Wall clock time and date at job start Mon Mar 30 2020 00:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00010 * 2 1 4 4 H 1.48498 * 109.46892 * 274.99935 * 3 2 1 5 5 H 1.48500 * 109.47051 * 34.99611 * 3 2 1 6 6 H 1.48501 * 109.47052 * 154.99940 * 3 2 1 7 7 C 1.37874 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00150 * 184.96309 * 7 2 1 9 9 C 1.50699 * 120.00156 * 4.96698 * 7 2 1 10 10 O 1.42906 * 110.27205 * 296.92681 * 9 7 2 11 11 C 1.54597 * 110.31077 * 59.11662 * 9 7 2 12 12 C 1.54940 * 102.91776 * 140.87437 * 11 9 7 13 13 N 1.48525 * 103.23003 * 322.58882 * 12 11 9 14 14 C 1.46898 * 111.00055 * 159.72189 * 13 12 11 15 15 C 1.53001 * 109.47426 * 52.60221 * 14 13 12 16 16 O 1.42903 * 109.47190 * 65.00138 * 15 14 13 17 17 C 1.42897 * 114.00265 * 180.02562 * 16 15 14 18 18 H 1.08996 * 110.45530 * 27.38986 * 17 16 15 19 19 C 1.54501 * 110.51229 * 150.00121 * 17 16 15 20 20 C 1.54479 * 104.06741 * 118.64174 * 19 17 16 21 21 O 1.44427 * 104.80147 * 23.97814 * 20 19 17 22 22 C 1.44430 * 105.27321 * 319.49160 * 21 20 19 23 23 C 1.47902 * 105.82203 * 39.20627 * 13 12 11 24 24 H 0.96999 * 119.99918 * 0.02562 * 1 2 3 25 25 H 0.96699 * 113.99599 * 57.90803 * 10 9 7 26 26 H 1.08992 * 110.72506 * 259.23660 * 11 9 7 27 27 H 1.09000 * 110.72396 * 22.34298 * 11 9 7 28 28 H 1.09001 * 110.66619 * 204.15024 * 12 11 9 29 29 H 1.08997 * 110.66780 * 81.02804 * 12 11 9 30 30 H 1.09002 * 109.47446 * 292.60543 * 14 13 12 31 31 H 1.08997 * 109.47707 * 172.60347 * 14 13 12 32 32 H 1.09001 * 109.46875 * 305.00593 * 15 14 13 33 33 H 1.08995 * 109.47584 * 185.00562 * 15 14 13 34 34 H 1.09006 * 110.51398 * 237.28610 * 19 17 16 35 35 H 1.09004 * 110.51594 * 359.85960 * 19 17 16 36 36 H 1.09004 * 110.37363 * 142.80503 * 20 19 17 37 37 H 1.08995 * 110.37203 * 265.04023 * 20 19 17 38 38 H 1.09001 * 110.36703 * 281.67950 * 22 21 20 39 39 H 1.08997 * 110.37326 * 159.34605 * 22 21 20 40 40 H 1.09003 * 109.91642 * 94.02430 * 23 13 12 41 41 H 1.08995 * 109.91957 * 215.31644 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0815 9 6 1.2554 -2.4967 -0.1119 10 8 0.3948 -2.6719 1.0155 11 6 0.4386 -2.5346 -1.4239 12 6 0.6073 -4.0010 -1.8948 13 7 2.0127 -4.3152 -1.5312 14 6 2.2240 -5.7668 -1.4520 15 6 1.7407 -6.4240 -2.7463 16 8 2.5525 -5.9828 -3.8365 17 6 2.1828 -6.5402 -5.0993 18 1 1.1226 -6.7930 -5.1084 19 6 2.5146 -5.5562 -6.2434 20 6 3.5349 -6.3229 -7.1138 21 8 3.2823 -7.7176 -6.8364 22 6 3.0418 -7.7850 -5.4138 23 6 2.2427 -3.6736 -0.2186 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2490 -1.9601 1.1331 26 1 -0.6104 -2.3093 -1.2319 27 1 0.8527 -1.8414 -2.1562 28 1 0.4622 -4.0782 -2.9723 29 1 -0.0831 -4.6571 -1.3648 30 1 1.6635 -6.1701 -0.6086 31 1 3.2855 -5.9725 -1.3145 32 1 0.7031 -6.1452 -2.9299 33 1 1.8148 -7.5074 -2.6534 34 1 1.6189 -5.3244 -6.8197 35 1 2.9584 -4.6435 -5.8456 36 1 3.3685 -6.1100 -8.1699 37 1 4.5526 -6.0560 -6.8294 38 1 3.9841 -7.7437 -4.8674 39 1 2.4968 -8.6952 -5.1638 40 1 2.0557 -4.3891 0.5822 41 1 3.2669 -3.3056 -0.1596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930818828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:35 Heat of formation + Delta-G solvation = -155.188810 kcal Electronic energy + Delta-G solvation = -21724.636666 eV Core-core repulsion = 18410.747443 eV Total energy + Delta-G solvation = -3313.889223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68024 -40.10462 -38.19565 -36.51384 -34.16801 -32.90705 -31.74133 -30.01945 -29.62514 -28.66313 -26.14456 -24.00376 -23.76053 -22.09854 -21.49248 -21.26519 -19.09630 -18.20163 -17.53612 -17.14487 -16.90083 -16.39653 -16.29681 -16.01940 -15.89376 -15.56456 -14.72709 -14.65957 -14.32319 -13.98209 -13.93132 -13.39057 -13.32341 -13.11632 -12.99979 -12.79918 -12.55693 -12.46270 -12.30979 -12.19166 -12.02266 -11.88668 -11.82855 -11.59244 -11.05963 -10.88767 -10.58324 -10.41524 -10.09160 -9.25996 -8.21691 -6.34941 1.40272 1.42473 1.52376 2.39751 2.56903 2.98842 3.11252 3.18280 3.60048 3.79575 3.89679 3.98188 4.02790 4.22575 4.27196 4.30030 4.32202 4.38125 4.40255 4.53770 4.61200 4.67904 4.73634 4.76696 4.81734 4.84806 4.93031 4.97001 5.05162 5.11838 5.24939 5.43507 5.60685 5.70189 5.77108 6.00195 6.16176 6.21852 6.40306 6.69585 7.34154 7.44326 8.84376 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.004114 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.652779 B = 6804.859820 C = 7373.540235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.225 3.775 10 O -0.602 6.602 11 C -0.108 4.108 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.044 3.956 15 C 0.067 3.933 16 O -0.377 6.377 17 C 0.050 3.950 18 H 0.085 0.915 19 C -0.157 4.157 20 C 0.045 3.955 21 O -0.392 6.392 22 C 0.026 3.974 23 C 0.062 3.938 24 H 0.269 0.731 25 H 0.377 0.623 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.037 0.963 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -13.268 -10.535 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.170 4.170 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.069 0.931 9 C 0.186 3.814 10 O -0.410 6.410 11 C -0.147 4.147 12 C -0.081 4.081 13 N -0.237 5.237 14 C -0.084 4.084 15 C -0.010 4.010 16 O -0.297 6.297 17 C -0.009 4.009 18 H 0.103 0.897 19 C -0.195 4.195 20 C -0.031 4.031 21 O -0.311 6.311 22 C -0.051 4.051 23 C -0.066 4.066 24 H 0.078 0.922 25 H 0.226 0.774 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.055 0.945 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.892 -13.572 -10.982 17.696 hybrid contribution -0.721 1.383 0.908 1.805 sum 2.170 -12.189 -10.074 15.961 Atomic orbital electron populations 1.69758 1.06780 1.28112 1.50611 1.25668 0.95814 1.02170 0.93394 0.85550 0.78746 0.79242 0.78108 1.20148 1.20485 1.19770 1.21958 0.93654 0.92316 1.51555 0.93054 1.19635 0.86777 0.91993 0.83004 1.86082 1.51992 1.51501 1.51463 1.22698 0.99118 0.94363 0.98480 1.23151 0.88833 0.96042 1.00095 1.64809 1.22742 1.10015 1.26174 1.22431 1.02482 0.87532 0.95996 1.22696 0.94147 0.98293 0.85840 1.88087 1.56791 1.69481 1.15291 1.23594 0.99336 0.93384 0.84550 0.89687 1.23042 1.01174 0.99401 0.95866 1.23517 0.98200 0.80160 1.01220 1.89097 1.91878 1.26547 1.23581 1.23992 0.99838 0.99228 0.82040 1.22694 0.99152 0.95291 0.89484 0.92178 0.77366 0.93243 0.93834 0.90057 0.94177 0.92669 0.89838 0.92805 0.90315 0.88784 0.90099 0.87088 0.91922 0.91662 0.87279 0.94486 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.42 10.89 21.45 0.23 -49.19 16 2 C 0.03 1.60 5.22 84.65 0.44 2.04 16 3 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.56 -30.84 8.12 25.60 0.21 -30.63 16 8 H 0.05 2.87 7.36 -2.91 -0.02 2.85 16 9 C 0.23 11.48 0.99 -10.66 -0.01 11.47 16 10 O -0.60 -31.89 12.94 -148.98 -1.93 -33.82 16 11 C -0.11 -5.11 5.32 31.80 0.17 -4.94 16 12 C 0.05 1.77 5.09 86.65 0.44 2.21 16 13 N -0.51 -19.63 5.34 -883.05 -4.72 -24.35 16 14 C 0.04 1.28 5.41 86.30 0.47 1.74 16 15 C 0.07 1.58 5.60 71.98 0.40 1.99 16 16 O -0.38 -10.06 9.92 -148.98 -1.48 -11.54 16 17 C 0.05 1.04 3.61 31.61 0.11 1.16 16 18 H 0.09 1.56 7.82 -2.39 -0.02 1.54 16 19 C -0.16 -3.14 6.90 31.61 0.22 -2.92 16 20 C 0.05 0.83 7.63 72.48 0.55 1.38 16 21 O -0.39 -8.59 11.65 -148.98 -1.74 -10.33 16 22 C 0.03 0.50 7.38 72.48 0.53 1.04 16 23 C 0.06 2.74 6.17 86.45 0.53 3.27 16 24 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.38 20.40 7.29 -74.06 -0.54 19.86 16 26 H 0.05 2.43 7.99 -2.39 -0.02 2.41 16 27 H 0.04 2.23 7.85 -2.39 -0.02 2.21 16 28 H 0.08 2.82 7.56 -2.39 -0.02 2.81 16 29 H 0.04 1.45 8.01 -2.39 -0.02 1.43 16 30 H 0.06 1.54 7.81 -2.39 -0.02 1.52 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.05 1.27 6.48 -2.39 -0.02 1.25 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 1.88 8.00 -2.38 -0.02 1.86 16 36 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.59 7.39 -2.39 -0.02 1.57 16 41 H 0.07 3.14 7.39 -2.39 -0.02 3.12 16 Total: -1.00 -61.29 325.24 -3.06 -64.35 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.47 Total: 32.03 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.07 Total: -12.20 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -4.49 Total: -73.53 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -5.14 Total: -55.70 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.29 -3.06 -64.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930818828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.837 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds