Wall clock time and date at job start Mon Mar 30 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86797 * 120.00505 * 2 1 4 4 H 1.48501 * 109.47033 * 269.99904 * 3 2 1 5 5 H 1.48501 * 109.46886 * 29.99712 * 3 2 1 6 6 H 1.48493 * 109.47424 * 149.99680 * 3 2 1 7 7 C 1.40049 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00175 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99982 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99954 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99974 * 180.27699 * 11 9 7 13 13 C 1.53004 * 109.46906 * 179.72704 * 12 11 9 14 14 H 1.08992 * 109.47358 * 54.99781 * 13 12 11 15 15 C 1.52999 * 109.46665 * 294.99528 * 13 12 11 16 16 O 1.42895 * 109.47311 * 66.03570 * 15 13 12 17 17 C 1.53006 * 109.46723 * 174.99830 * 13 12 11 18 18 C 1.52993 * 109.46922 * 294.31471 * 17 13 12 19 19 C 1.53168 * 109.54746 * 294.08067 * 18 17 13 20 20 C 1.53106 * 109.15926 * 183.24503 * 19 18 17 21 21 O 1.42902 * 109.48793 * 57.47448 * 20 19 18 22 22 C 1.42900 * 114.09509 * 298.88956 * 21 20 19 23 23 C 1.53085 * 109.41747 * 61.15928 * 22 21 20 24 24 H 0.97002 * 119.99635 * 0.02562 * 1 2 3 25 25 H 0.97008 * 120.00089 * 0.02562 * 11 9 7 26 26 H 1.09000 * 109.46760 * 299.71777 * 12 11 9 27 27 H 1.08994 * 109.46993 * 59.72324 * 12 11 9 28 28 H 1.09004 * 109.46795 * 186.03680 * 15 13 12 29 29 H 1.09001 * 109.47737 * 306.02854 * 15 13 12 30 30 H 0.96701 * 114.00380 * 179.97438 * 16 15 13 31 31 H 1.09002 * 109.46999 * 54.31709 * 17 13 12 32 32 H 1.08999 * 109.46758 * 174.31371 * 17 13 12 33 33 H 1.09004 * 109.54651 * 54.26047 * 18 17 13 34 34 H 1.09006 * 109.52335 * 303.06351 * 19 18 17 35 35 H 1.08997 * 109.52509 * 63.24492 * 19 18 17 36 36 H 1.09001 * 109.40460 * 297.49006 * 20 19 18 37 37 H 1.09007 * 109.48252 * 177.50525 * 20 19 18 38 38 H 1.09003 * 109.48160 * 301.17126 * 22 21 20 39 39 H 1.09005 * 109.48962 * 181.14921 * 22 21 20 40 40 H 1.08998 * 109.52452 * 182.48381 * 23 22 21 41 41 H 1.09003 * 109.57551 * 62.32182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0868 -1.2130 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0580 -2.4804 0.0005 11 7 1.9487 -3.6477 0.0016 12 6 1.2161 -4.9165 -0.0045 13 6 2.2104 -6.0794 -0.0088 14 1 2.8938 -5.9762 0.8340 15 6 3.0061 -6.0652 -1.3155 16 8 3.8250 -4.8950 -1.3619 17 6 1.4493 -7.4014 0.1106 18 6 0.7679 -7.4758 1.4784 19 6 1.8320 -7.5441 2.5780 20 6 1.1421 -7.6999 3.9359 21 8 0.3214 -8.8697 3.9222 22 6 -0.7212 -8.8395 2.9455 23 6 -0.1062 -8.7318 1.5478 24 1 -0.4850 0.8401 -0.0004 25 1 2.9188 -3.6478 0.0027 26 1 0.5889 -4.9781 0.8848 27 1 0.5902 -4.9702 -0.8952 28 1 3.6372 -6.9525 -1.3662 29 1 2.3174 -6.0605 -2.1604 30 1 4.3590 -4.8202 -2.1646 31 1 0.6954 -7.4588 -0.6746 32 1 2.1466 -8.2327 0.0063 33 1 0.1478 -6.5915 1.6255 34 1 2.4837 -8.3999 2.4016 35 1 2.4226 -6.6280 2.5709 36 1 0.5232 -6.8239 4.1303 37 1 1.8956 -7.7935 4.7180 38 1 -1.3645 -7.9784 3.1270 39 1 -1.3103 -9.7541 3.0140 40 1 -0.9006 -8.6642 0.8045 41 1 0.5049 -9.6122 1.3488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116802202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:06 Heat of formation + Delta-G solvation = -160.515327 kcal Electronic energy + Delta-G solvation = -21623.421514 eV Core-core repulsion = 18309.301315 eV Total energy + Delta-G solvation = -3314.120198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.67990 -38.01292 -36.50583 -35.48762 -33.22480 -32.27510 -31.21673 -30.91665 -27.08104 -26.46240 -24.55655 -23.67102 -22.90771 -20.41897 -19.71724 -19.45637 -17.20326 -16.81638 -16.25898 -16.03802 -15.56723 -15.20121 -14.87173 -14.58669 -14.30951 -13.94292 -13.72223 -13.63712 -12.91911 -12.73432 -12.45471 -12.18830 -12.03379 -11.80603 -11.50045 -11.36549 -11.15675 -11.01208 -10.93616 -10.67447 -10.34833 -10.31584 -10.28838 -10.11727 -10.10260 -9.70332 -9.53206 -8.75448 -7.46709 -7.23605 -6.07617 -4.51092 3.19542 3.25950 3.29996 3.81626 4.15615 4.23136 4.61922 4.70375 4.76724 4.78131 4.94664 4.99372 5.11082 5.17498 5.33251 5.38476 5.42849 5.56979 5.58759 5.59767 5.68263 5.70911 5.79874 5.85202 5.87948 5.97058 5.99121 6.07604 6.09033 6.24800 6.35591 6.64930 6.70257 7.12509 7.54130 7.83061 8.17477 8.38049 8.50628 9.13914 9.79311 10.72952 10.94414 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.004338 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.471306 B = 6452.530642 C = 7102.099067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.087 3.913 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.554 3.446 10 O -0.589 6.589 11 N -0.757 5.757 12 C 0.143 3.857 13 C -0.103 4.103 14 H 0.082 0.918 15 C 0.086 3.914 16 O -0.560 6.560 17 C -0.100 4.100 18 C -0.094 4.094 19 C -0.151 4.151 20 C 0.059 3.941 21 O -0.387 6.387 22 C 0.059 3.941 23 C -0.149 4.149 24 H 0.266 0.734 25 H 0.390 0.610 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.375 0.625 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -16.863 1.394 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.473 6.473 11 N -0.415 5.415 12 C 0.017 3.983 13 C -0.122 4.122 14 H 0.100 0.900 15 C 0.008 3.992 16 O -0.365 6.365 17 C -0.138 4.138 18 C -0.113 4.113 19 C -0.188 4.188 20 C -0.018 4.018 21 O -0.306 6.306 22 C -0.017 4.017 23 C -0.187 4.187 24 H 0.077 0.923 25 H 0.226 0.774 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.221 0.779 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.504 -16.817 2.105 17.307 hybrid contribution 1.120 0.913 -0.891 1.698 sum 4.625 -15.905 1.214 16.608 Atomic orbital electron populations 1.70040 1.07013 1.26928 1.36135 1.25703 0.94565 1.00157 0.92732 0.86418 0.80194 0.81647 0.78718 1.19859 1.20574 1.18964 1.20903 0.93551 0.89534 1.54097 0.91573 1.18198 0.87100 0.82734 0.76214 1.90575 1.14273 1.87206 1.55254 1.46135 1.09392 1.04148 1.81843 1.20849 0.93280 0.84109 1.00028 1.21498 0.97580 0.95465 0.97640 0.89993 1.22153 0.92578 0.86884 0.97581 1.86464 1.60446 1.44194 1.45433 1.21473 0.99220 0.96146 0.96958 1.21282 0.96821 0.98489 0.94689 1.22279 0.98547 1.02954 0.95049 1.22605 0.93853 0.88046 0.97284 1.87891 1.44910 1.40830 1.56982 1.22574 0.89480 1.02008 0.87682 1.22231 1.00064 0.98595 0.97799 0.92350 0.77435 0.93573 0.94112 0.94468 0.93893 0.77857 0.91447 0.91806 0.89921 0.91325 0.90261 0.92936 0.89037 0.93039 0.89167 0.90819 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.89 11.83 55.55 0.66 -23.23 16 2 C 0.09 2.52 5.50 -17.37 -0.10 2.43 16 3 Si 0.91 20.77 29.56 -169.99 -5.02 15.74 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -16.03 9.54 -35.63 -0.34 -16.37 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.55 16.51 7.75 -12.99 -0.10 16.41 16 10 O -0.59 -19.80 15.02 5.20 0.08 -19.72 16 11 N -0.76 -17.93 5.03 -61.72 -0.31 -18.24 16 12 C 0.14 2.82 4.94 -4.04 -0.02 2.80 16 13 C -0.10 -1.46 2.17 -90.62 -0.20 -1.65 16 14 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 15 C 0.09 1.11 6.42 37.16 0.24 1.35 16 16 O -0.56 -8.06 10.93 -35.23 -0.39 -8.44 16 17 C -0.10 -1.13 4.14 -26.73 -0.11 -1.24 16 18 C -0.09 -1.10 2.15 -90.44 -0.19 -1.29 16 19 C -0.15 -1.68 5.13 -26.59 -0.14 -1.82 16 20 C 0.06 0.67 6.84 37.21 0.25 0.92 16 21 O -0.39 -4.78 10.77 -35.23 -0.38 -5.16 16 22 C 0.06 0.62 6.84 37.20 0.25 0.87 16 23 C -0.15 -1.50 5.43 -26.59 -0.14 -1.64 16 24 H 0.27 7.45 8.29 -40.82 -0.34 7.12 16 25 H 0.39 8.61 6.28 -40.82 -0.26 8.35 16 26 H 0.05 0.96 6.27 -51.93 -0.33 0.63 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.37 3.71 9.12 45.56 0.42 4.12 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.14 6.26 -51.93 -0.32 0.82 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.94 6.64 -51.93 -0.34 0.59 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -36.72 326.13 -6.83 -43.55 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.79 Total: 9.84 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.59 Total: 0.75 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.35 Total: -41.47 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.69 Total: -33.32 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.72 -6.83 -43.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116802202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.962 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds