Wall clock time and date at job start Mon Mar 30 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48502 * 109.47014 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99790 * 3 2 1 6 6 H 1.48497 * 109.46899 * 149.99929 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 H 1.09006 * 109.46796 * 55.00369 * 15 14 13 17 17 C 1.52999 * 109.47131 * 295.00471 * 15 14 13 18 18 O 1.42900 * 109.47367 * 64.99808 * 17 15 14 19 19 C 1.52999 * 109.47469 * 175.00230 * 15 14 13 20 20 H 1.09000 * 110.45765 * 57.39350 * 19 15 14 21 21 C 1.54506 * 110.51464 * 180.02562 * 19 15 14 22 22 C 1.54477 * 104.06722 * 118.64076 * 21 19 15 23 23 O 1.44427 * 104.79909 * 23.98146 * 22 21 19 24 24 C 1.44426 * 105.27726 * 319.48615 * 23 22 21 25 25 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 27 27 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 30 30 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 31 31 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 32 32 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 33 33 H 1.09009 * 109.47057 * 184.99574 * 17 15 14 34 34 H 1.08998 * 109.47193 * 304.99515 * 17 15 14 35 35 H 0.96698 * 114.00343 * 179.97438 * 18 17 15 36 36 H 1.08995 * 110.51153 * 237.29571 * 21 19 15 37 37 H 1.09001 * 110.50876 * 359.97438 * 21 19 15 38 38 H 1.08999 * 110.37308 * 142.80992 * 22 21 19 39 39 H 1.09000 * 110.37407 * 265.04124 * 22 21 19 40 40 H 1.09000 * 110.36957 * 281.68482 * 24 23 22 41 41 H 1.08997 * 110.37266 * 159.34258 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4334 -7.4030 -0.0066 15 6 2.4276 -8.5659 -0.0118 16 1 3.1123 -8.4623 0.8300 17 6 3.2215 -8.5523 -1.3197 18 8 4.0221 -7.3702 -1.3787 19 6 1.6669 -9.8879 0.1093 20 1 0.9438 -9.9869 -0.7003 21 6 2.6496 -11.0802 0.1071 22 6 2.4237 -11.7555 1.4780 23 8 1.0855 -11.3716 1.8623 24 6 0.9635 -9.9838 1.4814 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 2.8727 -3.6038 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 3.1358 -6.1343 -0.0032 31 1 0.8077 -7.4644 0.8838 32 1 0.8057 -7.4571 -0.8961 33 1 3.8662 -9.4303 -1.3625 34 1 2.5317 -8.5665 -2.1635 35 1 4.5540 -7.2950 -2.1827 36 1 2.4112 -11.7700 -0.7024 37 1 3.6773 -10.7279 0.0192 38 1 2.4953 -12.8390 1.3836 39 1 3.1488 -11.3898 2.2051 40 1 1.4634 -9.3451 2.2095 41 1 -0.0866 -9.7065 1.3896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117691566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:09 Heat of formation + Delta-G solvation = -183.577117 kcal Electronic energy + Delta-G solvation = -20997.862757 eV Core-core repulsion = 17682.742525 eV Total energy + Delta-G solvation = -3315.120232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06908 -40.31230 -38.27844 -36.00869 -35.52129 -34.41984 -32.96302 -31.14619 -29.28938 -28.05877 -26.44616 -23.77822 -23.66505 -22.61119 -21.49467 -20.58047 -18.83266 -18.28697 -17.74858 -17.25169 -16.91740 -16.70219 -16.44076 -16.31290 -16.26096 -15.66805 -15.07649 -14.62518 -14.53171 -14.28020 -14.11323 -13.63594 -13.55713 -13.21473 -13.00715 -12.80020 -12.49986 -12.47431 -12.35366 -11.92431 -11.90172 -11.64748 -11.62208 -11.50093 -11.29524 -10.80574 -10.77224 -10.64067 -10.56429 -9.94208 -8.17269 -6.31628 1.42233 1.45524 1.56562 1.77307 2.30597 2.46363 3.03711 3.15020 3.15348 3.52448 3.81092 3.92829 3.98832 4.14029 4.21131 4.24635 4.33880 4.37479 4.53300 4.54786 4.58322 4.62838 4.69790 4.76092 4.82124 4.85533 4.89829 5.03234 5.11693 5.12116 5.27057 5.49218 5.62390 5.64222 5.84140 5.86422 6.18844 6.72274 6.86878 6.99616 7.38383 7.45991 8.95573 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037892 B = 0.003116 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.762766 B = 8984.496020 C = 9417.708525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.505 3.495 12 O -0.597 6.597 13 N -0.706 5.706 14 C 0.121 3.879 15 C -0.080 4.080 16 H 0.091 0.909 17 C 0.081 3.919 18 O -0.590 6.590 19 C -0.106 4.106 20 H 0.092 0.908 21 C -0.145 4.145 22 C 0.035 3.965 23 O -0.401 6.401 24 C 0.043 3.957 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.019 1.019 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.419 0.581 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.532 -25.483 -2.032 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.294 3.706 12 O -0.478 6.478 13 N -0.361 5.361 14 C -0.003 4.003 15 C -0.099 4.099 16 H 0.110 0.890 17 C 0.004 3.996 18 O -0.399 6.399 19 C -0.126 4.126 20 H 0.111 0.889 21 C -0.182 4.182 22 C -0.041 4.041 23 O -0.321 6.321 24 C -0.034 4.034 25 H 0.072 0.928 26 H 0.000 1.000 27 H -0.001 1.001 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.251 0.749 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.129 -25.442 -1.359 27.803 hybrid contribution 0.327 1.043 -0.572 1.234 sum 11.456 -24.399 -1.931 27.024 Atomic orbital electron populations 1.70187 1.08356 1.27817 1.51510 1.26169 0.95754 1.04032 0.94614 0.85290 0.78639 0.77552 0.78567 1.19599 1.21147 1.17882 1.21721 0.93993 0.91621 1.50770 0.90626 1.18678 0.93680 0.92513 0.94579 1.21598 0.99251 0.90378 1.04532 1.21339 0.87754 0.87060 0.74489 1.90636 1.16733 1.88583 1.51848 1.46009 1.11453 1.04200 1.74475 1.21390 0.94791 0.83050 1.01020 1.21383 0.96199 0.92477 0.99796 0.89042 1.22285 0.93498 0.88029 0.95825 1.86224 1.62158 1.43711 1.47819 1.22379 0.98008 0.93508 0.98677 0.88943 1.23070 1.00479 0.96286 0.98378 1.23645 0.83715 1.01457 0.95329 1.89121 1.32940 1.26496 1.83514 1.23581 1.01803 0.83199 0.94794 0.92846 1.00042 1.00062 0.88214 0.87996 0.74006 0.92914 0.93061 0.90465 0.93540 0.74920 0.89122 0.88387 0.87813 0.91668 0.91987 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.71 13.29 21.44 0.28 -60.42 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.98 44.97 29.54 68.60 2.03 47.00 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.49 4.26 29.85 0.13 2.62 16 10 C -0.12 -5.02 5.64 29.85 0.17 -4.86 16 11 C 0.51 20.91 7.83 87.66 0.69 21.60 16 12 O -0.60 -30.86 15.98 -3.04 -0.05 -30.91 16 13 N -0.71 -20.81 5.01 -463.06 -2.32 -23.13 16 14 C 0.12 3.03 4.97 86.38 0.43 3.46 16 15 C -0.08 -1.21 1.62 -10.80 -0.02 -1.23 16 16 H 0.09 1.37 8.09 -2.38 -0.02 1.35 16 17 C 0.08 0.96 6.25 71.98 0.45 1.41 16 18 O -0.59 -8.18 10.88 -148.98 -1.62 -9.80 16 19 C -0.11 -1.41 2.68 -9.78 -0.03 -1.44 16 20 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 21 C -0.14 -1.29 6.13 31.61 0.19 -1.10 16 22 C 0.03 0.42 7.63 72.48 0.55 0.97 16 23 O -0.40 -7.89 11.65 -148.98 -1.74 -9.63 16 24 C 0.04 0.75 6.18 72.49 0.45 1.20 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 27 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 28 H 0.10 3.79 8.14 -2.38 -0.02 3.77 16 29 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.42 10.32 6.29 -92.71 -0.58 9.73 16 31 H 0.05 1.44 7.30 -2.39 -0.02 1.42 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 0.52 6.38 -2.38 -0.02 0.50 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.40 2.48 9.12 -74.06 -0.68 1.81 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.58 6.46 -2.39 -0.02 0.57 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 1.10 7.83 -2.39 -0.02 1.08 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -82.01 332.42 0.07 -81.94 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -0.23 Total: 13.86 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 3.71 Total: -8.91 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -2.03 Total: -83.56 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -3.41 Total: -50.34 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -82.01 0.07 -81.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117691566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.635 kcal (2) G-P(sol) polarization free energy of solvation -82.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds