Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99955 * 2 1 4 4 O 1.20829 * 119.99475 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.46670 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47288 * 60.00805 * 6 5 3 8 8 N 1.46904 * 109.46571 * 180.02562 * 6 5 3 9 9 C 1.46897 * 111.00098 * 305.20356 * 8 6 5 10 10 C 1.53005 * 109.47058 * 184.47398 * 9 8 6 11 11 H 1.08997 * 109.47415 * 59.99721 * 10 9 8 12 12 O 1.42907 * 109.46966 * 299.99681 * 10 9 8 13 13 C 1.50701 * 109.47110 * 180.02562 * 10 9 8 14 14 H 1.07996 * 120.00214 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99981 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99885 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00015 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46979 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47002 * 119.99987 * 17 15 13 20 20 H 1.48502 * 109.46960 * 239.99692 * 17 15 13 21 21 C 1.53001 * 109.47468 * 299.99931 * 6 5 3 22 22 C 1.52997 * 117.50281 * 249.67378 * 21 6 5 23 23 C 1.52996 * 117.49862 * 181.01401 * 21 6 5 24 24 H 1.08992 * 109.47144 * 299.98947 * 1 2 3 25 25 H 1.08995 * 109.47349 * 59.99924 * 1 2 3 26 26 H 1.09002 * 109.46554 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46370 * 60.00830 * 5 3 2 28 28 H 1.09000 * 109.47513 * 300.00866 * 5 3 2 29 29 H 1.09005 * 109.47468 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46702 * 299.99437 * 7 6 5 31 31 H 1.09000 * 109.47650 * 59.99409 * 7 6 5 32 32 H 1.00899 * 110.99860 * 181.25017 * 8 6 5 33 33 H 1.08992 * 109.47346 * 304.46791 * 9 8 6 34 34 H 1.08996 * 109.47301 * 64.47790 * 9 8 6 35 35 H 0.96695 * 113.99883 * 300.00460 * 12 10 9 36 36 H 0.97000 * 119.99722 * 180.02562 * 16 15 13 37 37 H 1.08997 * 115.54472 * 35.34780 * 21 6 5 38 38 H 1.09007 * 117.49913 * 0.02562 * 22 21 6 39 39 H 1.09001 * 117.50018 * 145.01876 * 22 21 6 40 40 H 1.09002 * 117.50279 * 214.98062 * 23 21 6 41 41 H 1.09003 * 117.50007 * 0.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9999 2.7422 0.0011 7 6 3.4526 3.4354 1.2503 8 7 5.4670 2.8191 0.0011 9 6 6.0342 2.0568 1.1213 10 6 7.5515 2.2511 1.1541 11 1 7.7796 3.3092 1.2822 12 8 8.1177 1.7868 -0.0731 13 6 8.1334 1.4685 2.3030 14 1 7.4859 0.8907 2.9458 15 6 9.4926 1.4901 2.5335 16 7 10.2813 2.1933 1.7504 17 14 10.2141 0.5195 3.9571 18 1 9.1237 -0.1826 4.6805 19 1 11.1844 -0.4765 3.4358 20 1 10.9077 1.4465 4.8871 21 6 3.4533 3.4361 -1.2482 22 6 4.4593 3.8482 -2.3247 23 6 3.8002 4.9132 -1.4447 24 1 -0.3633 0.5136 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.9563 0.7808 -0.8893 28 1 3.9558 0.7809 0.8907 29 1 3.7619 4.4806 1.2510 30 1 2.3640 3.3783 1.2500 31 1 3.8420 2.9411 2.1404 32 1 5.7787 3.7785 0.0219 33 1 5.6024 2.4108 2.0573 34 1 5.8061 0.9987 0.9932 35 1 7.9537 0.8510 -0.2528 36 1 11.2375 2.2082 1.9124 37 1 2.4703 3.1016 -1.5795 38 1 5.5106 3.6246 -2.1432 39 1 4.1380 3.7852 -3.3644 40 1 3.0456 5.5504 -1.9058 41 1 4.4182 5.3906 -0.6842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931508275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -124.841433 kcal Electronic energy + Delta-G solvation = -21991.939464 eV Core-core repulsion = 18679.366202 eV Total energy + Delta-G solvation = -3312.573262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87034 -39.97515 -37.80615 -37.34163 -35.58898 -34.17412 -32.38662 -30.12221 -29.07767 -27.93950 -26.28366 -24.23417 -22.99010 -22.70043 -21.87402 -20.00134 -18.84642 -18.64070 -17.53869 -17.52363 -16.86587 -16.63242 -16.21781 -16.04150 -15.66819 -15.17678 -14.85521 -14.51754 -14.24368 -14.06306 -14.06087 -13.56083 -13.32521 -13.01936 -12.93782 -12.82591 -12.73884 -12.35672 -12.26242 -12.11419 -11.97216 -11.88384 -11.63448 -11.21768 -10.97754 -10.91930 -10.85245 -10.67738 -10.00617 -9.15931 -8.10152 -6.35212 1.17169 1.41320 1.43375 1.54586 1.74858 2.41061 2.99013 3.16521 3.33584 3.66743 3.72403 4.01678 4.08014 4.22938 4.32524 4.34228 4.37054 4.39907 4.47795 4.56544 4.59211 4.63888 4.72170 4.76621 4.87581 4.88878 4.97751 5.14321 5.18310 5.26155 5.34125 5.47771 5.55833 5.65840 5.81726 6.07744 6.24906 6.46264 6.76375 6.79018 7.39448 7.69079 8.94329 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.004853 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.127830 B = 5768.686930 C = 6633.629026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.469 3.531 4 O -0.517 6.517 5 C -0.102 4.102 6 C 0.158 3.842 7 C -0.184 4.184 8 N -0.662 5.662 9 C 0.046 3.954 10 C 0.235 3.765 11 H 0.014 0.986 12 O -0.569 6.569 13 C -0.584 4.584 14 H 0.060 0.940 15 C 0.027 3.973 16 N -0.900 5.900 17 Si 0.956 3.044 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.282 1.282 21 C -0.139 4.139 22 C -0.168 4.168 23 C -0.179 4.179 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.338 0.662 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.354 0.646 36 H 0.260 0.740 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.277 -2.445 -4.501 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.314 3.686 4 O -0.406 6.406 5 C -0.140 4.140 6 C 0.066 3.934 7 C -0.243 4.243 8 N -0.293 5.293 9 C -0.083 4.083 10 C 0.176 3.824 11 H 0.032 0.968 12 O -0.373 6.373 13 C -0.622 4.622 14 H 0.078 0.922 15 C -0.176 4.176 16 N -0.537 5.537 17 Si 0.782 3.218 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.208 1.208 21 C -0.158 4.158 22 C -0.205 4.205 23 C -0.216 4.216 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.157 0.843 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.198 0.802 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.061 -1.984 -5.025 18.852 hybrid contribution 0.118 -0.110 1.667 1.675 sum -17.943 -2.094 -3.358 18.374 Atomic orbital electron populations 1.23529 0.74793 1.05564 1.02571 1.86520 1.25053 1.32997 1.83813 1.23726 0.92173 0.81245 0.71500 1.90589 1.67687 1.36398 1.45948 1.21424 0.87033 0.98599 1.06960 1.20050 0.87411 0.92161 0.93732 1.22666 1.03422 1.00536 0.97675 1.60676 1.05544 1.17585 1.45521 1.22626 0.96237 0.98397 0.91005 1.19164 0.87181 0.93432 0.82574 0.96772 1.86500 1.80436 1.28379 1.41956 1.22077 0.93194 1.31794 1.15139 0.92192 1.25858 0.97888 0.95692 0.98134 1.70228 1.04273 1.40606 1.38585 0.85559 0.78484 0.78530 0.79266 1.18679 1.20569 1.20820 1.22288 0.99385 0.97301 0.96815 1.22995 0.99355 1.02562 0.95596 1.22921 1.03722 0.91524 1.03384 0.91997 0.91725 0.85358 0.86104 0.87245 0.92781 0.90256 0.93336 0.84326 0.95485 0.90710 0.80174 0.93130 0.87494 0.88311 0.88492 0.88146 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.37 -8.05 10.57 -51.46 -0.54 -8.60 16 3 C 0.47 11.63 7.21 71.24 0.51 12.15 16 4 O -0.52 -14.30 11.44 21.95 0.25 -14.05 16 5 C -0.10 -2.59 4.47 29.85 0.13 -2.46 16 6 C 0.16 4.39 0.54 3.52 0.00 4.39 16 7 C -0.18 -5.23 7.90 71.98 0.57 -4.66 16 8 N -0.66 -21.74 4.52 -470.19 -2.13 -23.87 16 9 C 0.05 1.76 4.43 86.31 0.38 2.14 16 10 C 0.23 11.55 2.99 29.85 0.09 11.64 16 11 H 0.01 0.80 8.14 -2.39 -0.02 0.79 16 12 O -0.57 -28.85 12.59 -148.98 -1.88 -30.73 16 13 C -0.58 -31.17 8.76 25.60 0.22 -30.95 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.03 1.46 5.40 84.65 0.46 1.92 16 16 N -0.90 -53.37 12.84 21.45 0.28 -53.10 16 17 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.14 -3.67 4.50 -10.80 -0.05 -3.72 16 22 C -0.17 -4.35 9.76 30.62 0.30 -4.05 16 23 C -0.18 -4.43 9.41 30.62 0.29 -4.14 16 24 H 0.06 0.93 8.13 -2.39 -0.02 0.92 16 25 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 26 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 28 H 0.11 2.77 6.43 -2.39 -0.02 2.75 16 29 H 0.05 1.52 7.35 -2.38 -0.02 1.51 16 30 H 0.08 2.28 5.52 -2.38 -0.01 2.27 16 31 H 0.05 1.42 6.44 -2.39 -0.02 1.41 16 32 H 0.34 11.73 7.41 -89.69 -0.66 11.06 16 33 H 0.03 1.03 6.25 -2.39 -0.01 1.02 16 34 H 0.07 2.68 6.50 -2.39 -0.02 2.66 16 35 H 0.35 15.98 9.04 -74.06 -0.67 15.31 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.11 2.89 6.09 -2.39 -0.01 2.87 16 38 H 0.10 2.99 6.82 -2.38 -0.02 2.98 16 39 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.18 7.18 -2.39 -0.02 2.17 16 Total: -1.00 -63.49 326.80 1.83 -61.66 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.28 Total: 39.98 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.11 Total: -16.13 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.85 Total: -76.96 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -2.17 Total: -53.38 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -63.49 1.83 -61.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931508275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.177 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds