Wall clock time and date at job start Mon Mar 30 2020 00:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47342 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99736 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.47423 * 125.64884 * 359.69397 * 15 13 12 17 17 C 1.54690 * 104.94202 * 204.07160 * 16 15 13 18 18 H 1.09003 * 110.84481 * 81.33415 * 17 16 15 19 19 O 1.42897 * 111.10127 * 205.10808 * 17 16 15 20 20 C 1.55158 * 101.67780 * 323.28057 * 17 16 15 21 21 C 1.47025 * 125.64628 * 180.02562 * 15 13 12 22 22 H 1.08999 * 109.88398 * 59.33210 * 21 15 13 23 23 C 1.53005 * 109.87961 * 298.32207 * 21 15 13 24 24 O 1.42896 * 109.46878 * 294.99948 * 23 21 15 25 25 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 27 27 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 28 28 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 29 29 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 30 30 H 1.09002 * 109.46838 * 299.99316 * 11 10 9 31 31 H 1.09001 * 109.47142 * 59.99766 * 11 10 9 32 32 H 1.09002 * 109.47045 * 299.99833 * 12 11 10 33 33 H 1.09001 * 109.47375 * 59.99908 * 12 11 10 34 34 H 1.08999 * 110.36554 * 323.00882 * 16 15 13 35 35 H 1.09001 * 110.36049 * 85.32177 * 16 15 13 36 36 H 0.96704 * 114.00149 * 292.36771 * 19 17 16 37 37 H 1.08997 * 110.71637 * 276.97453 * 20 17 16 38 38 H 1.08994 * 110.71933 * 153.69731 * 20 17 16 39 39 H 1.08991 * 109.47112 * 55.00327 * 23 21 15 40 40 H 1.09000 * 109.46739 * 175.00169 * 23 21 15 41 41 H 0.96700 * 113.99852 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0031 13 6 1.7212 -7.4551 0.0031 14 8 0.5084 -7.4551 0.0012 15 7 2.3951 -8.6223 0.0042 16 6 3.8622 -8.7674 -0.0010 17 6 4.1225 -10.1665 -0.6073 18 1 4.0734 -10.1329 -1.6957 19 8 5.3775 -10.6914 -0.1698 20 6 2.9423 -10.9867 -0.0226 21 6 1.7889 -9.9617 0.0038 22 1 1.1607 -10.0841 -0.8786 23 6 0.9509 -10.1540 1.2695 24 8 1.8056 -10.1312 2.4144 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8896 28 1 2.8727 -3.6047 -0.8877 29 1 2.8713 -3.6038 0.8923 30 1 0.8528 -5.0447 0.8906 31 1 0.8546 -5.0450 -0.8895 32 1 3.1026 -6.0925 -0.8860 33 1 3.0999 -6.0919 0.8940 34 1 4.3176 -7.9944 -0.6201 35 1 4.2517 -8.7186 1.0158 36 1 6.1448 -10.2111 -0.5099 37 1 3.1746 -11.3322 0.9848 38 1 2.6969 -11.8265 -0.6726 39 1 0.2191 -9.3500 1.3462 40 1 0.4341 -11.1124 1.2209 41 1 1.3409 -10.2472 3.2545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117671756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:00 Heat of formation + Delta-G solvation = -157.810987 kcal Electronic energy + Delta-G solvation = -20994.077876 eV Core-core repulsion = 17680.074947 eV Total energy + Delta-G solvation = -3314.002929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56424 -38.33776 -37.00429 -35.55762 -35.05243 -32.88770 -31.60886 -29.85691 -29.28679 -25.82654 -25.21498 -23.07050 -22.10813 -21.09689 -20.19872 -19.14323 -18.05124 -17.75084 -16.86469 -16.62199 -16.20531 -15.71828 -15.00668 -14.71988 -14.32758 -14.01927 -13.80861 -13.68328 -13.21179 -13.10801 -13.08093 -12.72064 -12.31033 -12.26602 -11.89849 -11.46324 -11.14868 -11.03484 -10.93218 -10.66344 -10.56958 -10.54724 -10.36429 -10.08629 -9.79585 -9.73800 -9.48785 -8.83724 -8.45702 -8.26552 -6.29990 -3.98536 2.63341 2.70328 3.46405 3.48955 3.67722 3.71161 3.86417 4.15191 4.31078 4.59030 4.59719 4.71000 4.78805 4.86458 5.09612 5.17098 5.23299 5.24208 5.32578 5.46073 5.47478 5.52684 5.53777 5.76378 5.86209 6.04622 6.08656 6.22717 6.44077 6.71937 6.88006 7.05076 7.17184 7.33388 7.37666 7.50628 7.63609 8.14618 8.29425 8.53119 8.95288 9.74231 11.10782 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.003076 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.366531 B = 9099.705214 C = 9631.409351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.103 4.103 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.532 3.468 14 O -0.535 6.535 15 N -0.612 5.612 16 C 0.073 3.927 17 C 0.091 3.909 18 H 0.074 0.926 19 O -0.554 6.554 20 C -0.118 4.118 21 C 0.140 3.860 22 H 0.090 0.910 23 C 0.062 3.938 24 O -0.567 6.567 25 H 0.269 0.731 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.382 0.618 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.662 -24.985 -0.070 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.030 4.030 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.323 3.677 14 O -0.412 6.412 15 N -0.349 5.349 16 C -0.051 4.051 17 C 0.032 3.968 18 H 0.092 0.908 19 O -0.359 6.359 20 C -0.156 4.156 21 C 0.036 3.964 22 H 0.108 0.892 23 C -0.017 4.017 24 O -0.372 6.372 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.829 -23.584 -0.227 24.851 hybrid contribution 0.172 -1.410 0.121 1.425 sum 8.002 -24.994 -0.106 26.244 Atomic orbital electron populations 1.70767 1.06896 1.30662 1.46777 1.25868 0.96599 1.02749 0.93921 0.83547 0.74867 0.75392 0.76431 1.21502 1.21487 1.20795 1.22086 0.94222 0.92194 1.55551 0.93418 1.19221 0.94695 0.93090 0.96000 1.21519 0.98806 0.93435 1.00308 1.21472 0.97075 0.92778 1.02848 1.21765 1.00001 0.91637 1.03891 1.20769 0.87876 0.84291 0.74811 1.90685 1.13959 1.87014 1.49503 1.48383 1.06760 1.05105 1.74621 1.22943 0.81540 0.98185 1.02395 1.22856 0.84666 0.92025 0.97302 0.90836 1.86539 1.15102 1.58418 1.75844 1.22626 0.92049 0.96931 1.03965 1.21654 0.95188 0.82504 0.97040 0.89249 1.22513 0.92617 1.00601 0.85979 1.86455 1.37585 1.96595 1.16547 0.92047 0.97512 0.97505 0.93319 0.93283 0.91864 0.91838 0.89259 0.89130 0.90241 0.90129 0.77021 0.88184 0.89782 0.91687 0.92920 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.07 13.65 55.43 0.76 -28.31 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.60 -17.80 9.11 -34.44 -0.31 -18.11 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 10 C -0.10 -2.19 5.15 -26.73 -0.14 -2.32 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.13 -1.89 4.71 -27.89 -0.13 -2.02 16 13 C 0.53 7.91 7.63 -10.99 -0.08 7.83 16 14 O -0.54 -9.81 14.95 5.56 0.08 -9.73 16 15 N -0.61 -7.14 3.02 -163.15 -0.49 -7.63 16 16 C 0.07 0.65 6.42 -2.65 -0.02 0.63 16 17 C 0.09 0.69 4.41 -24.70 -0.11 0.58 16 18 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 19 O -0.55 -4.12 13.47 -35.23 -0.47 -4.59 16 20 C -0.12 -0.97 6.10 -24.90 -0.15 -1.12 16 21 C 0.14 1.41 3.26 -66.95 -0.22 1.19 16 22 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.06 0.62 6.70 37.16 0.25 0.87 16 24 O -0.57 -5.72 12.41 -35.23 -0.44 -6.16 16 25 H 0.27 8.56 7.22 -40.82 -0.29 8.27 16 26 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 27 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.09 1.09 7.84 -51.93 -0.41 0.69 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.58 7.48 -51.93 -0.39 0.19 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.38 1.19 9.12 45.56 0.42 1.60 16 37 H 0.10 0.97 6.95 -51.93 -0.36 0.60 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.82 6.72 -51.93 -0.35 0.47 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.38 2.35 9.12 45.56 0.42 2.76 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -36.96 336.02 -7.06 -44.02 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.23 Total: 0.69 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.25 Total: -14.17 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.26 Total: -35.94 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.83 Total: -20.48 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.96 -7.06 -44.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117671756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.788 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds