Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.53003 * 109.46859 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46689 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99663 * 269.99464 * 5 4 3 7 7 H 1.07994 * 119.99585 * 143.75235 * 6 5 4 8 8 C 1.38954 * 120.00025 * 323.75836 * 6 5 4 9 9 N 1.31405 * 119.99776 * 160.76177 * 8 6 5 10 10 Si 1.86799 * 119.99840 * 340.75815 * 8 6 5 11 11 H 1.48497 * 109.47133 * 90.51945 * 10 8 6 12 12 H 1.48507 * 109.46824 * 210.51916 * 10 8 6 13 13 H 1.48493 * 109.47462 * 330.51671 * 10 8 6 14 14 C 1.34769 * 120.00355 * 90.00317 * 5 4 3 15 15 O 1.21292 * 119.99812 * 355.28143 * 14 5 4 16 16 C 1.50704 * 120.00117 * 175.28672 * 14 5 4 17 17 C 1.52998 * 109.47059 * 185.38527 * 16 14 5 18 18 C 1.53002 * 109.47043 * 184.43390 * 17 16 14 19 19 O 1.43749 * 109.63252 * 296.77051 * 18 17 16 20 20 C 1.44789 * 104.81474 * 215.80698 * 19 18 17 21 21 C 1.54914 * 101.72052 * 36.10378 * 20 19 18 22 22 O 1.43369 * 109.62796 * 177.40426 * 18 17 16 23 23 H 1.09010 * 109.46637 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47314 * 299.99525 * 1 2 3 25 25 H 1.09004 * 109.47187 * 60.00356 * 1 2 3 26 26 H 1.09004 * 109.46939 * 240.00155 * 2 1 3 27 27 H 1.08996 * 109.47142 * 120.00288 * 2 1 3 28 28 H 1.09004 * 109.47218 * 60.00326 * 3 2 1 29 29 H 1.08996 * 109.47479 * 300.00082 * 3 2 1 30 30 H 1.09000 * 109.47314 * 60.00475 * 4 3 2 31 31 H 1.09004 * 109.47187 * 299.99644 * 4 3 2 32 32 H 0.97008 * 120.00027 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46676 * 65.39180 * 16 14 5 34 34 H 1.08995 * 109.47276 * 305.38901 * 16 14 5 35 35 H 1.09004 * 109.47148 * 64.43474 * 17 16 14 36 36 H 1.08995 * 109.47366 * 304.43937 * 17 16 14 37 37 H 1.09003 * 109.62297 * 57.01496 * 18 17 16 38 38 H 1.08991 * 110.97553 * 277.99561 * 20 19 18 39 39 H 1.08998 * 111.01023 * 154.22430 * 20 19 18 40 40 H 1.09004 * 110.69701 * 206.04030 * 21 20 19 41 41 H 1.09000 * 110.84696 * 82.90649 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2873 3.4704 -1.1858 7 1 4.0736 4.5251 -1.2761 8 6 4.7942 2.7686 -2.2727 9 7 4.6658 3.2550 -3.4866 10 14 5.6583 1.1338 -2.0081 11 1 4.6670 0.0311 -2.0889 12 1 6.6941 0.9461 -3.0557 13 1 6.3010 1.1245 -0.6694 14 6 4.2824 3.4588 1.1686 15 8 3.9995 2.9185 2.2170 16 6 4.8845 4.8404 1.1714 17 6 5.1568 5.2751 2.6129 18 6 5.6644 6.7184 2.6230 19 8 6.9181 6.7944 1.9239 20 6 7.6869 7.7842 2.6489 21 6 7.2524 7.5114 4.1106 22 8 5.8630 7.1496 3.9758 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 5.0200 2.7653 -4.2454 33 1 4.1903 5.5401 0.7060 34 1 5.8199 4.8302 0.6121 35 1 5.9102 4.6219 3.0532 36 1 4.2359 5.2097 3.1922 37 1 4.9357 7.3662 2.1355 38 1 7.4120 8.7932 2.3419 39 1 8.7566 7.6177 2.5222 40 1 7.3592 8.4100 4.7183 41 1 7.8250 6.6885 4.5383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182728266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -152.146301 kcal Electronic energy + Delta-G solvation = -21584.132164 eV Core-core repulsion = 18270.374874 eV Total energy + Delta-G solvation = -3313.757290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37327 -40.69321 -37.44019 -36.00537 -35.63083 -34.48224 -33.85079 -30.86277 -29.90043 -27.27214 -26.50397 -24.67598 -24.06817 -22.56648 -22.14314 -20.83186 -18.85928 -18.21876 -18.06764 -17.65139 -17.26445 -16.81200 -16.34993 -16.09054 -15.86319 -15.33224 -14.88633 -14.71488 -14.56652 -14.34210 -14.03713 -13.85254 -13.68810 -13.54950 -13.34148 -13.08472 -12.88118 -12.61497 -12.43579 -12.18587 -12.10860 -11.94670 -11.89109 -11.74627 -11.47449 -11.15982 -10.98716 -10.67318 -10.42005 -9.77263 -8.52556 -6.13788 1.14982 1.28917 1.39217 1.86228 2.14972 2.41959 2.64258 2.92687 3.07906 3.70993 3.86171 3.92361 3.94751 4.02607 4.10799 4.18859 4.21546 4.26991 4.31549 4.46031 4.50874 4.58589 4.64233 4.74655 4.75613 4.81685 4.88513 4.91136 4.98114 5.03854 5.13702 5.20222 5.25282 5.33074 5.39868 5.47936 6.03167 6.09087 6.25355 6.93413 7.38948 7.76519 8.61644 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.005167 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.873175 B = 5417.428268 C = 6420.396572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.091 3.909 5 N -0.475 5.475 6 C -0.339 4.339 7 H 0.086 0.914 8 C 0.031 3.969 9 N -0.895 5.895 10 Si 0.927 3.073 11 H -0.253 1.253 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.471 3.529 15 O -0.619 6.619 16 C -0.103 4.103 17 C -0.104 4.104 18 C 0.239 3.761 19 O -0.398 6.398 20 C 0.009 3.991 21 C 0.014 3.986 22 O -0.403 6.403 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.280 0.720 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 4.081 9.014 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.031 4.031 5 N -0.195 5.195 6 C -0.466 4.466 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.532 5.532 10 Si 0.754 3.246 11 H -0.179 1.179 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.262 3.738 15 O -0.506 6.506 16 C -0.143 4.143 17 C -0.142 4.142 18 C 0.144 3.856 19 O -0.319 6.319 20 C -0.066 4.066 21 C -0.061 4.061 22 O -0.325 6.325 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.288 3.683 9.256 10.221 hybrid contribution 0.556 -0.539 -0.425 0.883 sum 2.843 3.144 8.831 9.796 Atomic orbital electron populations 1.21714 0.94081 1.02483 1.01849 1.21489 0.97439 0.94874 1.02098 1.21740 0.94090 0.98296 1.01309 1.21862 0.96012 0.84614 1.00662 1.43930 1.57538 1.12481 1.05569 1.18981 1.44087 0.96370 0.87196 0.89586 1.25819 0.95986 1.01113 0.94465 1.69787 1.43063 1.41473 0.98835 0.86199 0.79155 0.81162 0.78072 1.17910 1.21057 1.19829 1.20992 0.80334 0.89762 0.82701 1.90507 1.57766 1.70057 1.32226 1.21142 1.02215 0.93399 0.97565 1.21622 1.01906 0.94669 0.95993 1.24052 0.87681 0.95128 0.78724 1.89304 1.28180 1.61551 1.52855 1.24677 0.99095 0.93437 0.89405 1.24455 0.80846 1.02710 0.98095 1.88868 1.28320 1.86030 1.29258 0.90891 0.92681 0.92885 0.92070 0.91449 0.92908 0.92693 0.92056 0.91682 0.90990 0.89123 0.89449 0.92263 0.90211 0.88685 0.88977 0.85373 0.85312 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -3.78 5.93 30.59 0.18 -3.60 16 3 C -0.12 -4.59 5.54 30.59 0.17 -4.42 16 4 C 0.09 4.10 4.16 86.38 0.36 4.46 16 5 N -0.47 -23.48 2.22 -635.51 -1.41 -24.89 16 6 C -0.34 -17.94 9.04 84.04 0.76 -17.18 16 7 H 0.09 4.80 7.35 -2.91 -0.02 4.78 16 8 C 0.03 1.62 5.36 84.93 0.46 2.08 16 9 N -0.89 -49.57 13.96 21.66 0.30 -49.27 16 10 Si 0.93 42.37 24.96 68.60 1.71 44.09 16 11 H -0.25 -10.71 6.50 99.48 0.65 -10.06 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 14 C 0.47 22.60 7.61 87.66 0.67 23.27 16 15 O -0.62 -31.51 15.52 -3.07 -0.05 -31.56 16 16 C -0.10 -4.22 4.23 29.85 0.13 -4.10 16 17 C -0.10 -3.72 4.71 30.59 0.14 -3.58 16 18 C 0.24 7.18 4.04 71.98 0.29 7.47 16 19 O -0.40 -11.89 10.90 -126.22 -1.38 -13.27 16 20 C 0.01 0.18 7.95 72.64 0.58 0.76 16 21 C 0.01 0.27 8.07 72.64 0.59 0.86 16 22 O -0.40 -11.22 11.22 -126.22 -1.42 -12.64 16 23 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.79 2.71 -2.39 -0.01 2.78 16 31 H 0.06 2.92 7.49 -2.38 -0.02 2.90 16 32 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 33 H 0.09 3.52 7.80 -2.39 -0.02 3.50 16 34 H 0.09 3.72 7.78 -2.39 -0.02 3.70 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 2.94 7.90 -2.39 -0.02 2.92 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.62 331.23 3.73 -60.89 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.94 Total: 23.61 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.03 Total: 3.03 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.11 Total: -74.16 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -2.84 Total: -57.46 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.71 Total: 44.09 kcal Total: -64.62 3.73 -60.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182728266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.256 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds