Wall clock time and date at job start Mon Mar 30 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34231 * 117.00643 * 2 1 4 4 O 1.20824 * 119.99267 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00172 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.50504 * 300.00189 * 5 3 2 7 7 C 1.53119 * 109.50170 * 60.08300 * 5 3 2 8 8 C 1.53123 * 109.15992 * 177.63061 * 7 5 3 9 9 C 1.53039 * 109.27592 * 302.34881 * 8 7 5 10 10 N 1.46837 * 109.52730 * 59.18076 * 9 8 7 11 11 C 1.46903 * 111.00246 * 174.15810 * 10 9 8 12 12 C 1.52995 * 109.46917 * 293.95134 * 11 10 9 13 13 H 1.08997 * 109.47291 * 60.00214 * 12 11 10 14 14 O 1.42897 * 109.47498 * 299.99564 * 12 11 10 15 15 C 1.50703 * 109.46940 * 179.97438 * 12 11 10 16 16 H 1.07997 * 119.99988 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00152 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00008 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00355 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47436 * 89.99410 * 19 17 15 21 21 H 1.48502 * 109.47387 * 209.99868 * 19 17 15 22 22 H 1.48510 * 109.46837 * 329.99699 * 19 17 15 23 23 C 1.46853 * 111.19539 * 298.25328 * 10 9 8 24 24 H 1.09001 * 109.47031 * 59.99581 * 1 2 3 25 25 H 1.08997 * 109.47532 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47386 * 300.00031 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46832 * 60.08089 * 6 5 3 29 29 H 1.09004 * 109.47261 * 300.08070 * 6 5 3 30 30 H 1.08996 * 109.52396 * 297.53738 * 7 5 3 31 31 H 1.09004 * 109.52076 * 57.66695 * 7 5 3 32 32 H 1.09005 * 109.50166 * 62.28463 * 8 7 5 33 33 H 1.08997 * 109.50186 * 182.36737 * 8 7 5 34 34 H 1.09004 * 109.45712 * 179.19555 * 9 8 7 35 35 H 1.09005 * 109.46267 * 299.16772 * 9 8 7 36 36 H 1.09002 * 109.47069 * 53.95278 * 11 10 9 37 37 H 1.09001 * 109.47394 * 173.94957 * 11 10 9 38 38 H 0.96698 * 113.99912 * 300.00539 * 14 12 11 39 39 H 0.97000 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.46446 * 301.72750 * 23 10 9 41 41 H 1.09009 * 109.46272 * 181.75836 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1137 0.5815 1.2499 7 6 4.1150 0.5823 -1.2501 8 6 5.6400 0.7183 -1.2718 9 6 6.0154 2.2015 -1.2373 10 7 5.4683 2.8182 -0.0222 11 6 5.9250 4.2078 0.1144 12 6 7.4372 4.2272 0.3456 13 1 7.9403 3.7611 -0.5016 14 8 7.7460 3.5050 1.5393 15 6 7.9058 5.6528 0.4851 16 1 7.1960 6.4637 0.4153 17 6 9.2407 5.9217 0.7006 18 7 10.1052 4.9342 0.7851 19 14 9.8214 7.6886 0.8743 20 1 9.7654 8.0901 2.3028 21 1 11.2183 7.8013 0.3828 22 1 8.9422 8.5794 0.0750 23 6 4.0020 2.7418 -0.0020 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 5.2022 0.6392 1.2500 28 1 3.8060 -0.4642 1.2493 29 1 3.7228 1.0748 2.1399 30 1 3.8436 -0.4732 -1.2307 31 1 3.6939 1.0504 -2.1399 32 1 6.0626 0.2157 -0.4017 33 1 6.0329 0.2638 -2.1812 34 1 7.1008 2.3014 -1.2383 35 1 5.6040 2.7008 -2.1147 36 1 5.6895 4.7588 -0.7962 37 1 5.4219 4.6740 0.9615 38 1 7.3310 3.8648 2.3351 39 1 11.0444 5.1234 0.9364 40 1 3.6002 3.2384 -0.8851 41 1 3.6249 3.2342 0.8945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930739286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:28 Heat of formation + Delta-G solvation = -161.500479 kcal Electronic energy + Delta-G solvation = -22098.597830 eV Core-core repulsion = 18784.434913 eV Total energy + Delta-G solvation = -3314.162918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01822 -40.06782 -37.77927 -37.42543 -35.00788 -34.17357 -32.73411 -30.20716 -28.69439 -27.90969 -26.95913 -25.02696 -24.24899 -22.73374 -21.53598 -19.87716 -19.07231 -18.34992 -17.86928 -17.37463 -16.65885 -16.38980 -16.21141 -16.11938 -15.41533 -15.32774 -15.00922 -14.68041 -14.45646 -14.16740 -13.94227 -13.56045 -13.36547 -13.17702 -12.89669 -12.84664 -12.77487 -12.66424 -12.43298 -12.15261 -12.05111 -11.95955 -11.80967 -11.63624 -11.32854 -11.18489 -10.89436 -10.66354 -10.06602 -9.13914 -8.11717 -6.37171 1.08979 1.41197 1.41524 1.52121 1.63832 2.39568 3.03979 3.14704 3.43063 3.64609 3.80407 4.05820 4.12655 4.18790 4.31453 4.32621 4.33862 4.41001 4.51003 4.58029 4.62551 4.69587 4.73339 4.77299 4.91199 4.98357 5.00115 5.04019 5.07390 5.18389 5.26234 5.35320 5.55182 5.62824 5.77935 6.01073 6.19591 6.25581 6.66321 6.75631 7.36856 7.65403 8.92442 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.004131 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.259789 B = 6775.722219 C = 7059.315957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.478 3.522 4 O -0.540 6.540 5 C -0.043 4.043 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.106 4.106 9 C 0.048 3.952 10 N -0.522 5.522 11 C 0.048 3.952 12 C 0.242 3.758 13 H 0.026 0.974 14 O -0.566 6.566 15 C -0.591 4.591 16 H 0.055 0.945 17 C 0.029 3.971 18 N -0.896 5.896 19 Si 0.957 3.043 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.080 3.920 24 H 0.060 0.940 25 H 0.136 0.864 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.021 0.979 37 H 0.065 0.935 38 H 0.351 0.649 39 H 0.261 0.739 40 H 0.024 0.976 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.945 -12.198 -2.759 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.321 3.679 4 O -0.429 6.429 5 C -0.045 4.045 6 C -0.183 4.183 7 C -0.138 4.138 8 C -0.144 4.144 9 C -0.080 4.080 10 N -0.246 5.246 11 C -0.080 4.080 12 C 0.184 3.816 13 H 0.044 0.956 14 O -0.369 6.369 15 C -0.629 4.629 16 H 0.073 0.927 17 C -0.174 4.174 18 N -0.533 5.533 19 Si 0.782 3.218 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.048 4.048 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.478 -12.606 -2.774 20.153 hybrid contribution -0.368 2.280 -0.275 2.326 sum -15.845 -10.326 -3.048 19.157 Atomic orbital electron populations 1.23578 0.74880 1.05859 1.02388 1.86496 1.24806 1.32096 1.83403 1.23880 0.91913 0.81314 0.70758 1.90646 1.67847 1.37582 1.46865 1.20506 0.85648 0.97290 1.01041 1.21745 1.03036 1.00159 0.93361 1.21629 0.96053 1.01860 0.94209 1.21586 0.94833 0.94144 1.03794 1.22199 0.99770 0.96254 0.89746 1.61827 1.06935 1.17584 1.38290 1.22704 0.98642 0.87417 0.99260 1.19119 0.87919 0.89721 0.84803 0.95632 1.86493 1.75737 1.57306 1.17338 1.22056 0.93890 0.94036 1.52950 0.92705 1.25833 0.96923 1.00983 0.93621 1.70206 1.02734 1.32955 1.47400 0.85598 0.77470 0.80105 0.78611 1.19811 1.20777 1.19235 1.21822 0.88198 0.94142 1.00648 0.92124 0.84626 0.92172 0.90077 0.89996 0.93051 0.88046 0.91931 0.90335 0.89019 0.92130 0.95638 0.96102 0.91607 0.80445 0.92970 0.95777 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.30 10.40 -51.43 -0.53 -7.84 16 3 C 0.48 12.45 6.56 71.24 0.47 12.91 16 4 O -0.54 -17.27 15.74 21.97 0.35 -16.92 16 5 C -0.04 -1.11 0.71 -52.88 -0.04 -1.14 16 6 C -0.13 -2.98 7.97 71.98 0.57 -2.41 16 7 C -0.10 -2.16 4.72 30.67 0.14 -2.02 16 8 C -0.11 -2.59 5.74 30.65 0.18 -2.41 16 9 C 0.05 1.60 5.29 86.33 0.46 2.05 16 10 N -0.52 -18.68 3.80 -896.34 -3.41 -22.09 16 11 C 0.05 2.01 4.56 86.30 0.39 2.41 16 12 C 0.24 12.40 2.70 29.85 0.08 12.49 16 13 H 0.03 1.47 6.44 -2.39 -0.02 1.45 16 14 O -0.57 -29.48 12.60 -148.98 -1.88 -31.36 16 15 C -0.59 -32.74 8.76 25.60 0.22 -32.52 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.03 1.63 5.40 84.65 0.46 2.09 16 18 N -0.90 -53.45 12.84 21.45 0.28 -53.18 16 19 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.08 2.55 3.47 86.33 0.30 2.85 16 24 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 25 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 27 H 0.08 2.19 6.01 -2.39 -0.01 2.17 16 28 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 29 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.97 6.58 -2.38 -0.02 1.96 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 2.36 6.22 -2.39 -0.01 2.35 16 35 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.07 2.72 7.98 -2.39 -0.02 2.70 16 38 H 0.35 16.54 9.04 -74.06 -0.67 15.87 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 41 H 0.07 2.29 7.99 -2.38 -0.02 2.27 16 Total: -1.00 -67.33 328.43 1.61 -65.72 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.35 Total: 24.18 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.43 Total: -4.12 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -3.13 Total: -75.27 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -2.07 Total: -56.12 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.33 1.61 -65.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930739286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.778 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds