Wall clock time and date at job start Mon Mar 30 2020 00:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48502 * 109.47014 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99790 * 3 2 1 6 6 H 1.48497 * 109.46899 * 149.99929 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 H 1.09006 * 109.46796 * 55.00369 * 15 14 13 17 17 C 1.52999 * 109.47131 * 295.00471 * 15 14 13 18 18 O 1.42900 * 109.47367 * 64.99808 * 17 15 14 19 19 C 1.52999 * 109.47469 * 175.00230 * 15 14 13 20 20 H 1.09000 * 110.45765 * 57.39350 * 19 15 14 21 21 C 1.54506 * 110.51464 * 180.02562 * 19 15 14 22 22 C 1.54477 * 104.06722 * 118.64076 * 21 19 15 23 23 O 1.44427 * 104.79909 * 23.98146 * 22 21 19 24 24 C 1.44426 * 105.27726 * 319.48615 * 23 22 21 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 31 31 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 32 32 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 33 33 H 1.09009 * 109.47057 * 184.99574 * 17 15 14 34 34 H 1.08998 * 109.47193 * 304.99515 * 17 15 14 35 35 H 0.96698 * 114.00343 * 179.97438 * 18 17 15 36 36 H 1.08995 * 110.51153 * 237.29571 * 21 19 15 37 37 H 1.09001 * 110.50876 * 359.97438 * 21 19 15 38 38 H 1.08999 * 110.37308 * 142.80992 * 22 21 19 39 39 H 1.09000 * 110.37407 * 265.04124 * 22 21 19 40 40 H 1.09000 * 110.36957 * 281.68482 * 24 23 22 41 41 H 1.08997 * 110.37266 * 159.34258 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4334 -7.4030 -0.0066 15 6 2.4276 -8.5659 -0.0118 16 1 3.1123 -8.4623 0.8300 17 6 3.2215 -8.5523 -1.3197 18 8 4.0221 -7.3702 -1.3787 19 6 1.6669 -9.8879 0.1093 20 1 0.9438 -9.9869 -0.7003 21 6 2.6496 -11.0802 0.1071 22 6 2.4237 -11.7555 1.4780 23 8 1.0855 -11.3716 1.8623 24 6 0.9635 -9.9838 1.4814 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 3.1358 -6.1343 -0.0032 31 1 0.8077 -7.4644 0.8838 32 1 0.8057 -7.4571 -0.8961 33 1 3.8662 -9.4303 -1.3625 34 1 2.5317 -8.5665 -2.1635 35 1 4.5540 -7.2950 -2.1827 36 1 2.4112 -11.7700 -0.7024 37 1 3.6773 -10.7279 0.0192 38 1 2.4953 -12.8390 1.3836 39 1 3.1488 -11.3898 2.2051 40 1 1.4634 -9.3451 2.2095 41 1 -0.0866 -9.7065 1.3896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117691566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:10 Heat of formation + Delta-G solvation = -154.482171 kcal Electronic energy + Delta-G solvation = -20996.601106 eV Core-core repulsion = 17682.742525 eV Total energy + Delta-G solvation = -3313.858581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24330 -38.93373 -37.48014 -35.08845 -33.39780 -33.26748 -31.03161 -30.32125 -28.54716 -26.52339 -24.97696 -23.10786 -22.40314 -21.21264 -20.48773 -19.30966 -17.71613 -17.03314 -16.63969 -16.11982 -15.85874 -15.52399 -15.32363 -15.07491 -14.62485 -14.37668 -14.28885 -13.75449 -13.10945 -13.02016 -12.93544 -12.32356 -12.10463 -12.04556 -11.79482 -11.67789 -11.23703 -11.08704 -11.04335 -10.89306 -10.82906 -10.55076 -10.20825 -10.11992 -9.87197 -9.58199 -9.08992 -8.89558 -8.56286 -8.26657 -5.91176 -3.95211 3.36216 3.40399 3.42055 3.44744 3.48319 3.68714 3.83774 4.21953 4.47209 4.50381 4.55707 4.58191 4.77513 4.88694 4.89680 5.03278 5.19233 5.24549 5.31695 5.37704 5.42991 5.43514 5.50467 5.55516 5.67245 5.73825 5.92095 6.03837 6.34654 6.37504 6.44261 6.94299 7.01812 7.35306 7.80464 7.94258 8.13663 8.17642 8.45583 8.96309 9.14415 9.67905 11.19852 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037892 B = 0.003116 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.762766 B = 8984.496020 C = 9417.708525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.507 3.493 12 O -0.544 6.544 13 N -0.732 5.732 14 C 0.127 3.873 15 C -0.093 4.093 16 H 0.087 0.913 17 C 0.081 3.919 18 O -0.569 6.569 19 C -0.112 4.112 20 H 0.090 0.910 21 C -0.154 4.154 22 C 0.043 3.957 23 O -0.375 6.375 24 C 0.048 3.952 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.406 0.594 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.383 0.617 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -24.685 -1.507 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.295 3.705 12 O -0.420 6.420 13 N -0.389 5.389 14 C 0.002 3.998 15 C -0.111 4.111 16 H 0.105 0.895 17 C 0.003 3.997 18 O -0.375 6.375 19 C -0.132 4.132 20 H 0.109 0.891 21 C -0.191 4.191 22 C -0.034 4.034 23 O -0.294 6.294 24 C -0.028 4.028 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.244 0.756 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.231 0.769 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.882 -24.591 -0.820 25.836 hybrid contribution 1.336 0.877 -0.748 1.765 sum 9.218 -23.713 -1.568 25.490 Atomic orbital electron populations 1.70004 1.06045 1.26490 1.50397 1.25030 0.94823 0.99195 0.95411 0.86595 0.79779 0.83570 0.78016 1.20716 1.21256 1.19900 1.21246 0.92934 0.91081 1.51098 0.92633 1.18890 0.93209 0.89419 0.98529 1.21820 1.00594 0.92074 1.02339 1.21529 0.88556 0.85865 0.74542 1.90651 1.14588 1.87850 1.48924 1.46245 1.10862 1.04741 1.77090 1.21185 0.93795 0.82901 1.01908 1.21471 0.97149 0.94002 0.98513 0.89468 1.22257 0.93194 0.87173 0.97067 1.86313 1.61713 1.43154 1.46367 1.22449 0.97678 0.93403 0.99637 0.89121 1.23089 1.00231 0.97152 0.98673 1.23415 0.84991 1.00387 0.94563 1.89147 1.31050 1.26157 1.83054 1.23555 1.01980 0.83435 0.93868 0.93009 0.95919 0.95882 0.90499 0.90369 0.75572 0.91918 0.92092 0.93346 0.93357 0.76920 0.90401 0.90017 0.89170 0.92199 0.91646 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.98 13.29 55.43 0.74 -27.24 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.75 5.64 -27.88 -0.16 -2.91 16 11 C 0.51 10.36 7.83 -10.98 -0.09 10.28 16 12 O -0.54 -13.43 15.98 5.55 0.09 -13.34 16 13 N -0.73 -11.14 5.01 -60.29 -0.30 -11.44 16 14 C 0.13 1.61 4.97 -4.04 -0.02 1.59 16 15 C -0.09 -0.80 1.62 -90.62 -0.15 -0.94 16 16 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 17 C 0.08 0.60 6.25 37.16 0.23 0.84 16 18 O -0.57 -4.81 10.88 -35.23 -0.38 -5.20 16 19 C -0.11 -0.84 2.68 -89.05 -0.24 -1.08 16 20 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 21 C -0.15 -0.92 6.13 -25.17 -0.15 -1.07 16 22 C 0.04 0.30 7.63 37.93 0.29 0.59 16 23 O -0.38 -3.83 11.65 -35.23 -0.41 -4.24 16 24 C 0.05 0.43 6.18 37.94 0.23 0.67 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.41 5.45 6.29 -40.82 -0.26 5.19 16 31 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.27 6.38 -51.92 -0.33 -0.06 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.38 1.79 9.12 45.56 0.42 2.20 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.41 6.46 -51.93 -0.34 0.08 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.58 7.83 -51.93 -0.41 0.18 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -36.34 332.42 -6.76 -43.10 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.90 Total: 1.49 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.58 Total: -5.14 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.43 Total: -38.68 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.71 Total: -22.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.34 -6.76 -43.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117691566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.385 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds