Wall clock time and date at job start Mon Mar 30 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99792 * 2 1 4 4 C 1.52997 * 109.47124 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47099 * 65.00003 * 4 3 2 6 6 C 1.46505 * 119.99820 * 269.99647 * 5 4 3 7 7 C 1.50698 * 109.47065 * 270.00045 * 6 5 4 8 8 H 1.07994 * 120.00593 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99672 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00272 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47425 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47443 * 119.99827 * 11 9 7 14 14 H 1.48499 * 109.46787 * 239.99667 * 11 9 7 15 15 C 1.34771 * 120.00118 * 90.00066 * 5 4 3 16 16 O 1.21284 * 120.00388 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00052 * 359.97438 * 15 5 4 18 18 C 1.53005 * 109.46978 * 185.31576 * 17 15 5 19 19 C 1.52998 * 112.99998 * 65.47993 * 18 17 15 20 20 C 1.54035 * 113.92449 * 197.40926 * 18 17 15 21 21 O 1.44177 * 85.51650 * 136.81877 * 20 18 17 22 22 C 1.44181 * 93.34191 * 335.80758 * 21 20 18 23 23 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47727 * 300.00135 * 1 2 3 25 25 H 1.09004 * 109.46997 * 60.00719 * 1 2 3 26 26 H 1.09003 * 109.47237 * 59.99338 * 3 2 1 27 27 H 1.09006 * 109.46982 * 299.99581 * 3 2 1 28 28 H 1.09004 * 109.47056 * 304.99625 * 4 3 2 29 29 H 1.09002 * 109.47282 * 185.00091 * 4 3 2 30 30 H 1.08999 * 109.46842 * 30.00424 * 6 5 4 31 31 H 1.09003 * 109.46478 * 149.99989 * 6 5 4 32 32 H 0.96993 * 120.00394 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47098 * 65.31580 * 17 15 5 34 34 H 1.08998 * 109.46963 * 305.31373 * 17 15 5 35 35 H 1.09000 * 109.47349 * 292.74228 * 19 18 17 36 36 H 1.09003 * 109.47030 * 52.74088 * 19 18 17 37 37 H 1.09000 * 109.47394 * 172.74414 * 19 18 17 38 38 H 1.08996 * 113.86486 * 250.97021 * 20 18 17 39 39 H 1.09006 * 113.86418 * 22.67320 * 20 18 17 40 40 H 1.08999 * 113.86285 * 270.04910 * 22 21 20 41 41 H 1.08995 * 113.98288 * 138.34992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.1063 -0.8924 -1.3402 7 6 5.5018 -1.2979 -0.9411 8 1 6.2201 -0.5460 -0.6496 9 6 5.8615 -2.6289 -0.9480 10 7 4.9867 -3.5447 -1.3025 11 14 7.5911 -3.1316 -0.4527 12 1 8.3762 -1.9217 -0.0994 13 1 7.5258 -4.0398 0.7204 14 1 8.2463 -3.8330 -1.5858 15 6 4.2633 1.3330 -2.3199 16 8 4.6281 0.8192 -3.3562 17 6 4.1294 2.8313 -2.2282 18 6 4.3835 3.4512 -3.6037 19 6 3.3239 3.0660 -4.6380 20 6 4.6921 4.9597 -3.5617 21 8 5.7261 4.6598 -4.5207 22 6 5.8307 3.2835 -4.1038 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8507 0.5687 0.8428 29 1 3.9784 2.1767 0.0902 30 1 3.3858 -1.3630 -0.6712 31 1 3.9139 -1.2121 -2.3643 32 1 5.2396 -4.4811 -1.3071 33 1 4.8574 3.2181 -1.5152 34 1 3.1235 3.0864 -1.8949 35 1 3.3988 2.0005 -4.8555 36 1 2.3326 3.2872 -4.2423 37 1 3.4853 3.6357 -5.5531 38 1 3.8916 5.5848 -3.9572 39 1 5.0699 5.3059 -2.5996 40 1 6.5561 3.1180 -3.3073 41 1 5.9335 2.5776 -4.9279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931897574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:34 Heat of formation + Delta-G solvation = -94.540039 kcal Electronic energy + Delta-G solvation = -22152.697243 eV Core-core repulsion = 18841.437948 eV Total energy + Delta-G solvation = -3311.259295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72930 -38.85681 -37.47753 -34.85207 -33.05197 -32.48333 -29.60337 -28.46661 -26.70445 -26.41895 -25.96046 -25.44590 -22.74659 -22.47170 -19.01506 -18.21077 -16.86482 -16.44107 -16.26092 -15.89331 -15.79296 -15.58651 -15.04599 -14.82512 -14.76416 -14.18095 -13.89159 -13.41878 -13.01273 -12.66291 -12.24941 -12.21717 -11.98908 -11.87057 -11.66411 -11.57050 -11.25043 -11.16479 -10.89715 -10.80761 -10.60729 -10.41518 -10.22645 -10.10072 -9.54310 -9.52111 -9.44991 -8.78978 -8.35815 -7.60090 -5.96949 -4.01078 3.32943 3.39126 3.41636 3.45706 3.81770 3.86769 4.03422 4.37543 4.51553 4.83244 4.98621 5.17230 5.23088 5.25973 5.36537 5.40080 5.42311 5.45725 5.50578 5.55815 5.61613 5.64244 5.71360 5.78057 5.83787 5.98299 6.03106 6.15314 6.21778 6.25045 6.32578 6.51763 7.25983 7.38429 7.58250 7.64420 8.00939 8.32975 8.49914 8.97149 9.14363 9.63079 11.11076 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.006805 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.132133 B = 4113.857591 C = 5651.032771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.590 5.590 6 C 0.250 3.750 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.505 3.495 16 O -0.536 6.536 17 C -0.139 4.139 18 C -0.106 4.106 19 C -0.129 4.129 20 C 0.040 3.960 21 O -0.388 6.388 22 C 0.056 3.944 23 H 0.084 0.916 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 14.978 1.988 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.013 4.013 5 N -0.321 5.321 6 C 0.131 3.869 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.291 3.709 16 O -0.413 6.413 17 C -0.179 4.179 18 C -0.107 4.107 19 C -0.186 4.186 20 C -0.038 4.038 21 O -0.307 6.307 22 C -0.020 4.020 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.997 14.456 1.218 16.106 hybrid contribution 0.561 -0.222 0.665 0.898 sum -6.436 14.234 1.884 15.734 Atomic orbital electron populations 1.22702 0.82038 1.02633 0.99087 1.88112 1.18722 1.26892 1.95122 1.23118 0.95399 0.85474 0.99433 1.21502 0.91136 0.98945 0.89761 1.48194 1.64171 1.09927 1.09836 1.19294 0.96636 0.72184 0.98806 1.21502 0.97512 0.92185 1.45130 0.92666 1.24917 0.97295 0.96461 0.95419 1.69952 1.34219 1.00909 1.48185 0.86499 0.84679 0.78462 0.78084 1.19905 1.21039 1.20977 1.20213 0.78422 0.88105 0.84160 1.90641 1.46581 1.74902 1.29225 1.21881 1.03322 0.94847 0.97841 1.23343 0.97657 0.94207 0.95483 1.21595 0.96133 1.03720 0.97143 1.24088 0.90563 0.95901 0.93204 1.89625 1.59244 1.27313 1.54509 1.23993 0.94962 0.83105 0.99957 0.89747 0.94681 0.94615 0.93123 0.93781 0.89016 0.90169 0.93769 0.94316 0.92913 0.89266 0.89596 0.90039 0.92832 0.92329 0.89488 0.90481 0.90417 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.24 9.53 -35.23 -0.34 -6.58 16 3 C 0.04 0.60 6.21 37.16 0.23 0.83 16 4 C 0.11 1.74 5.54 -4.05 -0.02 1.72 16 5 N -0.59 -12.18 2.42 -175.06 -0.42 -12.60 16 6 C 0.25 6.59 4.98 -5.19 -0.03 6.56 16 7 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 11 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 15 C 0.50 9.90 7.33 -10.99 -0.08 9.82 16 16 O -0.54 -12.62 13.26 5.55 0.07 -12.55 16 17 C -0.14 -1.90 3.64 -27.88 -0.10 -2.00 16 18 C -0.11 -1.45 0.78 -153.43 -0.12 -1.57 16 19 C -0.13 -1.76 8.81 37.16 0.33 -1.44 16 20 C 0.04 0.46 8.34 37.61 0.31 0.77 16 21 O -0.39 -5.85 12.37 -35.23 -0.44 -6.28 16 22 C 0.06 0.87 7.18 37.61 0.27 1.14 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.56 7.22 -51.93 -0.38 0.19 16 28 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 29 H 0.08 0.96 6.59 -51.93 -0.34 0.62 16 30 H 0.04 1.22 7.11 -51.93 -0.37 0.85 16 31 H 0.04 1.16 7.42 -51.93 -0.39 0.78 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.09 1.07 7.61 -51.93 -0.39 0.68 16 34 H 0.09 0.97 6.97 -51.93 -0.36 0.61 16 35 H 0.08 1.35 6.62 -51.93 -0.34 1.01 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 40 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.10 1.62 8.10 -51.93 -0.42 1.20 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -34.13 335.23 -5.62 -39.75 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.75 Total: -1.33 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 1.48 Total: 3.72 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.31 Total: -38.86 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.70 Total: -25.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.13 -5.62 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.793 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds