Wall clock time and date at job start Mon Mar 30 2020 00:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47342 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99736 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.47423 * 125.64884 * 359.69397 * 15 13 12 17 17 C 1.54690 * 104.94202 * 204.07160 * 16 15 13 18 18 H 1.09003 * 110.84481 * 81.33415 * 17 16 15 19 19 O 1.42897 * 111.10127 * 205.10808 * 17 16 15 20 20 C 1.55158 * 101.67780 * 323.28057 * 17 16 15 21 21 C 1.47025 * 125.64628 * 180.02562 * 15 13 12 22 22 H 1.08999 * 109.88398 * 59.33210 * 21 15 13 23 23 C 1.53005 * 109.87961 * 298.32207 * 21 15 13 24 24 O 1.42896 * 109.46878 * 294.99948 * 23 21 15 25 25 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 27 27 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 28 28 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 29 29 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 30 30 H 1.09002 * 109.46838 * 299.99316 * 11 10 9 31 31 H 1.09001 * 109.47142 * 59.99766 * 11 10 9 32 32 H 1.09002 * 109.47045 * 299.99833 * 12 11 10 33 33 H 1.09001 * 109.47375 * 59.99908 * 12 11 10 34 34 H 1.08999 * 110.36554 * 323.00882 * 16 15 13 35 35 H 1.09001 * 110.36049 * 85.32177 * 16 15 13 36 36 H 0.96704 * 114.00149 * 292.36771 * 19 17 16 37 37 H 1.08997 * 110.71637 * 276.97453 * 20 17 16 38 38 H 1.08994 * 110.71933 * 153.69731 * 20 17 16 39 39 H 1.08991 * 109.47112 * 55.00327 * 23 21 15 40 40 H 1.09000 * 109.46739 * 175.00169 * 23 21 15 41 41 H 0.96700 * 113.99852 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0031 13 6 1.7212 -7.4551 0.0031 14 8 0.5084 -7.4551 0.0012 15 7 2.3951 -8.6223 0.0042 16 6 3.8622 -8.7674 -0.0010 17 6 4.1225 -10.1665 -0.6073 18 1 4.0734 -10.1329 -1.6957 19 8 5.3775 -10.6914 -0.1698 20 6 2.9423 -10.9867 -0.0226 21 6 1.7889 -9.9617 0.0038 22 1 1.1607 -10.0841 -0.8786 23 6 0.9509 -10.1540 1.2695 24 8 1.8056 -10.1312 2.4144 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8896 28 1 2.8727 -3.6047 -0.8877 29 1 2.8713 -3.6038 0.8923 30 1 0.8528 -5.0447 0.8906 31 1 0.8546 -5.0450 -0.8895 32 1 3.1026 -6.0925 -0.8860 33 1 3.0999 -6.0919 0.8940 34 1 4.3176 -7.9944 -0.6201 35 1 4.2517 -8.7186 1.0158 36 1 6.1448 -10.2111 -0.5099 37 1 3.1746 -11.3322 0.9848 38 1 2.6969 -11.8265 -0.6726 39 1 0.2191 -9.3500 1.3462 40 1 0.4341 -11.1124 1.2209 41 1 1.3409 -10.2472 3.2545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117671756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:00 Heat of formation + Delta-G solvation = -187.733741 kcal Electronic energy + Delta-G solvation = -20995.375424 eV Core-core repulsion = 17680.074947 eV Total energy + Delta-G solvation = -3315.300477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48302 -39.28858 -37.70634 -36.90918 -36.27275 -34.82489 -32.65891 -30.95740 -30.52988 -27.22976 -26.39340 -24.67320 -23.23212 -22.22737 -21.63423 -20.10398 -18.85034 -18.82625 -18.40810 -17.81595 -17.19231 -16.84364 -15.95679 -15.69744 -15.64235 -15.35290 -15.10766 -14.95040 -14.56061 -14.17773 -14.12270 -13.82091 -13.72074 -13.62694 -12.91095 -12.69903 -12.57166 -12.38992 -12.24749 -12.15523 -11.95475 -11.74452 -11.61064 -11.51822 -11.28750 -11.08712 -10.74837 -10.58516 -10.55123 -9.76353 -8.70300 -6.40949 1.52281 1.52449 1.62115 1.80053 1.81242 2.57979 3.09318 3.15263 3.19576 3.50266 3.60685 3.78766 3.90135 3.96544 4.00213 4.08135 4.20474 4.39763 4.43540 4.48876 4.52195 4.59545 4.65529 4.72052 4.76969 4.83184 4.89851 5.00893 5.08544 5.17617 5.20993 5.30499 5.46700 5.54150 5.99370 6.17893 6.37371 6.55437 6.75443 6.87048 7.06376 7.43294 8.70157 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.003076 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.366531 B = 9099.705214 C = 9631.409351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.046 4.046 3 Si 1.122 2.878 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.285 1.285 7 C -0.619 4.619 8 H 0.057 0.943 9 C 0.003 3.997 10 C -0.089 4.089 11 C -0.094 4.094 12 C -0.123 4.123 13 C 0.527 3.473 14 O -0.582 6.582 15 N -0.607 5.607 16 C 0.068 3.932 17 C 0.100 3.900 18 H 0.092 0.908 19 O -0.567 6.567 20 C -0.112 4.112 21 C 0.130 3.870 22 H 0.092 0.908 23 C 0.064 3.936 24 O -0.579 6.579 25 H 0.253 0.747 26 H -0.019 1.019 27 H -0.017 1.017 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.529 -25.858 -0.583 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.942 3.058 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.211 1.211 7 C -0.657 4.657 8 H 0.076 0.924 9 C -0.034 4.034 10 C -0.127 4.127 11 C -0.132 4.132 12 C -0.162 4.162 13 C 0.318 3.682 14 O -0.463 6.463 15 N -0.342 5.342 16 C -0.055 4.055 17 C 0.040 3.960 18 H 0.110 0.890 19 O -0.375 6.375 20 C -0.150 4.150 21 C 0.027 3.973 22 H 0.110 0.890 23 C -0.015 4.015 24 O -0.387 6.387 25 H 0.062 0.938 26 H -0.001 1.001 27 H 0.001 0.999 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 10.752 -24.516 -0.732 26.780 hybrid contribution -0.719 -1.218 0.316 1.449 sum 10.034 -25.734 -0.416 27.624 Atomic orbital electron populations 1.70917 1.08171 1.29719 1.49035 1.27627 0.96601 1.07315 0.92665 0.82897 0.74061 0.70587 0.78247 1.19009 1.19111 1.21061 1.22555 0.94960 0.93308 1.54887 0.92434 1.19225 0.95343 0.95175 0.93634 1.21339 0.97606 0.92381 1.01346 1.21244 0.97433 0.93416 1.01111 1.21630 0.98928 0.89537 1.06134 1.20802 0.87337 0.85368 0.74717 1.90671 1.15859 1.87744 1.51978 1.48372 1.08217 1.04862 1.72721 1.23174 0.79567 1.00068 1.02695 1.22798 0.84579 0.90588 0.98034 0.88980 1.86506 1.15744 1.58938 1.76322 1.22588 0.91641 0.96960 1.03789 1.21881 0.96146 0.82197 0.97112 0.89011 1.22454 0.92132 1.00676 0.86208 1.86411 1.38225 1.96644 1.17429 0.93814 1.00074 0.99866 0.91942 0.92292 0.93949 0.93455 0.86401 0.87308 0.88123 0.90832 0.74824 0.89553 0.87712 0.94869 0.90436 0.75757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.19 13.65 21.45 0.29 -60.90 16 2 C -0.05 -2.75 5.46 84.66 0.46 -2.28 16 3 Si 1.12 51.17 29.90 68.60 2.05 53.22 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.62 -36.68 9.11 25.60 0.23 -36.44 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.00 0.18 4.28 29.85 0.13 0.31 16 10 C -0.09 -3.74 5.15 30.60 0.16 -3.58 16 11 C -0.09 -3.48 4.50 30.59 0.14 -3.34 16 12 C -0.12 -3.28 4.71 29.85 0.14 -3.14 16 13 C 0.53 15.39 7.63 87.66 0.67 16.06 16 14 O -0.58 -21.99 14.95 -3.03 -0.05 -22.04 16 15 N -0.61 -13.29 3.02 -788.48 -2.38 -15.67 16 16 C 0.07 1.02 6.42 86.78 0.56 1.57 16 17 C 0.10 1.20 4.41 31.91 0.14 1.34 16 18 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 19 O -0.57 -6.69 13.47 -148.98 -2.01 -8.70 16 20 C -0.11 -1.58 6.10 31.78 0.19 -1.39 16 21 C 0.13 2.46 3.26 45.34 0.15 2.61 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 C 0.06 1.26 6.70 71.98 0.48 1.75 16 24 O -0.58 -11.29 12.41 -148.98 -1.85 -13.14 16 25 H 0.25 16.81 7.22 -92.70 -0.67 16.14 16 26 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 27 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 32 H 0.12 2.49 7.84 -2.39 -0.02 2.47 16 33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.10 1.09 7.48 -2.39 -0.02 1.07 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.40 1.16 9.12 -74.05 -0.68 0.49 16 37 H 0.09 1.50 6.95 -2.39 -0.02 1.49 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.03 0.87 6.72 -2.39 -0.02 0.86 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.39 4.67 9.12 -74.06 -0.68 4.00 16 Total: -1.00 -81.96 336.02 -0.71 -82.67 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.22 Total: 11.09 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.45 Total: -26.54 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -2.09 Total: -76.57 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -3.90 Total: -43.87 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -81.96 -0.71 -82.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117671756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.061 kcal (2) G-P(sol) polarization free energy of solvation -81.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds