Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00063 * 2 1 4 4 O 1.20818 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46724 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47593 * 300.00073 * 6 5 3 8 8 N 1.46907 * 109.46961 * 180.02562 * 6 5 3 9 9 C 1.46900 * 111.00163 * 304.11590 * 8 6 5 10 10 C 1.52998 * 109.47475 * 185.84404 * 9 8 6 11 11 H 1.08996 * 109.47117 * 59.99889 * 10 9 8 12 12 O 1.42900 * 109.46874 * 300.00005 * 10 9 8 13 13 C 1.50694 * 109.47080 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00430 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00026 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00139 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99589 * 359.97438 * 15 13 10 18 18 H 1.48494 * 109.47472 * 90.00066 * 17 15 13 19 19 H 1.48506 * 109.47017 * 210.00061 * 17 15 13 20 20 H 1.48504 * 109.47309 * 329.99747 * 17 15 13 21 21 C 1.53001 * 109.47217 * 60.00569 * 6 5 3 22 22 C 1.52998 * 117.50063 * 249.24884 * 21 6 5 23 23 C 1.53001 * 117.50212 * 180.58508 * 21 6 5 24 24 H 1.09000 * 109.47009 * 60.00553 * 1 2 3 25 25 H 1.08999 * 109.47367 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47586 * 300.00147 * 1 2 3 27 27 H 1.08997 * 109.46881 * 60.00635 * 5 3 2 28 28 H 1.08995 * 109.47755 * 299.99926 * 5 3 2 29 29 H 1.08996 * 109.46988 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46607 * 60.00507 * 7 6 5 31 31 H 1.08999 * 109.47347 * 300.00640 * 7 6 5 32 32 H 1.00902 * 110.99597 * 68.06941 * 8 6 5 33 33 H 1.09001 * 109.46854 * 305.84913 * 9 8 6 34 34 H 1.09006 * 109.47090 * 65.84123 * 9 8 6 35 35 H 0.96698 * 114.00190 * 300.00364 * 12 10 9 36 36 H 0.97004 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.09010 * 115.54553 * 34.91622 * 21 6 5 38 38 H 1.09006 * 117.49479 * 359.97438 * 22 21 6 39 39 H 1.08995 * 117.50096 * 145.01666 * 22 21 6 40 40 H 1.09000 * 117.49978 * 214.97959 * 23 21 6 41 41 H 1.08999 * 117.49564 * 0.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 3.4536 3.4349 -1.2501 8 7 5.4671 2.8189 -0.0002 9 6 6.0331 2.0789 1.1355 10 6 7.5460 2.3014 1.1863 11 1 7.7530 3.3648 1.3060 12 8 8.1370 1.8349 -0.0283 13 6 8.1266 1.5418 2.3510 14 1 7.4812 0.9589 2.9914 15 6 9.4819 1.5917 2.5999 16 7 9.9886 0.9292 3.6167 17 14 10.5982 2.6003 1.4927 18 1 10.7019 3.9837 2.0223 19 1 11.9480 1.9822 1.4554 20 1 10.0324 2.6368 0.1202 21 6 3.4526 3.4364 1.2484 22 6 2.3515 4.4801 1.0509 23 6 3.7680 4.9230 1.4258 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 3.7622 4.4802 -1.2503 30 1 2.3650 3.3779 -1.2504 31 1 3.8435 2.9402 -2.1396 32 1 5.8466 2.4860 -0.8739 33 1 5.5822 2.4348 2.0619 34 1 5.8261 1.0155 1.0158 35 1 7.9925 0.8943 -0.2001 36 1 10.9420 0.9646 3.7919 37 1 3.4073 2.8208 2.1469 38 1 2.0174 4.6724 0.0313 39 1 1.5820 4.5515 1.8195 40 1 3.9298 5.2855 2.4409 41 1 4.3652 5.4064 0.6527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931508274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -122.625674 kcal Electronic energy + Delta-G solvation = -22136.283975 eV Core-core repulsion = 18823.806796 eV Total energy + Delta-G solvation = -3312.477180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83241 -39.95358 -38.12142 -37.21714 -35.67599 -34.38311 -32.42904 -30.29469 -29.32596 -27.93325 -25.90274 -24.54918 -23.06020 -22.26003 -22.10516 -19.71407 -19.09745 -18.61799 -17.72235 -17.50085 -16.89508 -16.81445 -16.43334 -16.04287 -15.70970 -15.44244 -14.97403 -14.59634 -14.37552 -14.22723 -13.82626 -13.44632 -13.33695 -13.04512 -12.91975 -12.88938 -12.59186 -12.44423 -12.36094 -11.98286 -11.83275 -11.67891 -11.58300 -11.30484 -11.04276 -10.93812 -10.80536 -10.73331 -10.11740 -9.25159 -8.32465 -6.46493 1.24285 1.43596 1.48511 1.78450 1.81703 2.47040 2.93588 3.06506 3.46675 3.61829 3.74427 3.94147 4.15553 4.18000 4.23183 4.32351 4.33097 4.37213 4.43255 4.46827 4.54355 4.58170 4.72458 4.82632 4.88254 4.95075 5.02371 5.16946 5.20372 5.25929 5.42383 5.43264 5.50040 5.55518 5.61529 6.11097 6.19290 6.60616 6.70343 6.82501 7.24593 7.39705 8.81753 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.004849 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.305955 B = 5773.109517 C = 6187.756007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.144 4.144 6 C 0.162 3.838 7 C -0.148 4.148 8 N -0.666 5.666 9 C 0.059 3.941 10 C 0.208 3.792 11 H 0.049 0.951 12 O -0.580 6.580 13 C -0.563 4.563 14 H 0.036 0.964 15 C 0.028 3.972 16 N -0.942 5.942 17 Si 0.939 3.061 18 H -0.290 1.290 19 H -0.300 1.300 20 H -0.201 1.201 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.170 4.170 24 H 0.066 0.934 25 H 0.124 0.876 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.349 0.651 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.367 0.633 36 H 0.266 0.734 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.525 1.197 -11.163 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.291 6.291 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.184 4.184 6 C 0.071 3.929 7 C -0.205 4.205 8 N -0.298 5.298 9 C -0.070 4.070 10 C 0.150 3.850 11 H 0.067 0.933 12 O -0.386 6.386 13 C -0.602 4.602 14 H 0.054 0.946 15 C -0.171 4.171 16 N -0.581 5.581 17 Si 0.764 3.236 18 H -0.217 1.217 19 H -0.227 1.227 20 H -0.123 1.123 21 C -0.165 4.165 22 C -0.177 4.177 23 C -0.208 4.208 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.214 0.786 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.412 2.682 -10.816 21.522 hybrid contribution 0.389 -1.391 0.413 1.502 sum -18.024 1.292 -10.403 20.851 Atomic orbital electron populations 1.23476 0.74996 1.05294 1.02529 1.86522 1.24939 1.33561 1.84064 1.23681 0.92090 0.81295 0.72070 1.90603 1.67378 1.36003 1.45096 1.22350 0.88243 1.01362 1.06404 1.20190 0.87167 0.90252 0.95323 1.22143 1.02474 1.00916 0.94929 1.60581 1.03441 1.59424 1.06314 1.22263 0.95628 0.95119 0.93981 1.19511 0.89101 0.94510 0.81897 0.93337 1.86622 1.79139 1.29579 1.43291 1.21866 0.93512 1.31191 1.13589 0.94583 1.25845 1.00171 0.95413 0.95684 1.70089 1.13619 1.43664 1.30754 0.85990 0.76507 0.77359 0.83763 1.21702 1.22700 1.12263 1.22016 1.04642 0.92164 0.97672 1.22894 0.90762 1.01327 1.02755 1.22861 0.99255 0.96528 1.02120 0.91554 0.85772 0.92212 0.86207 0.88117 0.91958 0.89753 0.92055 0.83074 0.92206 0.94905 0.78606 0.92576 0.90494 0.87788 0.89781 0.89849 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.37 -8.07 10.56 -51.38 -0.54 -8.61 16 3 C 0.47 10.93 7.39 71.24 0.53 11.45 16 4 O -0.50 -12.82 10.77 21.99 0.24 -12.58 16 5 C -0.14 -3.31 4.50 29.85 0.13 -3.18 16 6 C 0.16 4.09 0.54 3.53 0.00 4.09 16 7 C -0.15 -3.29 7.02 71.98 0.51 -2.78 16 8 N -0.67 -19.57 5.96 -470.16 -2.80 -22.37 16 9 C 0.06 2.13 4.46 86.30 0.39 2.51 16 10 C 0.21 9.17 2.58 29.85 0.08 9.25 16 11 H 0.05 2.31 7.57 -2.39 -0.02 2.29 16 12 O -0.58 -23.44 9.59 -148.98 -1.43 -24.87 16 13 C -0.56 -30.96 9.34 25.60 0.24 -30.72 16 14 H 0.04 2.18 7.99 -2.91 -0.02 2.15 16 15 C 0.03 1.62 5.47 84.66 0.46 2.09 16 16 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 17 Si 0.94 45.05 26.99 68.60 1.85 46.90 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 20 H -0.20 -9.06 5.31 99.48 0.53 -8.53 16 21 C -0.15 -4.05 3.03 -10.79 -0.03 -4.08 16 22 C -0.14 -3.48 7.87 30.62 0.24 -3.24 16 23 C -0.17 -4.64 9.78 30.62 0.30 -4.34 16 24 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 25 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 0.91 8.13 -2.39 -0.02 0.90 16 27 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.10 2.53 6.48 -2.39 -0.02 2.51 16 29 H 0.06 1.44 7.06 -2.39 -0.02 1.42 16 30 H 0.08 1.94 4.49 -2.38 -0.01 1.92 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.35 9.56 8.22 -89.69 -0.74 8.82 16 33 H 0.06 2.32 6.86 -2.39 -0.02 2.30 16 34 H 0.03 1.13 6.59 -2.38 -0.02 1.11 16 35 H 0.37 12.79 9.04 -74.06 -0.67 12.12 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.08 2.34 7.85 -2.38 -0.02 2.32 16 38 H 0.10 2.49 5.76 -2.38 -0.01 2.47 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.09 2.63 7.57 -2.39 -0.02 2.61 16 Total: -1.00 -66.03 320.66 1.11 -64.92 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.54 Total: 31.96 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.04 Total: -17.30 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.50 Total: -80.41 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -1.74 Total: -46.07 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.85 Total: 46.90 kcal Total: -66.03 1.11 -64.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931508274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.709 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds