Wall clock time and date at job start Mon Mar 30 2020 00:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86797 * 120.00505 * 2 1 4 4 H 1.48501 * 109.47033 * 269.99904 * 3 2 1 5 5 H 1.48501 * 109.46886 * 29.99712 * 3 2 1 6 6 H 1.48493 * 109.47424 * 149.99680 * 3 2 1 7 7 C 1.40049 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00175 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99982 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99954 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99974 * 180.27699 * 11 9 7 13 13 C 1.53004 * 109.46906 * 179.72704 * 12 11 9 14 14 H 1.08992 * 109.47358 * 54.99781 * 13 12 11 15 15 C 1.52999 * 109.46665 * 294.99528 * 13 12 11 16 16 O 1.42895 * 109.47311 * 66.03570 * 15 13 12 17 17 C 1.53006 * 109.46723 * 174.99830 * 13 12 11 18 18 C 1.52993 * 109.46922 * 294.31471 * 17 13 12 19 19 C 1.53168 * 109.54746 * 294.08067 * 18 17 13 20 20 C 1.53106 * 109.15926 * 183.24503 * 19 18 17 21 21 O 1.42902 * 109.48793 * 57.47448 * 20 19 18 22 22 C 1.42900 * 114.09509 * 298.88956 * 21 20 19 23 23 C 1.53085 * 109.41747 * 61.15928 * 22 21 20 24 24 H 0.97002 * 119.99635 * 0.02562 * 1 2 3 25 25 H 0.97008 * 120.00089 * 0.02562 * 11 9 7 26 26 H 1.09000 * 109.46760 * 299.71777 * 12 11 9 27 27 H 1.08994 * 109.46993 * 59.72324 * 12 11 9 28 28 H 1.09004 * 109.46795 * 186.03680 * 15 13 12 29 29 H 1.09001 * 109.47737 * 306.02854 * 15 13 12 30 30 H 0.96701 * 114.00380 * 179.97438 * 16 15 13 31 31 H 1.09002 * 109.46999 * 54.31709 * 17 13 12 32 32 H 1.08999 * 109.46758 * 174.31371 * 17 13 12 33 33 H 1.09004 * 109.54651 * 54.26047 * 18 17 13 34 34 H 1.09006 * 109.52335 * 303.06351 * 19 18 17 35 35 H 1.08997 * 109.52509 * 63.24492 * 19 18 17 36 36 H 1.09001 * 109.40460 * 297.49006 * 20 19 18 37 37 H 1.09007 * 109.48252 * 177.50525 * 20 19 18 38 38 H 1.09003 * 109.48160 * 301.17126 * 22 21 20 39 39 H 1.09005 * 109.48962 * 181.14921 * 22 21 20 40 40 H 1.08998 * 109.52452 * 182.48381 * 23 22 21 41 41 H 1.09003 * 109.57551 * 62.32182 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5383 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0868 -1.2130 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0580 -2.4804 0.0005 11 7 1.9487 -3.6477 0.0016 12 6 1.2161 -4.9165 -0.0045 13 6 2.2104 -6.0794 -0.0088 14 1 2.8938 -5.9762 0.8340 15 6 3.0061 -6.0652 -1.3155 16 8 3.8250 -4.8950 -1.3619 17 6 1.4493 -7.4014 0.1106 18 6 0.7679 -7.4758 1.4784 19 6 1.8320 -7.5441 2.5780 20 6 1.1421 -7.6999 3.9359 21 8 0.3214 -8.8697 3.9222 22 6 -0.7212 -8.8395 2.9455 23 6 -0.1062 -8.7318 1.5478 24 1 -0.4850 0.8401 -0.0004 25 1 2.9188 -3.6478 0.0027 26 1 0.5889 -4.9781 0.8848 27 1 0.5902 -4.9702 -0.8952 28 1 3.6372 -6.9525 -1.3662 29 1 2.3174 -6.0605 -2.1604 30 1 4.3590 -4.8202 -2.1646 31 1 0.6954 -7.4588 -0.6746 32 1 2.1466 -8.2327 0.0063 33 1 0.1478 -6.5915 1.6255 34 1 2.4837 -8.3999 2.4016 35 1 2.4226 -6.6280 2.5709 36 1 0.5232 -6.8239 4.1303 37 1 1.8956 -7.7935 4.7180 38 1 -1.3645 -7.9784 3.1270 39 1 -1.3103 -9.7541 3.0140 40 1 -0.9006 -8.6642 0.8045 41 1 0.5049 -9.6122 1.3488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116802202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:05 Heat of formation + Delta-G solvation = -189.899405 kcal Electronic energy + Delta-G solvation = -21624.695703 eV Core-core repulsion = 18309.301315 eV Total energy + Delta-G solvation = -3315.394387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66105 -39.54946 -38.26135 -36.52837 -34.96529 -34.33751 -32.55046 -31.97405 -28.86555 -27.74408 -26.23998 -24.57092 -23.89179 -21.67016 -21.48707 -20.73969 -19.01732 -18.12050 -17.39551 -17.17690 -16.97685 -16.83158 -16.06462 -15.80183 -15.66028 -15.41646 -15.11542 -14.78734 -14.55573 -14.24404 -13.67058 -13.43455 -13.32311 -13.11536 -12.98428 -12.74036 -12.71345 -12.57850 -12.23976 -12.22336 -12.01290 -11.80221 -11.39426 -11.23579 -11.14423 -10.91556 -10.76794 -10.44325 -9.81909 -9.31977 -8.26652 -6.82151 1.39266 1.41666 1.56851 2.26247 2.49988 2.95860 3.08830 3.42222 3.65143 3.73974 3.84121 3.90825 3.99219 4.09954 4.25184 4.29385 4.39427 4.45655 4.51545 4.61696 4.66732 4.71210 4.75960 4.81261 4.84321 4.89316 5.01156 5.06330 5.10424 5.16578 5.19311 5.33325 5.40204 5.48299 5.94457 6.24318 6.32765 6.42529 6.88969 7.01899 7.71200 8.55017 8.71895 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.004338 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.471306 B = 6452.530642 C = 7102.099067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.534 3.466 10 O -0.641 6.641 11 N -0.743 5.743 12 C 0.143 3.857 13 C -0.091 4.091 14 H 0.082 0.918 15 C 0.085 3.915 16 O -0.588 6.588 17 C -0.091 4.091 18 C -0.097 4.097 19 C -0.146 4.146 20 C 0.056 3.944 21 O -0.399 6.399 22 C 0.053 3.947 23 C -0.143 4.143 24 H 0.273 0.727 25 H 0.400 0.600 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.393 0.607 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.106 0.894 38 H 0.041 0.959 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.060 -17.707 0.998 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.610 4.610 8 H 0.101 0.899 9 C 0.338 3.662 10 O -0.529 6.529 11 N -0.400 5.400 12 C 0.019 3.981 13 C -0.110 4.110 14 H 0.101 0.899 15 C 0.008 3.992 16 O -0.396 6.396 17 C -0.129 4.129 18 C -0.116 4.116 19 C -0.183 4.183 20 C -0.021 4.021 21 O -0.319 6.319 22 C -0.023 4.023 23 C -0.180 4.180 24 H 0.083 0.917 25 H 0.237 0.763 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.243 0.757 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.789 -17.715 1.695 18.714 hybrid contribution 0.392 1.117 -0.763 1.409 sum 6.181 -16.598 0.932 17.736 Atomic orbital electron populations 1.70210 1.09565 1.28774 1.36930 1.26997 0.95530 1.04962 0.91199 0.85012 0.78728 0.74989 0.79473 1.18478 1.19688 1.17300 1.21418 0.94525 0.90331 1.54752 0.89931 1.18649 0.86772 0.84753 0.76072 1.90524 1.16350 1.88300 1.57720 1.45878 1.09833 1.04212 1.80063 1.20995 0.94354 0.84624 0.98174 1.21441 0.96400 0.94268 0.98876 0.89931 1.22222 0.92911 0.87918 0.96194 1.86378 1.61026 1.45185 1.47040 1.21447 0.99573 0.95259 0.96641 1.21263 0.96938 0.98079 0.95275 1.22231 0.98367 1.03061 0.94672 1.22666 0.93960 0.87411 0.98048 1.87872 1.45328 1.40969 1.57684 1.22734 0.89246 1.02646 0.87703 1.22186 1.00148 0.98043 0.97642 0.91689 0.76273 0.95369 0.96127 0.90562 0.94278 0.75662 0.91228 0.88628 0.93208 0.89696 0.91267 0.94450 0.87554 0.94110 0.87101 0.90080 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.43 11.83 21.84 0.26 -52.17 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 42.44 29.56 68.60 2.03 44.47 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 7 C -0.57 -34.32 9.54 24.83 0.24 -34.09 16 8 H 0.08 4.50 7.85 -2.91 -0.02 4.47 16 9 C 0.53 32.97 7.75 86.36 0.67 33.64 16 10 O -0.64 -45.22 15.02 -4.31 -0.06 -45.29 16 11 N -0.74 -36.15 5.03 -467.40 -2.35 -38.50 16 12 C 0.14 5.85 4.94 86.38 0.43 6.28 16 13 C -0.09 -2.48 2.17 -10.79 -0.02 -2.50 16 14 H 0.08 2.28 6.43 -2.39 -0.02 2.26 16 15 C 0.09 2.00 6.42 71.98 0.46 2.46 16 16 O -0.59 -15.96 10.93 -148.98 -1.63 -17.59 16 17 C -0.09 -1.89 4.14 30.59 0.13 -1.76 16 18 C -0.10 -2.19 2.15 -10.68 -0.02 -2.21 16 19 C -0.15 -3.10 5.13 30.69 0.16 -2.94 16 20 C 0.06 1.24 6.84 72.02 0.49 1.73 16 21 O -0.40 -9.48 10.77 -148.98 -1.60 -11.08 16 22 C 0.05 1.06 6.84 72.01 0.49 1.56 16 23 C -0.14 -2.63 5.43 30.68 0.17 -2.47 16 24 H 0.27 15.67 8.29 -92.71 -0.77 14.90 16 25 H 0.40 17.75 6.28 -92.70 -0.58 17.17 16 26 H 0.03 1.25 6.27 -2.39 -0.01 1.23 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.39 7.04 9.12 -74.06 -0.68 6.36 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.45 6.26 -2.38 -0.01 1.44 16 34 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.07 1.60 6.64 -2.39 -0.02 1.59 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -82.76 326.13 0.07 -82.69 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.22 Total: 35.71 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 3.65 Total: 1.76 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.09 Total: -90.67 kcal Atomic # 8 Polarization: -70.66 SS G_CDS: -3.30 Total: -73.96 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -82.76 0.07 -82.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116802202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.213 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds