.32263 7.65143 7.71943 8.01237 8.15195 8.64123 8.69987 9.30041 9.40793 10.77251 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.004550 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.963606 B = 6151.791139 C = 6453.624942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.119 3.881 4 H 0.101 0.899 5 O -0.549 6.549 6 C -0.143 4.143 7 H 0.096 0.904 8 C -0.142 4.142 9 C 0.531 3.469 10 O -0.546 6.546 11 N -0.610 5.610 12 C 0.095 3.905 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.123 3.877 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.371 0.629 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.383 0.617 39 H 0.268 0.732 40 H 0.060 0.940 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -12.635 -6.700 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.060 3.940 4 H 0.118 0.882 5 O -0.354 6.354 6 C -0.165 4.165 7 H 0.114 0.886 8 C -0.199 4.199 9 C 0.318 3.682 10 O -0.424 6.424 11 N -0.343 5.343 12 C -0.028 4.028 13 C -0.175 4.175 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.001 3.999 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.219 0.781 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.234 0.766 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.084 -11.867 -7.343 15.224 hybrid contribution 1.325 -0.089 0.895 1.601 sum -4.759 -11.955 -6.448 14.393 Atomic orbital electron populations 1.21705 0.94995 1.01315 1.02613 1.22276 0.97179 0.96857 1.02906 1.21811 0.90617 0.93078 0.88539 0.88158 1.86638 1.76191 1.57325 1.15278 1.22036 0.98002 0.94865 1.01573 0.88605 1.21706 1.01301 0.99805 0.97118 1.19917 0.78031 0.88190 0.82024 1.90640 1.52370 1.63259 1.36143 1.48660 1.61148 1.19078 1.05382 1.22511 0.99883 0.96289 0.84130 1.23315 0.97967 0.98514 0.97725 1.19458 0.85265 0.87726 0.86858 1.86134 1.47012 1.77740 1.28550 1.21574 1.04291 1.38821 0.92506 0.91717 1.24978 0.97173 0.94503 0.96328 1.69650 1.35915 1.46702 1.01443 0.86359 0.82661 0.79287 0.78671 1.19580 1.20724 1.20837 1.22050 0.97534 0.82641 0.97682 0.92597 0.92044 0.92889 0.91300 0.90884 0.78082 0.91059 0.91963 0.91808 0.92238 0.91987 0.91464 0.89494 0.76615 0.92235 0.92127 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 37.16 0.36 -0.96 16 2 C -0.15 -1.38 5.25 -26.73 -0.14 -1.52 16 3 C 0.12 1.47 2.70 -26.73 -0.07 1.39 16 4 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 5 O -0.55 -7.57 12.52 -35.23 -0.44 -8.01 16 6 C -0.14 -1.90 2.16 -91.77 -0.20 -2.10 16 7 H 0.10 1.14 6.45 -51.93 -0.33 0.80 16 8 C -0.14 -1.59 8.21 37.16 0.30 -1.29 16 9 C 0.53 9.99 6.63 -10.99 -0.07 9.92 16 10 O -0.55 -12.09 16.47 5.56 0.09 -12.00 16 11 N -0.61 -12.18 3.33 -170.51 -0.57 -12.75 16 12 C 0.09 1.69 6.72 -2.53 -0.02 1.67 16 13 C -0.14 -2.90 5.56 -24.59 -0.14 -3.03 16 14 C 0.25 5.98 0.85 -89.94 -0.08 5.91 16 15 O -0.59 -14.83 13.06 -35.23 -0.46 -15.29 16 16 C -0.53 -13.99 8.22 -34.44 -0.28 -14.27 16 17 H 0.06 1.71 7.56 -52.48 -0.40 1.32 16 18 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.89 10.69 55.43 0.59 -22.30 16 20 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.12 2.83 6.23 -3.06 -0.02 2.81 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.53 6.72 -51.93 -0.35 0.18 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.37 3.95 7.30 45.56 0.33 4.28 16 31 H 0.07 0.86 6.52 -51.93 -0.34 0.52 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.53 6.48 -51.93 -0.34 0.19 16 34 H 0.06 0.87 6.64 -51.93 -0.34 0.52 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 37 H 0.09 1.91 7.64 -51.93 -0.40 1.51 16 38 H 0.38 9.66 7.28 45.56 0.33 10.00 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 41 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -29.78 325.87 -6.48 -36.26 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.14 Total: 13.71 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.44 Total: 0.28 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.03 Total: -35.04 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.81 Total: -35.30 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.78 -6.48 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911527133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.239 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds