Wall clock time and date at job start Mon Mar 30 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53006 * 109.46974 * 119.99942 * 2 1 3 5 5 C 1.50698 * 109.47184 * 299.99768 * 4 2 1 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 14 14 N 1.46496 * 109.47294 * 59.99994 * 13 2 1 15 15 C 1.34772 * 120.00630 * 179.97438 * 14 13 2 16 16 O 1.21518 * 119.99474 * 0.02562 * 15 14 13 17 17 O 1.34634 * 120.00861 * 179.97438 * 15 14 13 18 18 C 1.45199 * 117.00458 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.45542 * 330.70030 * 18 17 15 20 20 C 1.54506 * 110.50899 * 208.09449 * 18 17 15 21 21 C 1.54480 * 104.06397 * 241.35482 * 20 18 17 22 22 O 1.44420 * 104.80172 * 23.98164 * 21 20 18 23 23 C 1.44788 * 105.29520 * 319.45161 * 22 21 20 24 24 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 25 25 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 26 26 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 30 30 H 1.09001 * 109.47002 * 180.02562 * 4 2 1 31 31 H 1.08993 * 109.46955 * 59.99927 * 4 2 1 32 32 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 33 33 H 1.09001 * 109.46832 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47261 * 299.99863 * 13 2 1 35 35 H 0.97006 * 119.99755 * 359.97438 * 14 13 2 36 36 H 1.08998 * 110.51418 * 359.97438 * 20 18 17 37 37 H 1.09007 * 110.51211 * 122.57034 * 20 18 17 38 38 H 1.08993 * 110.37155 * 142.81495 * 21 20 18 39 39 H 1.09004 * 110.36889 * 265.03877 * 21 20 18 40 40 H 1.08994 * 110.42633 * 281.77687 * 23 22 21 41 41 H 1.09004 * 110.48360 * 159.32896 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6264 -1.5515 3.8527 9 14 1.2471 0.3980 5.2572 10 1 1.7422 -0.3019 6.4698 11 1 -0.2379 0.3980 5.2567 12 1 1.7420 1.7982 5.2577 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8777 -0.4908 -3.6695 16 8 2.5763 -1.4788 -3.7809 17 8 1.4285 0.1435 -4.7688 18 6 1.8187 -0.4083 -6.0540 19 1 2.7844 -0.9077 -5.9768 20 6 1.8676 0.7020 -7.1274 21 6 0.8134 0.2644 -8.1683 22 8 -0.0965 -0.5858 -7.4370 23 6 0.7424 -1.3881 -6.5716 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 2.9497 -2.0088 3.0607 33 1 3.1300 -0.7208 -1.2494 34 1 1.6767 -1.7490 -1.2492 35 1 0.9937 0.7578 -2.3564 36 1 1.5984 1.6649 -6.6934 37 1 2.8576 0.7515 -7.5809 38 1 0.2866 1.1331 -8.5631 39 1 1.2872 -0.2913 -8.9776 40 1 1.2060 -2.1978 -7.1352 41 1 0.1614 -1.7874 -5.7403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915674664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:33 Heat of formation + Delta-G solvation = -168.884803 kcal Electronic energy + Delta-G solvation = -21244.901616 eV Core-core repulsion = 17930.418490 eV Total energy + Delta-G solvation = -3314.483126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85439 -40.23519 -39.09637 -37.27166 -35.60055 -34.08464 -32.53350 -29.93836 -28.67519 -28.06749 -27.84755 -25.16723 -24.18662 -22.83187 -21.88790 -20.66869 -19.62374 -18.49326 -18.21867 -17.77455 -17.04364 -16.80491 -16.24975 -16.12128 -15.70289 -15.61330 -15.41633 -14.49185 -14.36702 -14.32244 -13.87363 -13.68415 -13.36311 -13.24609 -13.05949 -12.81728 -12.63894 -12.55925 -12.36973 -11.99838 -11.95404 -11.90213 -11.87622 -11.76175 -11.66170 -11.24349 -10.80319 -10.51876 -10.47718 -10.32484 -8.58179 -6.27409 1.01137 1.56031 1.61404 1.63859 1.81583 2.61660 2.86561 3.07014 3.24807 3.38477 3.64084 3.79080 3.93841 3.94476 4.07761 4.13773 4.28997 4.29473 4.54122 4.57689 4.58058 4.62210 4.76445 4.82622 4.86532 4.88831 4.95187 5.01389 5.14322 5.25592 5.30782 5.33651 5.35439 5.47786 5.62409 5.71690 6.09124 6.28328 6.31049 6.66751 7.18192 7.52739 8.82118 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.050281 B = 0.003160 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.737078 B = 8858.231844 C = 8985.093072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.123 4.123 4 C 0.025 3.975 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.045 4.045 8 N -0.947 5.947 9 Si 1.113 2.887 10 H -0.292 1.292 11 H -0.269 1.269 12 H -0.268 1.268 13 C 0.157 3.843 14 N -0.687 5.687 15 C 0.643 3.357 16 O -0.607 6.607 17 O -0.358 6.358 18 C 0.062 3.938 19 H 0.101 0.899 20 C -0.146 4.146 21 C 0.041 3.959 22 O -0.395 6.395 23 C 0.032 3.968 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.056 0.944 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.254 0.746 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 7.203 -22.854 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.013 4.013 5 C -0.628 4.628 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.586 5.586 9 Si 0.935 3.065 10 H -0.218 1.218 11 H -0.194 1.194 12 H -0.194 1.194 13 C 0.034 3.966 14 N -0.348 5.348 15 C 0.396 3.604 16 O -0.498 6.498 17 O -0.272 6.272 18 C 0.006 3.994 19 H 0.119 0.881 20 C -0.183 4.183 21 C -0.035 4.035 22 O -0.314 6.314 23 C -0.045 4.045 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.004 0.996 31 H 0.003 0.997 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.391 6.703 -21.374 22.655 hybrid contribution 0.371 -0.355 -1.245 1.347 sum -3.020 6.348 -22.619 23.686 Atomic orbital electron populations 1.21712 0.93486 1.01125 1.01733 1.20623 0.96818 0.96389 0.92082 1.21708 1.00058 0.94490 1.01753 1.19134 0.94176 0.94410 0.93548 1.22356 1.33791 1.14274 0.92348 0.91717 1.27283 0.95019 0.96544 1.05257 1.70913 1.34854 1.20028 1.32765 0.82980 0.76499 0.75048 0.71981 1.21772 1.19412 1.19361 1.21331 0.98244 0.95278 0.81697 1.44706 1.54894 1.33308 1.01850 1.18279 0.78551 0.81246 0.82315 1.90963 1.43265 1.28732 1.86864 1.86372 1.71003 1.55361 1.14414 1.24398 0.99623 0.96369 0.79016 0.88134 1.23188 1.02648 0.98602 0.93906 1.23704 0.90566 0.95193 0.94047 1.89213 1.31206 1.54431 1.56554 1.23927 0.92216 0.93846 0.94483 0.92438 0.91304 0.94227 0.94127 0.91246 0.92460 0.99585 0.99658 0.93706 0.92536 0.92665 0.74451 0.88851 0.86306 0.86947 0.89722 0.88460 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 2 C -0.06 -2.17 0.54 -52.18 -0.03 -2.20 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.02 1.23 3.35 29.85 0.10 1.33 16 5 C -0.59 -31.41 7.65 25.60 0.20 -31.21 16 6 H 0.06 3.26 5.68 -2.91 -0.02 3.24 16 7 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 8 N -0.95 -58.58 13.65 21.45 0.29 -58.29 16 9 Si 1.11 49.28 29.90 68.60 2.05 51.33 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 13 C 0.16 5.43 4.56 86.38 0.39 5.82 16 14 N -0.69 -19.72 4.96 -590.86 -2.93 -22.65 16 15 C 0.64 19.68 8.75 129.79 1.14 20.81 16 16 O -0.61 -22.24 15.62 19.79 0.31 -21.93 16 17 O -0.36 -9.14 9.93 -55.44 -0.55 -9.69 16 18 C 0.06 1.25 3.44 31.61 0.11 1.36 16 19 H 0.10 2.12 7.20 -2.39 -0.02 2.10 16 20 C -0.15 -1.86 6.90 31.61 0.22 -1.65 16 21 C 0.04 0.50 7.63 72.49 0.55 1.05 16 22 O -0.39 -8.15 11.66 -148.98 -1.74 -9.89 16 23 C 0.03 0.64 7.41 72.48 0.54 1.18 16 24 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 25 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 26 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 29 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 30 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 31 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 32 H 0.25 15.94 7.22 -92.71 -0.67 15.28 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.42 9.95 6.27 -92.70 -0.58 9.37 16 36 H 0.09 1.24 8.00 -2.39 -0.02 1.22 16 37 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.91 8.09 -2.38 -0.02 1.89 16 Total: -1.00 -69.55 329.42 2.81 -66.75 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.54 Total: 17.02 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.84 Total: -12.65 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.64 Total: -80.94 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.98 Total: -41.50 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Total: -69.55 2.81 -66.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915674664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.139 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds