Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47067 * 300.00081 * 3 2 1 6 6 H 1.48496 * 109.47281 * 59.99750 * 3 2 1 7 7 C 1.37875 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99547 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00433 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.87396 * 62.38495 * 9 7 2 11 11 C 1.55139 * 110.98859 * 298.54581 * 9 7 2 12 12 C 1.54316 * 103.01810 * 206.25316 * 11 9 7 13 13 N 1.47446 * 107.23320 * 22.28197 * 12 11 9 14 14 C 1.46900 * 111.00255 * 123.25926 * 13 12 11 15 15 C 1.53005 * 109.47060 * 69.87065 * 14 13 12 16 16 O 1.42897 * 109.46671 * 65.00562 * 15 14 13 17 17 C 1.42906 * 113.99565 * 180.02562 * 16 15 14 18 18 H 1.08994 * 110.45971 * 332.59670 * 17 16 15 19 19 C 1.54516 * 110.50997 * 209.99608 * 17 16 15 20 20 C 1.54473 * 104.06521 * 241.35557 * 19 17 16 21 21 O 1.44429 * 104.80439 * 23.97839 * 20 19 17 22 22 C 1.44431 * 105.27293 * 319.49178 * 21 20 19 23 23 C 1.47843 * 108.56761 * 0.99070 * 13 12 11 24 24 H 0.96999 * 119.99481 * 0.02562 * 1 2 3 25 25 H 0.96698 * 113.99844 * 297.61512 * 10 9 7 26 26 H 1.08999 * 110.70823 * 87.87009 * 11 9 7 27 27 H 1.08996 * 110.85104 * 324.70450 * 11 9 7 28 28 H 1.08997 * 109.89177 * 262.87868 * 12 11 9 29 29 H 1.08994 * 109.89296 * 141.68633 * 12 11 9 30 30 H 1.08991 * 109.47253 * 189.87372 * 14 13 12 31 31 H 1.08999 * 109.46647 * 309.87636 * 14 13 12 32 32 H 1.08995 * 109.47149 * 185.00219 * 15 14 13 33 33 H 1.08992 * 109.46964 * 305.00345 * 15 14 13 34 34 H 1.09000 * 110.50747 * 0.02562 * 19 17 16 35 35 H 1.08998 * 110.50947 * 122.56609 * 19 17 16 36 36 H 1.09000 * 110.37621 * 142.80761 * 20 19 17 37 37 H 1.09003 * 110.36967 * 265.03818 * 20 19 17 38 38 H 1.09003 * 110.36558 * 281.67794 * 22 21 20 39 39 H 1.08994 * 110.37240 * 159.34493 * 22 21 20 40 40 H 1.08998 * 110.37465 * 94.73106 * 23 13 12 41 41 H 1.09003 * 110.37404 * 217.07863 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4609 -2.6310 -1.1829 11 6 0.3733 -2.6341 1.2726 12 6 0.2530 -4.1621 1.4515 13 7 1.3917 -4.7757 0.7438 14 6 2.1854 -5.6149 1.6514 15 6 1.3823 -6.8624 2.0257 16 8 1.1719 -7.6610 0.8596 17 6 0.4271 -8.8565 1.1005 18 1 0.5639 -9.1898 2.1292 19 6 0.8490 -9.9659 0.1113 20 6 -0.4436 -10.2802 -0.6739 21 8 -1.2418 -9.0814 -0.5659 22 6 -1.0706 -8.6318 0.7959 23 6 2.2185 -3.6985 0.1593 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2246 -1.9553 -1.2754 26 1 -0.6077 -2.1863 1.1133 27 1 0.8661 -2.1828 2.1337 28 1 -0.6844 -4.5133 1.0203 29 1 0.2945 -4.4159 2.5107 30 1 3.1094 -5.9128 1.1560 31 1 2.4221 -5.0510 2.5536 32 1 1.9336 -7.4404 2.7673 33 1 0.4195 -6.5638 2.4402 34 1 1.6261 -9.6026 -0.5612 35 1 1.1946 -10.8476 0.6510 36 1 -0.2119 -10.4890 -1.7184 37 1 -0.9640 -11.1263 -0.2250 38 1 -1.6882 -9.2238 1.4713 39 1 -1.3206 -7.5743 0.8806 40 1 3.0360 -3.4400 0.8322 41 1 2.6075 -4.0034 -0.8123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930818827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = -155.749632 kcal Electronic energy + Delta-G solvation = -21811.287114 eV Core-core repulsion = 18497.373572 eV Total energy + Delta-G solvation = -3313.913542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62323 -40.06276 -38.06222 -36.41868 -34.18743 -32.84461 -31.73300 -29.96514 -29.65000 -28.75370 -26.23057 -24.07553 -23.46032 -22.05933 -21.41865 -21.28692 -19.02115 -18.15707 -17.38907 -17.13673 -16.92398 -16.61877 -16.53869 -15.90629 -15.79821 -15.29174 -15.11280 -14.29753 -14.25890 -13.90838 -13.63012 -13.56948 -13.16872 -13.10136 -12.94846 -12.72017 -12.64047 -12.40124 -12.36582 -12.23127 -12.14239 -11.95980 -11.66954 -11.53946 -11.08070 -10.94438 -10.60305 -10.25188 -10.06165 -9.06870 -8.21662 -6.38103 1.38599 1.41912 1.52697 2.37788 2.74325 3.02369 3.06623 3.17908 3.64228 3.92615 3.93104 4.03769 4.10943 4.13004 4.24488 4.27859 4.35940 4.42083 4.45947 4.53416 4.60038 4.69154 4.75551 4.81349 4.83229 4.89858 4.92896 4.97541 5.08286 5.13781 5.27469 5.47828 5.54730 5.80028 5.83890 5.98316 6.24031 6.30546 6.51034 6.68268 7.33728 7.45631 8.83849 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.003928 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.347232 B = 7127.152901 C = 7368.951291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.562 4.562 8 H 0.054 0.946 9 C 0.232 3.768 10 O -0.590 6.590 11 C -0.134 4.134 12 C 0.055 3.945 13 N -0.529 5.529 14 C 0.046 3.954 15 C 0.071 3.929 16 O -0.384 6.384 17 C 0.048 3.952 18 H 0.103 0.897 19 C -0.150 4.150 20 C 0.039 3.961 21 O -0.407 6.407 22 C 0.021 3.979 23 C 0.068 3.932 24 H 0.268 0.732 25 H 0.370 0.630 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 -18.315 7.380 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.171 4.171 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.600 4.600 8 H 0.073 0.927 9 C 0.192 3.808 10 O -0.397 6.397 11 C -0.173 4.173 12 C -0.072 4.072 13 N -0.254 5.254 14 C -0.082 4.082 15 C -0.005 4.005 16 O -0.303 6.303 17 C -0.010 4.010 18 H 0.121 0.879 19 C -0.187 4.187 20 C -0.037 4.037 21 O -0.326 6.326 22 C -0.056 4.056 23 C -0.059 4.059 24 H 0.078 0.922 25 H 0.219 0.781 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.892 -18.918 6.556 20.042 hybrid contribution 0.165 2.170 0.837 2.331 sum 1.058 -16.748 7.392 18.338 Atomic orbital electron populations 1.69849 1.06906 1.28040 1.50265 1.25716 0.95825 1.02325 0.93211 0.85461 0.78912 0.79189 0.77746 1.19486 1.20562 1.20181 1.21854 0.93502 0.92145 1.52507 0.92742 1.19830 0.87569 0.91404 0.82010 1.86162 1.51410 1.56407 1.45727 1.23039 1.00795 0.94246 0.99234 1.22724 0.94479 0.93546 0.96492 1.63505 1.08921 1.20371 1.32566 1.22402 0.96808 0.93448 0.95551 1.22654 0.99085 0.91222 0.87572 1.88125 1.74084 1.34411 1.33664 1.23709 0.90680 0.85927 1.00651 0.87929 1.23100 0.98890 0.98210 0.98548 1.23623 0.90190 0.87822 1.02095 1.89152 1.70037 1.43413 1.30035 1.24064 0.96708 1.00815 0.83994 1.22803 0.94881 0.90065 0.98188 0.92237 0.78150 0.92673 0.93416 0.92693 0.91763 0.90430 0.92234 0.90069 0.93326 0.90934 0.86648 0.88733 0.89822 0.89223 0.90668 0.92884 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.90 10.75 21.45 0.23 -49.67 16 2 C 0.03 1.61 5.29 84.65 0.45 2.06 16 3 Si 0.96 42.77 29.54 68.60 2.03 44.79 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.56 -31.07 8.27 25.60 0.21 -30.86 16 8 H 0.05 2.99 7.79 -2.91 -0.02 2.97 16 9 C 0.23 12.07 0.87 -10.16 -0.01 12.06 16 10 O -0.59 -33.17 13.16 -148.98 -1.96 -35.13 16 11 C -0.13 -6.36 5.37 31.77 0.17 -6.19 16 12 C 0.06 2.19 6.13 86.64 0.53 2.73 16 13 N -0.53 -21.19 5.11 -885.56 -4.52 -25.71 16 14 C 0.05 1.39 4.92 86.30 0.42 1.82 16 15 C 0.07 1.76 5.88 71.98 0.42 2.18 16 16 O -0.38 -11.13 9.93 -148.98 -1.48 -12.60 16 17 C 0.05 1.02 3.61 31.61 0.11 1.13 16 18 H 0.10 1.47 7.82 -2.39 -0.02 1.45 16 19 C -0.15 -2.67 6.90 31.61 0.22 -2.45 16 20 C 0.04 0.74 7.63 72.48 0.55 1.29 16 21 O -0.41 -11.67 11.65 -148.98 -1.74 -13.41 16 22 C 0.02 0.50 7.38 72.48 0.53 1.03 16 23 C 0.07 3.11 5.86 86.77 0.51 3.62 16 24 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.37 20.97 7.56 -74.06 -0.56 20.41 16 26 H 0.05 2.82 7.54 -2.39 -0.02 2.80 16 27 H 0.05 2.27 8.04 -2.39 -0.02 2.25 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.13 6.94 -2.39 -0.02 2.12 16 30 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 32 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 33 H 0.05 1.19 7.04 -2.39 -0.02 1.17 16 34 H 0.07 1.56 8.00 -2.39 -0.02 1.55 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 40 H 0.05 2.28 7.70 -2.39 -0.02 2.26 16 41 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -66.43 327.36 -2.86 -69.29 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.45 Total: 34.02 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.13 Total: -11.58 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -4.29 Total: -75.38 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -5.18 Total: -61.15 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -66.43 -2.86 -69.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930818827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.456 kcal (2) G-P(sol) polarization free energy of solvation -66.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds