Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99955 * 2 1 4 4 O 1.20829 * 119.99475 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.46670 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47288 * 60.00805 * 6 5 3 8 8 N 1.46904 * 109.46571 * 180.02562 * 6 5 3 9 9 C 1.46897 * 111.00098 * 305.20356 * 8 6 5 10 10 C 1.53005 * 109.47058 * 184.47398 * 9 8 6 11 11 H 1.08997 * 109.47415 * 59.99721 * 10 9 8 12 12 O 1.42907 * 109.46966 * 299.99681 * 10 9 8 13 13 C 1.50701 * 109.47110 * 180.02562 * 10 9 8 14 14 H 1.07996 * 120.00214 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99981 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99885 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00015 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46979 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47002 * 119.99987 * 17 15 13 20 20 H 1.48502 * 109.46960 * 239.99692 * 17 15 13 21 21 C 1.53001 * 109.47468 * 299.99931 * 6 5 3 22 22 C 1.52997 * 117.50281 * 249.67378 * 21 6 5 23 23 C 1.52996 * 117.49862 * 181.01401 * 21 6 5 24 24 H 1.08992 * 109.47144 * 299.98947 * 1 2 3 25 25 H 1.08995 * 109.47349 * 59.99924 * 1 2 3 26 26 H 1.09002 * 109.46554 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46370 * 60.00830 * 5 3 2 28 28 H 1.09000 * 109.47513 * 300.00866 * 5 3 2 29 29 H 1.09005 * 109.47468 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46702 * 299.99437 * 7 6 5 31 31 H 1.09000 * 109.47650 * 59.99409 * 7 6 5 32 32 H 1.00899 * 110.99860 * 181.25017 * 8 6 5 33 33 H 1.08992 * 109.47346 * 304.46791 * 9 8 6 34 34 H 1.08996 * 109.47301 * 64.47790 * 9 8 6 35 35 H 0.96695 * 113.99883 * 300.00460 * 12 10 9 36 36 H 0.97000 * 119.99722 * 180.02562 * 16 15 13 37 37 H 1.08997 * 115.54472 * 35.34780 * 21 6 5 38 38 H 1.09007 * 117.49913 * 0.02562 * 22 21 6 39 39 H 1.09001 * 117.50018 * 145.01876 * 22 21 6 40 40 H 1.09002 * 117.50279 * 214.98062 * 23 21 6 41 41 H 1.09003 * 117.50007 * 0.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9999 2.7422 0.0011 7 6 3.4526 3.4354 1.2503 8 7 5.4670 2.8191 0.0011 9 6 6.0342 2.0568 1.1213 10 6 7.5515 2.2511 1.1541 11 1 7.7796 3.3092 1.2822 12 8 8.1177 1.7868 -0.0731 13 6 8.1334 1.4685 2.3030 14 1 7.4859 0.8907 2.9458 15 6 9.4926 1.4901 2.5335 16 7 10.2813 2.1933 1.7504 17 14 10.2141 0.5195 3.9571 18 1 9.1237 -0.1826 4.6805 19 1 11.1844 -0.4765 3.4358 20 1 10.9077 1.4465 4.8871 21 6 3.4533 3.4361 -1.2482 22 6 4.4593 3.8482 -2.3247 23 6 3.8002 4.9132 -1.4447 24 1 -0.3633 0.5136 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.9563 0.7808 -0.8893 28 1 3.9558 0.7809 0.8907 29 1 3.7619 4.4806 1.2510 30 1 2.3640 3.3783 1.2500 31 1 3.8420 2.9411 2.1404 32 1 5.7787 3.7785 0.0219 33 1 5.6024 2.4108 2.0573 34 1 5.8061 0.9987 0.9932 35 1 7.9537 0.8510 -0.2528 36 1 11.2375 2.2082 1.9124 37 1 2.4703 3.1016 -1.5795 38 1 5.5106 3.6246 -2.1432 39 1 4.1380 3.7852 -3.3644 40 1 3.0456 5.5504 -1.9058 41 1 4.4182 5.3906 -0.6842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931508275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -104.108189 kcal Electronic energy + Delta-G solvation = -21991.040403 eV Core-core repulsion = 18679.366202 eV Total energy + Delta-G solvation = -3311.674201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82959 -38.82611 -36.46148 -35.94482 -34.21421 -32.08230 -31.03636 -28.90665 -27.43377 -27.05422 -24.58170 -22.91839 -21.91730 -21.41924 -20.39175 -18.78541 -17.63472 -16.90609 -16.58866 -16.31254 -15.74677 -14.98176 -14.60036 -14.48913 -14.15131 -13.94692 -13.45599 -13.22763 -13.14136 -12.80120 -12.61673 -12.22028 -12.14681 -11.94090 -11.31638 -11.18762 -11.03590 -10.97343 -10.92128 -10.79999 -10.70272 -10.50523 -10.17815 -10.00147 -9.87709 -9.73521 -8.98083 -8.58039 -8.06769 -7.76222 -6.00651 -4.18942 2.18781 2.66058 3.26448 3.34995 3.37789 4.08532 4.36053 4.58423 4.79961 4.86166 4.93757 5.00609 5.02749 5.19736 5.27638 5.32542 5.35528 5.43984 5.65676 5.75198 5.82043 5.89413 5.97787 6.04728 6.13486 6.19771 6.26224 6.37110 6.45757 6.47277 6.58724 6.68656 6.86939 7.57409 7.68697 7.74494 7.84616 7.91040 8.20296 8.85094 9.46420 9.62563 11.03483 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.004853 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.127830 B = 5768.686930 C = 6633.629026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.500 6.500 5 C -0.102 4.102 6 C 0.156 3.844 7 C -0.191 4.191 8 N -0.665 5.665 9 C 0.025 3.975 10 C 0.234 3.766 11 H 0.050 0.950 12 O -0.555 6.555 13 C -0.573 4.573 14 H 0.055 0.945 15 C 0.080 3.920 16 N -0.858 5.858 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.139 4.139 22 C -0.169 4.169 23 C -0.183 4.183 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.342 0.658 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.344 0.656 36 H 0.259 0.741 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.917 -1.387 -4.705 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.388 6.388 5 C -0.140 4.140 6 C 0.064 3.936 7 C -0.250 4.250 8 N -0.297 5.297 9 C -0.104 4.104 10 C 0.176 3.824 11 H 0.068 0.932 12 O -0.357 6.357 13 C -0.611 4.611 14 H 0.073 0.927 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.157 4.157 22 C -0.207 4.207 23 C -0.220 4.220 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.187 0.813 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.674 -0.904 -5.231 17.498 hybrid contribution -0.235 -0.441 1.771 1.840 sum -16.908 -1.345 -3.460 17.311 Atomic orbital electron populations 1.23219 0.76754 1.03471 1.02384 1.86542 1.23142 1.33899 1.84245 1.23918 0.92410 0.81060 0.71892 1.90597 1.67385 1.35815 1.45028 1.21474 0.86361 0.99536 1.06625 1.20029 0.89146 0.91070 0.93329 1.22737 1.03561 1.00701 0.97971 1.60724 1.03946 1.18111 1.46912 1.23037 0.99826 0.97406 0.90091 1.19305 0.83987 0.95764 0.83313 0.93203 1.86554 1.79785 1.27474 1.41855 1.21665 0.92824 1.32058 1.14578 0.92690 1.25022 0.97291 0.94711 0.95602 1.70093 1.04042 1.38767 1.36478 0.86639 0.79237 0.80058 0.82562 1.19762 1.20858 1.20958 1.22360 0.99467 0.96757 0.97130 1.23059 1.00537 1.02293 0.94764 1.22862 1.03708 0.91711 1.03733 0.92023 0.92032 0.88318 0.86744 0.87263 0.92629 0.90246 0.92670 0.83812 0.95382 0.91797 0.81325 0.93069 0.87536 0.86384 0.90003 0.89652 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.32 10.57 -39.27 -0.41 -4.73 16 3 C 0.46 6.11 7.21 36.01 0.26 6.37 16 4 O -0.50 -7.29 11.44 -18.75 -0.21 -7.51 16 5 C -0.10 -1.36 4.47 -27.88 -0.12 -1.49 16 6 C 0.16 2.25 0.54 -131.60 -0.07 2.17 16 7 C -0.19 -2.79 7.90 37.15 0.29 -2.50 16 8 N -0.67 -11.03 4.52 -99.97 -0.45 -11.48 16 9 C 0.02 0.48 4.43 -3.82 -0.02 0.46 16 10 C 0.23 5.70 2.99 -27.88 -0.08 5.62 16 11 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 12 O -0.55 -13.92 12.59 -35.23 -0.44 -14.36 16 13 C -0.57 -15.32 8.76 -34.44 -0.30 -15.62 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -25.12 12.84 55.43 0.71 -24.41 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.14 -1.91 4.50 -90.62 -0.41 -2.32 16 22 C -0.17 -2.29 9.76 -26.70 -0.26 -2.55 16 23 C -0.18 -2.39 9.41 -26.70 -0.25 -2.64 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.11 1.46 6.43 -51.93 -0.33 1.13 16 29 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 30 H 0.08 1.19 5.52 -51.93 -0.29 0.90 16 31 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.34 5.90 7.41 -39.29 -0.29 5.60 16 33 H 0.03 0.54 6.25 -51.93 -0.32 0.22 16 34 H 0.06 1.18 6.50 -51.93 -0.34 0.85 16 35 H 0.34 7.77 9.04 45.56 0.41 8.18 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.11 1.53 6.09 -51.93 -0.32 1.21 16 38 H 0.12 1.81 6.82 -51.92 -0.35 1.45 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.19 7.18 -51.93 -0.37 0.81 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -30.10 326.80 -6.33 -36.43 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.42 Total: 14.26 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 0.01 Total: -9.02 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.26 Total: -35.89 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.07 Total: -26.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.10 -6.33 -36.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931508275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.683 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds