Wall clock time and date at job start Mon Mar 30 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99792 * 2 1 4 4 C 1.52997 * 109.47124 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47099 * 65.00003 * 4 3 2 6 6 C 1.46505 * 119.99820 * 269.99647 * 5 4 3 7 7 C 1.50698 * 109.47065 * 270.00045 * 6 5 4 8 8 H 1.07994 * 120.00593 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99672 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00272 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47425 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47443 * 119.99827 * 11 9 7 14 14 H 1.48499 * 109.46787 * 239.99667 * 11 9 7 15 15 C 1.34771 * 120.00118 * 90.00066 * 5 4 3 16 16 O 1.21284 * 120.00388 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00052 * 359.97438 * 15 5 4 18 18 C 1.53005 * 109.46978 * 185.31576 * 17 15 5 19 19 C 1.52998 * 112.99998 * 65.47993 * 18 17 15 20 20 C 1.54035 * 113.92449 * 197.40926 * 18 17 15 21 21 O 1.44177 * 85.51650 * 136.81877 * 20 18 17 22 22 C 1.44181 * 93.34191 * 335.80758 * 21 20 18 23 23 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47727 * 300.00135 * 1 2 3 25 25 H 1.09004 * 109.46997 * 60.00719 * 1 2 3 26 26 H 1.09003 * 109.47237 * 59.99338 * 3 2 1 27 27 H 1.09006 * 109.46982 * 299.99581 * 3 2 1 28 28 H 1.09004 * 109.47056 * 304.99625 * 4 3 2 29 29 H 1.09002 * 109.47282 * 185.00091 * 4 3 2 30 30 H 1.08999 * 109.46842 * 30.00424 * 6 5 4 31 31 H 1.09003 * 109.46478 * 149.99989 * 6 5 4 32 32 H 0.96993 * 120.00394 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47098 * 65.31580 * 17 15 5 34 34 H 1.08998 * 109.46963 * 305.31373 * 17 15 5 35 35 H 1.09000 * 109.47349 * 292.74228 * 19 18 17 36 36 H 1.09003 * 109.47030 * 52.74088 * 19 18 17 37 37 H 1.09000 * 109.47394 * 172.74414 * 19 18 17 38 38 H 1.08996 * 113.86486 * 250.97021 * 20 18 17 39 39 H 1.09006 * 113.86418 * 22.67320 * 20 18 17 40 40 H 1.08999 * 113.86285 * 270.04910 * 22 21 20 41 41 H 1.08995 * 113.98288 * 138.34992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.1063 -0.8924 -1.3402 7 6 5.5018 -1.2979 -0.9411 8 1 6.2201 -0.5460 -0.6496 9 6 5.8615 -2.6289 -0.9480 10 7 4.9867 -3.5447 -1.3025 11 14 7.5911 -3.1316 -0.4527 12 1 8.3762 -1.9217 -0.0994 13 1 7.5258 -4.0398 0.7204 14 1 8.2463 -3.8330 -1.5858 15 6 4.2633 1.3330 -2.3199 16 8 4.6281 0.8192 -3.3562 17 6 4.1294 2.8313 -2.2282 18 6 4.3835 3.4512 -3.6037 19 6 3.3239 3.0660 -4.6380 20 6 4.6921 4.9597 -3.5617 21 8 5.7261 4.6598 -4.5207 22 6 5.8307 3.2835 -4.1038 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8507 0.5687 0.8428 29 1 3.9784 2.1767 0.0902 30 1 3.3858 -1.3630 -0.6712 31 1 3.9139 -1.2121 -2.3643 32 1 5.2396 -4.4811 -1.3071 33 1 4.8574 3.2181 -1.5152 34 1 3.1235 3.0864 -1.8949 35 1 3.3988 2.0005 -4.8555 36 1 2.3326 3.2872 -4.2423 37 1 3.4853 3.6357 -5.5531 38 1 3.8916 5.5848 -3.9572 39 1 5.0699 5.3059 -2.5996 40 1 6.5561 3.1180 -3.3073 41 1 5.9335 2.5776 -4.9279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931897574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:34 Heat of formation + Delta-G solvation = -119.574416 kcal Electronic energy + Delta-G solvation = -22153.782815 eV Core-core repulsion = 18841.437948 eV Total energy + Delta-G solvation = -3312.344867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87650 -40.29407 -38.68110 -36.47007 -34.82889 -34.00352 -31.09700 -29.82995 -28.25673 -27.44153 -27.06516 -26.73350 -24.58141 -23.80360 -20.34473 -19.46876 -18.61096 -18.14480 -17.53499 -17.03407 -16.94479 -16.77151 -16.53832 -16.30333 -16.06050 -15.61794 -15.31047 -14.61997 -14.45412 -14.17870 -13.70013 -13.48721 -13.32251 -13.18013 -13.01534 -12.81295 -12.78609 -12.66969 -12.54416 -12.29351 -12.15239 -11.88576 -11.68361 -11.61390 -11.33396 -10.61901 -10.59540 -10.51540 -10.34028 -9.32602 -8.17850 -6.32541 1.35841 1.38241 1.49801 1.94486 2.32725 2.48042 2.79371 3.01352 3.11638 3.26150 3.76864 3.83158 4.09551 4.19311 4.24286 4.34109 4.44079 4.44978 4.55443 4.56043 4.64045 4.64828 4.67548 4.71401 4.88005 4.90613 4.95604 5.00658 5.04842 5.18595 5.26778 5.28995 5.33150 5.40027 5.63139 5.93260 6.13335 6.38817 6.77685 6.92853 7.33488 7.60102 8.89160 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.006805 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.132133 B = 4113.857591 C = 5651.032771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.044 3.956 4 C 0.104 3.896 5 N -0.599 5.599 6 C 0.273 3.727 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.283 1.283 15 C 0.494 3.506 16 O -0.588 6.588 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.126 4.126 20 C 0.053 3.947 21 O -0.408 6.408 22 C 0.047 3.953 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.023 0.977 31 H -0.014 1.014 32 H 0.265 0.735 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 18.060 3.850 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.339 6.339 3 C -0.033 4.033 4 C -0.019 4.019 5 N -0.329 5.329 6 C 0.151 3.849 7 C -0.577 4.577 8 H 0.072 0.928 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.189 1.189 13 H -0.196 1.196 14 H -0.210 1.210 15 C 0.283 3.717 16 O -0.468 6.468 17 C -0.163 4.163 18 C -0.109 4.109 19 C -0.183 4.183 20 C -0.023 4.023 21 O -0.327 6.327 22 C -0.029 4.029 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.041 0.959 31 H 0.004 0.996 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.201 17.588 3.115 19.258 hybrid contribution 0.557 -1.175 0.056 1.301 sum -6.644 16.413 3.170 17.989 Atomic orbital electron populations 1.22838 0.80134 1.02925 1.00842 1.88055 1.21075 1.29256 1.95529 1.23224 0.93502 0.84706 1.01899 1.21883 0.93204 1.00306 0.86494 1.48167 1.64684 1.07725 1.12357 1.18567 0.95192 0.76310 0.94804 1.21812 0.98395 0.92517 1.44981 0.92780 1.25872 1.01726 0.96531 0.95278 1.70086 1.36500 1.01350 1.49156 0.85397 0.79233 0.78398 0.77941 1.18869 1.19597 1.20952 1.21341 0.76846 0.90670 0.82838 1.90629 1.48588 1.76451 1.31175 1.21893 1.06362 0.89294 0.98731 1.23378 0.95996 0.96348 0.95210 1.21538 0.97671 1.01167 0.97894 1.24330 0.90079 0.93978 0.93934 1.89608 1.60504 1.26689 1.55924 1.23909 0.96750 0.83150 0.99115 0.90423 0.91903 0.93687 0.89029 0.92538 0.90990 0.85465 0.95890 0.99554 0.92647 0.86313 0.85912 0.94017 0.90419 0.91862 0.86969 0.87623 0.90531 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.42 -13.93 9.53 -148.98 -1.42 -15.35 16 3 C 0.04 1.07 6.21 71.98 0.45 1.51 16 4 C 0.10 3.02 5.54 86.38 0.48 3.50 16 5 N -0.60 -24.84 2.42 -826.15 -2.00 -26.84 16 6 C 0.27 15.15 4.98 85.63 0.43 15.58 16 7 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.00 0.25 5.46 84.66 0.46 0.72 16 10 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 11 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 C 0.49 19.30 7.33 87.66 0.64 19.94 16 16 O -0.59 -29.03 13.26 -3.04 -0.04 -29.07 16 17 C -0.12 -2.96 3.64 29.85 0.11 -2.85 16 18 C -0.11 -2.72 0.78 -51.48 -0.04 -2.76 16 19 C -0.13 -3.31 8.81 71.98 0.63 -2.67 16 20 C 0.05 0.99 8.34 72.27 0.60 1.60 16 21 O -0.41 -11.52 12.37 -148.98 -1.84 -13.37 16 22 C 0.05 1.45 7.18 72.27 0.52 1.97 16 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.23 7.22 -2.38 -0.02 1.21 16 28 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 29 H 0.13 2.45 6.59 -2.39 -0.02 2.43 16 30 H 0.02 1.36 7.11 -2.39 -0.02 1.34 16 31 H -0.01 -0.89 7.42 -2.39 -0.02 -0.91 16 32 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.12 2.23 7.61 -2.39 -0.02 2.21 16 34 H 0.12 2.10 6.97 -2.39 -0.02 2.09 16 35 H 0.04 1.43 6.62 -2.39 -0.02 1.42 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.56 8.07 -2.39 -0.02 1.54 16 38 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 39 H 0.11 1.43 8.06 -2.38 -0.02 1.41 16 40 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 41 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -80.81 335.23 3.77 -77.03 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.00 Total: 10.58 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.77 Total: 7.03 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.71 Total: -84.87 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -3.30 Total: -57.79 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.81 3.77 -77.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931897574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.542 kcal (2) G-P(sol) polarization free energy of solvation -80.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds