Wall clock time and date at job start Mon Mar 30 2020 00:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48499 * 109.47299 * 270.00240 * 3 2 1 5 5 H 1.48505 * 109.47076 * 30.00175 * 3 2 1 6 6 H 1.48505 * 109.47198 * 149.99770 * 3 2 1 7 7 C 1.37882 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00086 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46961 * 300.00137 * 9 7 2 11 11 O 1.42900 * 109.47403 * 59.99882 * 9 7 2 12 12 C 1.52999 * 109.47395 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47475 * 179.97438 * 12 9 7 14 14 C 1.46845 * 110.99848 * 169.99528 * 13 12 9 15 15 C 1.53059 * 109.50771 * 185.85896 * 14 13 12 16 16 C 1.53067 * 109.25267 * 300.86402 * 15 14 13 17 17 C 1.53079 * 109.23729 * 57.66020 * 16 15 14 18 18 C 1.46835 * 110.99988 * 294.26083 * 13 12 9 19 19 O 1.43130 * 109.43072 * 297.85350 * 16 15 14 20 20 C 1.43098 * 113.64165 * 181.22921 * 19 16 15 21 21 C 1.53263 * 109.01757 * 57.85369 * 20 19 16 22 22 C 1.53260 * 108.85490 * 305.37051 * 21 20 19 23 23 O 1.42891 * 109.53163 * 177.60739 * 16 15 14 24 24 H 0.96998 * 119.99529 * 359.97438 * 1 2 3 25 25 H 0.96706 * 113.99443 * 59.99910 * 11 9 7 26 26 H 1.09006 * 109.46933 * 59.99453 * 12 9 7 27 27 H 1.09004 * 109.46922 * 299.99848 * 12 9 7 28 28 H 1.09002 * 109.46473 * 65.85347 * 14 13 12 29 29 H 1.08995 * 109.46333 * 305.86838 * 14 13 12 30 30 H 1.09000 * 109.50639 * 180.93076 * 15 14 13 31 31 H 1.08997 * 109.50363 * 60.80021 * 15 14 13 32 32 H 1.08996 * 109.50647 * 62.28983 * 17 16 15 33 33 H 1.09007 * 109.50139 * 182.41961 * 17 16 15 34 34 H 1.09004 * 109.46383 * 294.16592 * 18 13 12 35 35 H 1.08997 * 109.46426 * 54.14310 * 18 13 12 36 36 H 1.09002 * 109.56341 * 297.96408 * 20 19 16 37 37 H 1.09000 * 109.56027 * 177.74273 * 20 19 16 38 38 H 1.08999 * 109.57438 * 65.17826 * 21 20 19 39 39 H 1.08993 * 109.57702 * 185.43049 * 21 20 19 40 40 H 1.08999 * 109.56016 * 174.38408 * 22 21 20 41 41 H 1.08997 * 109.55921 * 294.60361 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4289 -2.5747 -1.1670 12 6 2.2451 -3.6622 -0.0005 13 7 1.5106 -4.9344 0.0001 14 6 2.4166 -6.0652 -0.2381 15 6 1.6012 -7.3531 -0.3760 16 6 0.7955 -7.5801 0.9055 17 6 -0.1044 -6.3675 1.1568 18 6 0.7601 -5.1081 1.2501 19 8 1.6922 -7.7450 2.0088 20 6 1.0310 -7.9916 3.2537 21 6 0.1607 -9.2457 3.1171 22 6 -0.7843 -9.0654 1.9241 23 8 -0.0106 -8.7511 0.7619 24 1 -0.4849 0.8401 0.0004 25 1 0.9208 -2.5291 -1.9983 26 1 2.8719 -3.6044 0.8895 27 1 2.8718 -3.6045 -0.8906 28 1 3.1069 -6.1604 0.6002 29 1 2.9802 -5.8922 -1.1548 30 1 2.2748 -8.1950 -0.5363 31 1 0.9209 -7.2642 -1.2229 32 1 -0.8123 -6.2630 0.3347 33 1 -0.6485 -6.5056 2.0912 34 1 1.4577 -5.2072 2.0818 35 1 0.1211 -4.2404 1.4137 36 1 0.4032 -7.1378 3.5090 37 1 1.7733 -8.1459 4.0369 38 1 0.7967 -10.1152 2.9509 39 1 -0.4210 -9.3876 4.0279 40 1 -1.3386 -9.9885 1.7548 41 1 -1.4817 -8.2535 2.1305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119783434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:02 Heat of formation + Delta-G solvation = -163.299319 kcal Electronic energy + Delta-G solvation = -22445.148545 eV Core-core repulsion = 19130.907624 eV Total energy + Delta-G solvation = -3314.240921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75620 -39.22416 -37.17205 -36.64685 -34.26838 -34.08226 -32.19289 -31.86819 -29.62326 -26.96261 -26.59494 -24.72991 -24.47184 -22.27991 -21.72766 -20.33711 -19.10110 -18.38662 -17.62134 -17.05141 -16.65783 -16.50476 -16.26187 -16.02702 -15.64920 -15.49368 -15.26817 -15.08546 -14.35893 -14.31029 -14.10382 -13.52138 -13.26759 -13.19918 -13.01179 -12.81176 -12.72374 -12.48638 -12.32227 -12.19337 -12.07451 -11.97076 -11.75950 -11.67667 -11.00175 -10.96542 -10.69734 -10.36041 -10.07391 -9.12548 -8.12150 -6.38101 1.41648 1.41694 1.52661 2.39163 2.57277 2.62947 3.02343 3.14443 3.51567 3.66843 3.79114 3.83088 4.06070 4.17906 4.23360 4.26668 4.36428 4.39299 4.44967 4.47464 4.49307 4.62432 4.66088 4.76092 4.81346 4.84977 4.89881 4.93815 4.99453 5.05933 5.12977 5.22143 5.61899 5.76323 5.86650 6.00997 6.20847 6.23379 6.28145 6.75447 7.36372 7.65037 8.92366 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037653 B = 0.004232 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.458835 B = 6615.107740 C = 6699.824302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.239 3.761 10 H 0.019 0.981 11 O -0.569 6.569 12 C 0.049 3.951 13 N -0.536 5.536 14 C 0.062 3.938 15 C -0.085 4.085 16 C 0.277 3.723 17 C -0.154 4.154 18 C 0.070 3.930 19 O -0.399 6.399 20 C 0.040 3.960 21 C -0.181 4.181 22 C 0.042 3.958 23 O -0.400 6.400 24 H 0.261 0.739 25 H 0.353 0.647 26 H 0.022 0.978 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -18.131 5.000 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.628 4.628 8 H 0.077 0.923 9 C 0.181 3.819 10 H 0.037 0.963 11 O -0.373 6.373 12 C -0.079 4.079 13 N -0.261 5.261 14 C -0.066 4.066 15 C -0.123 4.123 16 C 0.200 3.800 17 C -0.192 4.192 18 C -0.059 4.059 19 O -0.320 6.320 20 C -0.036 4.036 21 C -0.219 4.219 22 C -0.034 4.034 23 O -0.321 6.321 24 H 0.070 0.930 25 H 0.197 0.803 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.649 -18.170 4.897 18.830 hybrid contribution 0.926 1.293 0.732 1.751 sum 1.575 -16.878 5.630 17.861 Atomic orbital electron populations 1.70224 1.07676 1.27316 1.48452 1.25880 0.95449 1.02843 0.93349 0.85563 0.78685 0.78838 0.78495 1.19718 1.20928 1.18975 1.22070 0.93557 0.92845 1.54290 0.92293 1.19157 0.87732 0.89960 0.85079 0.96296 1.86500 1.38606 1.96447 1.15706 1.22682 0.95931 0.89437 0.99842 1.61910 1.27559 1.01994 1.34595 1.22046 0.93755 0.89400 1.01360 1.21405 0.99085 0.97609 0.94176 1.22649 0.85175 0.83912 0.88255 1.22485 0.98946 0.94383 1.03415 1.21810 0.96370 0.97210 0.90466 1.88162 1.34847 1.91649 1.17371 1.22896 0.97747 0.96859 0.86074 1.22715 0.99716 0.98913 1.00551 1.22922 0.93098 1.02407 0.84925 1.88094 1.59213 1.46053 1.38754 0.93017 0.80292 0.95967 0.90725 0.94886 0.89158 0.88998 0.89162 0.90251 0.89902 0.95271 0.92495 0.92713 0.87125 0.90298 0.87199 0.86495 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.22 12.84 21.45 0.28 -53.95 16 2 C 0.03 1.53 5.40 84.66 0.46 1.99 16 3 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.59 -32.61 8.76 25.60 0.22 -32.39 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.24 12.38 2.70 29.85 0.08 12.46 16 10 H 0.02 1.12 6.43 -2.38 -0.02 1.10 16 11 O -0.57 -30.37 12.60 -148.98 -1.88 -32.24 16 12 C 0.05 2.05 4.56 86.30 0.39 2.45 16 13 N -0.54 -19.87 4.52 -896.33 -4.05 -23.92 16 14 C 0.06 1.88 5.33 86.33 0.46 2.34 16 15 C -0.09 -2.33 5.48 30.64 0.17 -2.16 16 16 C 0.28 7.71 1.08 30.64 0.03 7.74 16 17 C -0.15 -4.62 4.37 30.64 0.13 -4.48 16 18 C 0.07 2.52 5.16 86.33 0.45 2.96 16 19 O -0.40 -11.02 9.20 -126.25 -1.16 -12.19 16 20 C 0.04 0.83 6.59 72.07 0.48 1.30 16 21 C -0.18 -2.91 6.35 30.77 0.20 -2.71 16 22 C 0.04 0.80 6.60 72.07 0.48 1.27 16 23 O -0.40 -10.52 10.35 -126.25 -1.31 -11.83 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.35 16.79 9.04 -74.05 -0.67 16.12 16 26 H 0.02 0.94 8.12 -2.38 -0.02 0.92 16 27 H 0.07 2.96 7.99 -2.38 -0.02 2.94 16 28 H 0.03 1.03 7.75 -2.39 -0.02 1.01 16 29 H 0.09 2.48 8.01 -2.39 -0.02 2.47 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.17 5.15 -2.38 -0.01 2.16 16 34 H 0.03 1.05 7.75 -2.38 -0.02 1.03 16 35 H 0.06 2.39 6.21 -2.39 -0.01 2.38 16 36 H 0.05 1.14 6.49 -2.39 -0.02 1.12 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.08 6.61 -2.39 -0.02 1.06 16 Total: -1.00 -67.00 315.33 -2.20 -69.20 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.35 Total: 28.70 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.54 Total: -9.23 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -3.78 Total: -77.87 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -4.35 Total: -56.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.00 -2.20 -69.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119783434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.102 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds