Wall clock time and date at job start Mon Mar 30 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.53003 * 109.46859 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46689 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99663 * 269.99464 * 5 4 3 7 7 H 1.07994 * 119.99585 * 143.75235 * 6 5 4 8 8 C 1.38954 * 120.00025 * 323.75836 * 6 5 4 9 9 N 1.31405 * 119.99776 * 160.76177 * 8 6 5 10 10 Si 1.86799 * 119.99840 * 340.75815 * 8 6 5 11 11 H 1.48497 * 109.47133 * 90.51945 * 10 8 6 12 12 H 1.48507 * 109.46824 * 210.51916 * 10 8 6 13 13 H 1.48493 * 109.47462 * 330.51671 * 10 8 6 14 14 C 1.34769 * 120.00355 * 90.00317 * 5 4 3 15 15 O 1.21292 * 119.99812 * 355.28143 * 14 5 4 16 16 C 1.50704 * 120.00117 * 175.28672 * 14 5 4 17 17 C 1.52998 * 109.47059 * 185.38527 * 16 14 5 18 18 C 1.53002 * 109.47043 * 184.43390 * 17 16 14 19 19 O 1.43749 * 109.63252 * 296.77051 * 18 17 16 20 20 C 1.44789 * 104.81474 * 215.80698 * 19 18 17 21 21 C 1.54914 * 101.72052 * 36.10378 * 20 19 18 22 22 O 1.43369 * 109.62796 * 177.40426 * 18 17 16 23 23 H 1.09010 * 109.46637 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47314 * 299.99525 * 1 2 3 25 25 H 1.09004 * 109.47187 * 60.00356 * 1 2 3 26 26 H 1.09004 * 109.46939 * 240.00155 * 2 1 3 27 27 H 1.08996 * 109.47142 * 120.00288 * 2 1 3 28 28 H 1.09004 * 109.47218 * 60.00326 * 3 2 1 29 29 H 1.08996 * 109.47479 * 300.00082 * 3 2 1 30 30 H 1.09000 * 109.47314 * 60.00475 * 4 3 2 31 31 H 1.09004 * 109.47187 * 299.99644 * 4 3 2 32 32 H 0.97008 * 120.00027 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46676 * 65.39180 * 16 14 5 34 34 H 1.08995 * 109.47276 * 305.38901 * 16 14 5 35 35 H 1.09004 * 109.47148 * 64.43474 * 17 16 14 36 36 H 1.08995 * 109.47366 * 304.43937 * 17 16 14 37 37 H 1.09003 * 109.62297 * 57.01496 * 18 17 16 38 38 H 1.08991 * 110.97553 * 277.99561 * 20 19 18 39 39 H 1.08998 * 111.01023 * 154.22430 * 20 19 18 40 40 H 1.09004 * 110.69701 * 206.04030 * 21 20 19 41 41 H 1.09000 * 110.84696 * 82.90649 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2873 3.4704 -1.1858 7 1 4.0736 4.5251 -1.2761 8 6 4.7942 2.7686 -2.2727 9 7 4.6658 3.2550 -3.4866 10 14 5.6583 1.1338 -2.0081 11 1 4.6670 0.0311 -2.0889 12 1 6.6941 0.9461 -3.0557 13 1 6.3010 1.1245 -0.6694 14 6 4.2824 3.4588 1.1686 15 8 3.9995 2.9185 2.2170 16 6 4.8845 4.8404 1.1714 17 6 5.1568 5.2751 2.6129 18 6 5.6644 6.7184 2.6230 19 8 6.9181 6.7944 1.9239 20 6 7.6869 7.7842 2.6489 21 6 7.2524 7.5114 4.1106 22 8 5.8630 7.1496 3.9758 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 5.0200 2.7653 -4.2454 33 1 4.1903 5.5401 0.7060 34 1 5.8199 4.8302 0.6121 35 1 5.9102 4.6219 3.0532 36 1 4.2359 5.2097 3.1922 37 1 4.9357 7.3662 2.1355 38 1 7.4120 8.7932 2.3419 39 1 8.7566 7.6177 2.5222 40 1 7.3592 8.4100 4.7183 41 1 7.8250 6.6885 4.5383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182728266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:48 Heat of formation + Delta-G solvation = -133.133311 kcal Electronic energy + Delta-G solvation = -21583.307699 eV Core-core repulsion = 18270.374874 eV Total energy + Delta-G solvation = -3312.932825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26318 -38.85092 -35.66640 -34.92062 -33.97497 -33.03565 -31.85703 -29.65041 -28.52360 -25.67515 -24.68717 -23.37454 -22.98947 -21.19525 -20.66565 -18.89696 -17.37241 -16.72820 -16.63497 -16.21092 -15.82317 -15.20298 -14.86480 -14.60436 -14.33944 -13.84256 -13.48915 -13.41294 -12.90170 -12.86243 -12.72325 -12.45295 -12.30234 -12.07027 -11.75369 -11.49526 -11.32570 -11.17463 -10.98964 -10.65612 -10.55731 -10.40355 -10.27564 -10.22602 -10.01453 -9.68720 -9.49089 -9.09210 -8.52075 -7.79119 -6.47219 -4.06053 3.03669 3.21434 3.28627 3.45724 3.77550 4.04762 4.12317 4.45533 4.54785 4.81933 4.95617 4.99112 5.26835 5.34038 5.38126 5.39719 5.45840 5.52819 5.55973 5.78041 5.81642 5.84732 6.00440 6.14369 6.16913 6.20129 6.26924 6.28053 6.37872 6.50030 6.53436 6.66672 6.79751 6.83201 6.96560 7.14156 7.38545 8.08517 8.27040 8.96880 9.37754 9.72549 10.63755 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.005167 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.873175 B = 5417.428268 C = 6420.396572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.098 3.902 5 N -0.465 5.465 6 C -0.340 4.340 7 H 0.105 0.895 8 C 0.066 3.934 9 N -0.862 5.862 10 Si 0.882 3.118 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.264 1.264 14 C 0.478 3.522 15 O -0.602 6.602 16 C -0.113 4.113 17 C -0.112 4.112 18 C 0.232 3.768 19 O -0.370 6.370 20 C 0.014 3.986 21 C 0.021 3.979 22 O -0.387 6.387 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.275 0.725 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 4.310 8.348 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.025 4.025 5 N -0.185 5.185 6 C -0.467 4.467 7 H 0.123 0.877 8 C -0.141 4.141 9 N -0.497 5.497 10 Si 0.710 3.290 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.269 3.731 15 O -0.488 6.488 16 C -0.153 4.153 17 C -0.151 4.151 18 C 0.137 3.863 19 O -0.290 6.290 20 C -0.062 4.062 21 C -0.056 4.056 22 O -0.308 6.308 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.011 3.911 8.587 9.647 hybrid contribution 0.599 -0.679 -0.283 0.949 sum 2.610 3.232 8.304 9.285 Atomic orbital electron populations 1.21741 0.96177 1.00833 1.01754 1.21487 0.95587 0.97583 1.01520 1.21828 0.96028 0.95877 1.02576 1.21713 0.94203 0.85565 1.00986 1.43788 1.57108 1.11759 1.05854 1.19106 1.44109 0.96888 0.86579 0.87720 1.25329 0.95670 0.98341 0.94804 1.69731 1.41965 1.39897 0.98142 0.86944 0.79656 0.83619 0.78738 1.19975 1.21740 1.18791 1.20390 0.80890 0.88674 0.83194 1.90531 1.57117 1.69315 1.31800 1.21209 1.02924 0.95212 0.95913 1.21740 1.02528 0.92755 0.98038 1.24265 0.87117 0.96991 0.77894 1.89337 1.27804 1.59846 1.52010 1.24347 0.98335 0.93531 0.90018 1.24154 0.82796 1.01150 0.97502 1.88888 1.25950 1.86052 1.29905 0.93319 0.92905 0.92775 0.92357 0.92333 0.91945 0.91249 0.91775 0.91562 0.91497 0.89953 0.88601 0.90906 0.89507 0.89745 0.90809 0.87573 0.88603 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.12 -2.49 5.54 -26.73 -0.15 -2.64 16 4 C 0.10 2.23 4.16 -4.04 -0.02 2.21 16 5 N -0.47 -11.40 2.22 -114.80 -0.25 -11.65 16 6 C -0.34 -8.87 9.04 -14.93 -0.13 -9.00 16 7 H 0.11 2.84 7.35 -52.49 -0.39 2.45 16 8 C 0.07 1.74 5.36 -17.47 -0.09 1.64 16 9 N -0.86 -23.77 13.96 55.50 0.77 -22.99 16 10 Si 0.88 20.82 24.96 -169.99 -4.24 16.58 16 11 H -0.27 -6.14 6.50 56.52 0.37 -5.77 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.48 11.34 7.61 -10.99 -0.08 11.25 16 15 O -0.60 -15.21 15.52 5.55 0.09 -15.12 16 16 C -0.11 -2.27 4.23 -27.88 -0.12 -2.38 16 17 C -0.11 -2.01 4.71 -26.73 -0.13 -2.13 16 18 C 0.23 3.57 4.04 37.16 0.15 3.72 16 19 O -0.37 -5.70 10.90 -59.04 -0.64 -6.34 16 20 C 0.01 0.15 7.95 38.17 0.30 0.46 16 21 C 0.02 0.22 8.07 38.17 0.31 0.52 16 22 O -0.39 -5.64 11.22 -59.04 -0.66 -6.31 16 23 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.06 1.49 2.71 -51.93 -0.14 1.35 16 31 H 0.07 1.50 7.49 -51.93 -0.39 1.11 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.57 7.80 -51.93 -0.41 1.17 16 34 H 0.10 2.00 7.78 -51.93 -0.40 1.60 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.59 7.90 -51.93 -0.41 1.18 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -30.30 331.23 -6.50 -36.80 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.80 Total: 4.29 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.25 Total: -0.25 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.52 Total: -34.64 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -1.22 Total: -27.77 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.24 Total: 16.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.30 -6.50 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182728266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.332 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds