Wall clock time and date at job start Mon Mar 30 2020 00:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48498 * 109.46892 * 274.99935 * 3 2 1 5 5 H 1.48500 * 109.47051 * 34.99611 * 3 2 1 6 6 H 1.48501 * 109.47052 * 154.99940 * 3 2 1 7 7 C 1.37874 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00150 * 184.96309 * 7 2 1 9 9 C 1.50699 * 120.00156 * 4.96698 * 7 2 1 10 10 O 1.42906 * 110.27205 * 296.92681 * 9 7 2 11 11 C 1.54597 * 110.31077 * 59.11662 * 9 7 2 12 12 C 1.54940 * 102.91776 * 140.87437 * 11 9 7 13 13 N 1.48525 * 103.23003 * 322.58882 * 12 11 9 14 14 C 1.46898 * 111.00055 * 159.72189 * 13 12 11 15 15 C 1.53001 * 109.47426 * 52.60221 * 14 13 12 16 16 O 1.42903 * 109.47190 * 65.00138 * 15 14 13 17 17 C 1.42897 * 114.00265 * 180.02562 * 16 15 14 18 18 H 1.08996 * 110.45530 * 27.38986 * 17 16 15 19 19 C 1.54501 * 110.51229 * 150.00121 * 17 16 15 20 20 C 1.54479 * 104.06741 * 118.64174 * 19 17 16 21 21 O 1.44427 * 104.80147 * 23.97814 * 20 19 17 22 22 C 1.44430 * 105.27321 * 319.49160 * 21 20 19 23 23 C 1.47902 * 105.82203 * 39.20627 * 13 12 11 24 24 H 0.96999 * 119.99918 * 0.02562 * 1 2 3 25 25 H 0.96699 * 113.99599 * 57.90803 * 10 9 7 26 26 H 1.08992 * 110.72506 * 259.23660 * 11 9 7 27 27 H 1.09000 * 110.72396 * 22.34298 * 11 9 7 28 28 H 1.09001 * 110.66619 * 204.15024 * 12 11 9 29 29 H 1.08997 * 110.66780 * 81.02804 * 12 11 9 30 30 H 1.09002 * 109.47446 * 292.60543 * 14 13 12 31 31 H 1.08997 * 109.47707 * 172.60347 * 14 13 12 32 32 H 1.09001 * 109.46875 * 305.00593 * 15 14 13 33 33 H 1.08995 * 109.47584 * 185.00562 * 15 14 13 34 34 H 1.09006 * 110.51398 * 237.28610 * 19 17 16 35 35 H 1.09004 * 110.51594 * 359.85960 * 19 17 16 36 36 H 1.09004 * 110.37363 * 142.80503 * 20 19 17 37 37 H 1.08995 * 110.37203 * 265.04023 * 20 19 17 38 38 H 1.09001 * 110.36703 * 281.67950 * 22 21 20 39 39 H 1.08997 * 110.37326 * 159.34605 * 22 21 20 40 40 H 1.09003 * 109.91642 * 94.02430 * 23 13 12 41 41 H 1.08995 * 109.91957 * 215.31644 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0815 9 6 1.2554 -2.4967 -0.1119 10 8 0.3948 -2.6719 1.0155 11 6 0.4386 -2.5346 -1.4239 12 6 0.6073 -4.0010 -1.8948 13 7 2.0127 -4.3152 -1.5312 14 6 2.2240 -5.7668 -1.4520 15 6 1.7407 -6.4240 -2.7463 16 8 2.5525 -5.9828 -3.8365 17 6 2.1828 -6.5402 -5.0993 18 1 1.1226 -6.7930 -5.1084 19 6 2.5146 -5.5562 -6.2434 20 6 3.5349 -6.3229 -7.1138 21 8 3.2823 -7.7176 -6.8364 22 6 3.0418 -7.7850 -5.4138 23 6 2.2427 -3.6736 -0.2186 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2490 -1.9601 1.1331 26 1 -0.6104 -2.3093 -1.2319 27 1 0.8527 -1.8414 -2.1562 28 1 0.4622 -4.0782 -2.9723 29 1 -0.0831 -4.6571 -1.3648 30 1 1.6635 -6.1701 -0.6086 31 1 3.2855 -5.9725 -1.3145 32 1 0.7031 -6.1452 -2.9299 33 1 1.8148 -7.5074 -2.6534 34 1 1.6189 -5.3244 -6.8197 35 1 2.9584 -4.6435 -5.8456 36 1 3.3685 -6.1100 -8.1699 37 1 4.5526 -6.0560 -6.8294 38 1 3.9841 -7.7437 -4.8674 39 1 2.4968 -8.6952 -5.1638 40 1 2.0557 -4.3891 0.5822 41 1 3.2669 -3.3056 -0.1596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930818828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:36 Heat of formation + Delta-G solvation = -132.511888 kcal Electronic energy + Delta-G solvation = -21723.653321 eV Core-core repulsion = 18410.747443 eV Total energy + Delta-G solvation = -3312.905878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74488 -38.53959 -37.04326 -34.78492 -32.09124 -31.73780 -30.47305 -28.80286 -28.18533 -27.12818 -24.28148 -23.09359 -22.44927 -21.23511 -19.97937 -19.37112 -17.23967 -17.05273 -16.65221 -15.98022 -15.28384 -15.07148 -14.82363 -14.76536 -14.50249 -13.85381 -13.60542 -13.21458 -13.12180 -12.72238 -12.17365 -12.09734 -11.83747 -11.69430 -11.54584 -11.34398 -11.14910 -10.90665 -10.82460 -10.62510 -10.55058 -10.41877 -10.24542 -10.05641 -9.88969 -9.46831 -9.11722 -8.54373 -8.08483 -7.70950 -6.17578 -4.23108 3.25821 3.33043 3.37381 3.48957 3.95477 4.34714 4.42484 4.57561 4.64732 4.79422 5.05420 5.07185 5.12253 5.22343 5.31883 5.44043 5.51484 5.54729 5.57989 5.71496 5.74583 5.84967 5.88497 5.94363 6.08333 6.20075 6.27603 6.43528 6.51520 6.53956 6.96729 7.08742 7.26238 7.33098 7.55633 7.70597 7.76625 7.87561 8.20059 8.79071 9.42513 9.53574 10.90121 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.004114 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.652779 B = 6804.859820 C = 7373.540235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.115 4.115 12 C 0.031 3.969 13 N -0.504 5.504 14 C 0.047 3.953 15 C 0.063 3.937 16 O -0.353 6.353 17 C 0.054 3.946 18 H 0.073 0.927 19 C -0.156 4.156 20 C 0.046 3.954 21 O -0.376 6.376 22 C 0.024 3.976 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.382 0.618 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -12.274 -9.632 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.154 4.154 12 C -0.096 4.096 13 N -0.228 5.228 14 C -0.082 4.082 15 C -0.013 4.013 16 O -0.272 6.272 17 C -0.005 4.005 18 H 0.091 0.909 19 C -0.194 4.194 20 C -0.031 4.031 21 O -0.295 6.295 22 C -0.053 4.053 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.233 0.767 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.862 -12.560 -10.073 16.353 hybrid contribution -0.720 1.082 0.629 1.443 sum 2.142 -11.478 -9.444 15.018 Atomic orbital electron populations 1.69685 1.05963 1.27323 1.50925 1.25007 0.94965 0.99426 0.93922 0.86462 0.79964 0.82841 0.78041 1.20571 1.21211 1.19757 1.21707 0.93852 0.90680 1.50393 0.91989 1.19381 0.86245 0.91367 0.82797 1.86091 1.51967 1.51800 1.50686 1.22923 1.00650 0.92093 0.99718 1.23289 0.88470 0.98779 0.99078 1.64850 1.22919 1.07181 1.27899 1.22308 1.01806 0.90117 0.93957 1.22709 0.94550 0.96804 0.87269 1.88121 1.56183 1.68654 1.14195 1.23432 0.98480 0.92997 0.85552 0.90933 1.23016 1.00507 1.00090 0.95737 1.23414 0.98431 0.81025 1.00190 1.89112 1.91809 1.25625 1.22980 1.23960 0.99986 0.98797 0.82578 1.22885 1.00590 0.96027 0.87874 0.92443 0.76735 0.91803 0.91427 0.91817 0.95210 0.93607 0.90286 0.92921 0.93509 0.90008 0.88507 0.88998 0.91870 0.91096 0.89134 0.94754 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 10.89 55.43 0.60 -23.56 16 2 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.39 8.12 -34.44 -0.28 -14.67 16 8 H 0.06 1.69 7.36 -52.48 -0.39 1.31 16 9 C 0.24 6.09 0.99 -90.42 -0.09 6.00 16 10 O -0.60 -15.62 12.94 -35.23 -0.46 -16.08 16 11 C -0.12 -2.71 5.32 -24.87 -0.13 -2.84 16 12 C 0.03 0.62 5.09 -1.90 -0.01 0.61 16 13 N -0.50 -9.93 5.34 -230.46 -1.23 -11.16 16 14 C 0.05 0.74 5.41 -3.82 -0.02 0.72 16 15 C 0.06 0.84 5.60 37.16 0.21 1.05 16 16 O -0.35 -5.07 9.92 -35.23 -0.35 -5.42 16 17 C 0.05 0.63 3.61 -25.17 -0.09 0.54 16 18 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 19 C -0.16 -1.68 6.90 -25.17 -0.17 -1.85 16 20 C 0.05 0.46 7.63 37.93 0.29 0.75 16 21 O -0.38 -4.50 11.65 -35.23 -0.41 -4.91 16 22 C 0.02 0.26 7.38 37.93 0.28 0.54 16 23 C 0.05 1.19 6.17 -2.76 -0.02 1.18 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.38 10.15 7.29 45.56 0.33 10.48 16 26 H 0.06 1.55 7.99 -51.93 -0.41 1.14 16 27 H 0.07 1.70 7.85 -51.93 -0.41 1.29 16 28 H 0.06 1.17 7.56 -51.93 -0.39 0.77 16 29 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 30 H 0.05 0.70 7.81 -51.93 -0.41 0.29 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.70 6.48 -51.93 -0.34 0.37 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.16 8.00 -51.93 -0.42 0.74 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.75 7.39 -51.93 -0.38 0.36 16 41 H 0.08 1.78 7.39 -51.93 -0.38 1.39 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -28.95 325.24 -8.20 -37.15 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.11 Total: 9.42 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.13 Total: -6.24 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.63 Total: -34.72 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.22 Total: -26.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.95 -8.20 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930818828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.366 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds