Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00063 * 2 1 4 4 O 1.20818 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46724 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47593 * 300.00073 * 6 5 3 8 8 N 1.46907 * 109.46961 * 180.02562 * 6 5 3 9 9 C 1.46900 * 111.00163 * 304.11590 * 8 6 5 10 10 C 1.52998 * 109.47475 * 185.84404 * 9 8 6 11 11 H 1.08996 * 109.47117 * 59.99889 * 10 9 8 12 12 O 1.42900 * 109.46874 * 300.00005 * 10 9 8 13 13 C 1.50694 * 109.47080 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00430 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00026 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00139 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99589 * 359.97438 * 15 13 10 18 18 H 1.48494 * 109.47472 * 90.00066 * 17 15 13 19 19 H 1.48506 * 109.47017 * 210.00061 * 17 15 13 20 20 H 1.48504 * 109.47309 * 329.99747 * 17 15 13 21 21 C 1.53001 * 109.47217 * 60.00569 * 6 5 3 22 22 C 1.52998 * 117.50063 * 249.24884 * 21 6 5 23 23 C 1.53001 * 117.50212 * 180.58508 * 21 6 5 24 24 H 1.09000 * 109.47009 * 60.00553 * 1 2 3 25 25 H 1.08999 * 109.47367 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47586 * 300.00147 * 1 2 3 27 27 H 1.08997 * 109.46881 * 60.00635 * 5 3 2 28 28 H 1.08995 * 109.47755 * 299.99926 * 5 3 2 29 29 H 1.08996 * 109.46988 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46607 * 60.00507 * 7 6 5 31 31 H 1.08999 * 109.47347 * 300.00640 * 7 6 5 32 32 H 1.00902 * 110.99597 * 68.06941 * 8 6 5 33 33 H 1.09001 * 109.46854 * 305.84913 * 9 8 6 34 34 H 1.09006 * 109.47090 * 65.84123 * 9 8 6 35 35 H 0.96698 * 114.00190 * 300.00364 * 12 10 9 36 36 H 0.97004 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.09010 * 115.54553 * 34.91622 * 21 6 5 38 38 H 1.09006 * 117.49479 * 359.97438 * 22 21 6 39 39 H 1.08995 * 117.50096 * 145.01666 * 22 21 6 40 40 H 1.09000 * 117.49978 * 214.97959 * 23 21 6 41 41 H 1.08999 * 117.49564 * 0.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 3.4536 3.4349 -1.2501 8 7 5.4671 2.8189 -0.0002 9 6 6.0331 2.0789 1.1355 10 6 7.5460 2.3014 1.1863 11 1 7.7530 3.3648 1.3060 12 8 8.1370 1.8349 -0.0283 13 6 8.1266 1.5418 2.3510 14 1 7.4812 0.9589 2.9914 15 6 9.4819 1.5917 2.5999 16 7 9.9886 0.9292 3.6167 17 14 10.5982 2.6003 1.4927 18 1 10.7019 3.9837 2.0223 19 1 11.9480 1.9822 1.4554 20 1 10.0324 2.6368 0.1202 21 6 3.4526 3.4364 1.2484 22 6 2.3515 4.4801 1.0509 23 6 3.7680 4.9230 1.4258 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 3.7622 4.4802 -1.2503 30 1 2.3650 3.3779 -1.2504 31 1 3.8435 2.9402 -2.1396 32 1 5.8466 2.4860 -0.8739 33 1 5.5822 2.4348 2.0619 34 1 5.8261 1.0155 1.0158 35 1 7.9925 0.8943 -0.2001 36 1 10.9420 0.9646 3.7919 37 1 3.4073 2.8208 2.1469 38 1 2.0174 4.6724 0.0313 39 1 1.5820 4.5515 1.8195 40 1 3.9298 5.2855 2.4409 41 1 4.3652 5.4064 0.6527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931508274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -99.864194 kcal Electronic energy + Delta-G solvation = -22135.296963 eV Core-core repulsion = 18823.806796 eV Total energy + Delta-G solvation = -3311.490168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84664 -38.86394 -36.56668 -36.16242 -34.39952 -32.23375 -31.13715 -29.16688 -27.72900 -27.13292 -24.21853 -23.38426 -21.97303 -21.18930 -20.45137 -18.44123 -17.66047 -17.23040 -16.73191 -16.58917 -15.45523 -15.41425 -14.86460 -14.58086 -14.35771 -14.09160 -13.53279 -13.40213 -13.20384 -12.66853 -12.48463 -12.38564 -12.15480 -11.95351 -11.55503 -11.43910 -11.24671 -10.96976 -10.85209 -10.81558 -10.56808 -10.30121 -10.28124 -9.97275 -9.84718 -9.65371 -9.02096 -8.61735 -8.30131 -7.95056 -6.11548 -4.22756 2.20276 2.67197 3.42336 3.51231 3.77765 4.07161 4.55972 4.59430 4.71370 4.80717 4.88185 4.93151 5.00347 5.19108 5.23025 5.31395 5.35522 5.41601 5.50283 5.54228 5.77283 5.88699 5.90085 6.01112 6.06164 6.07288 6.21824 6.24431 6.31661 6.44702 6.51404 6.57016 6.72578 7.28511 7.48771 7.64061 7.75645 7.89778 8.29413 8.83988 9.03212 9.53655 10.99071 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.004849 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.305955 B = 5773.109517 C = 6187.756007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.490 6.490 5 C -0.146 4.146 6 C 0.159 3.841 7 C -0.155 4.155 8 N -0.667 5.667 9 C 0.041 3.959 10 C 0.198 3.802 11 H 0.062 0.938 12 O -0.581 6.581 13 C -0.564 4.564 14 H 0.070 0.930 15 C 0.083 3.917 16 N -0.894 5.894 17 Si 0.873 3.127 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.217 1.217 21 C -0.133 4.133 22 C -0.158 4.158 23 C -0.165 4.165 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.342 0.658 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.351 0.649 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.562 0.921 -9.066 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.376 6.376 5 C -0.185 4.185 6 C 0.067 3.933 7 C -0.212 4.212 8 N -0.297 5.297 9 C -0.088 4.088 10 C 0.141 3.859 11 H 0.080 0.920 12 O -0.387 6.387 13 C -0.602 4.602 14 H 0.088 0.912 15 C -0.121 4.121 16 N -0.531 5.531 17 Si 0.700 3.300 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.139 1.139 21 C -0.152 4.152 22 C -0.195 4.195 23 C -0.202 4.202 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.197 0.803 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.421 2.421 -8.700 19.623 hybrid contribution 0.204 -1.241 -0.280 1.289 sum -17.217 1.180 -8.980 19.454 Atomic orbital electron populations 1.23197 0.76820 1.03371 1.02354 1.86545 1.23120 1.34174 1.84380 1.23773 0.92122 0.81162 0.72365 1.90615 1.67093 1.35573 1.44368 1.22436 0.87876 1.02273 1.05948 1.20209 0.88713 0.89336 0.95043 1.22221 1.02603 1.01170 0.95222 1.60709 1.02004 1.59893 1.07085 1.22680 0.98505 0.94362 0.93233 1.19797 0.86666 0.96181 0.83282 0.91993 1.86710 1.79057 1.28205 1.44681 1.21505 0.93927 1.31996 1.12791 0.91180 1.24995 0.98419 0.94278 0.94399 1.69962 1.13205 1.41405 1.28569 0.86992 0.78644 0.79372 0.84999 1.21426 1.22456 1.13907 1.21961 1.03493 0.92108 0.97650 1.22926 0.91296 1.02868 1.02410 1.22866 0.98392 0.96683 1.02266 0.92093 0.88463 0.92008 0.88027 0.87220 0.91631 0.89736 0.93436 0.83846 0.90812 0.95667 0.80328 0.92626 0.89091 0.88351 0.90129 0.89634 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.37 -4.28 10.56 -39.25 -0.41 -4.69 16 3 C 0.46 5.83 7.39 36.01 0.27 6.10 16 4 O -0.49 -6.67 10.77 -18.74 -0.20 -6.87 16 5 C -0.15 -1.81 4.50 -27.88 -0.13 -1.93 16 6 C 0.16 2.14 0.54 -131.60 -0.07 2.07 16 7 C -0.16 -1.92 7.02 37.16 0.26 -1.66 16 8 N -0.67 -10.41 5.96 -99.96 -0.60 -11.00 16 9 C 0.04 0.75 4.46 -3.83 -0.02 0.73 16 10 C 0.20 4.48 2.58 -27.89 -0.07 4.41 16 11 H 0.06 1.51 7.57 -51.93 -0.39 1.12 16 12 O -0.58 -12.49 9.59 -35.23 -0.34 -12.83 16 13 C -0.56 -15.39 9.34 -34.44 -0.32 -15.71 16 14 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 15 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 16 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 17 Si 0.87 21.84 26.99 -169.99 -4.59 17.26 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.22 -5.27 5.31 56.52 0.30 -4.97 16 21 C -0.13 -1.91 3.03 -90.62 -0.27 -2.18 16 22 C -0.16 -2.06 7.87 -26.69 -0.21 -2.27 16 23 C -0.16 -2.31 9.78 -26.69 -0.26 -2.57 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.11 1.44 6.48 -51.93 -0.34 1.10 16 29 H 0.06 0.83 7.06 -51.93 -0.37 0.47 16 30 H 0.08 1.07 4.49 -51.93 -0.23 0.84 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.34 5.17 8.22 -39.29 -0.32 4.84 16 33 H 0.07 1.43 6.86 -51.93 -0.36 1.07 16 34 H 0.03 0.45 6.59 -51.93 -0.34 0.10 16 35 H 0.35 6.61 9.04 45.56 0.41 7.02 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.09 1.38 7.85 -51.92 -0.41 0.97 16 38 H 0.10 1.27 5.76 -51.93 -0.30 0.97 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.10 1.41 7.57 -51.93 -0.39 1.02 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -31.06 320.66 -6.04 -37.10 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.65 Total: 11.97 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 0.14 Total: -9.35 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.18 Total: -37.42 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.95 Total: -24.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.06 -6.04 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931508274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.760 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds