Wall clock time and date at job start Mon Mar 30 2020 00:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 O 1.42967 * 109.46882 * 119.99591 * 2 1 3 5 5 C 1.43095 * 113.77014 * 61.20565 * 4 2 1 6 6 C 1.53266 * 108.94092 * 57.97057 * 5 4 2 7 7 C 1.50698 * 109.57072 * 185.66632 * 6 5 4 8 8 O 1.21278 * 120.00464 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99584 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99694 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47013 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47046 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00322 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99757 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99862 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00039 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47134 * 89.99697 * 17 15 13 19 19 H 1.48504 * 109.47043 * 210.00013 * 17 15 13 20 20 H 1.48509 * 109.46875 * 329.99641 * 17 15 13 21 21 C 1.53256 * 108.84277 * 305.47453 * 6 5 4 22 22 O 1.42958 * 109.47390 * 239.99497 * 2 1 3 23 23 H 1.08998 * 109.47729 * 300.00216 * 1 2 3 24 24 H 1.09002 * 109.47504 * 60.00628 * 1 2 3 25 25 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47553 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.46866 * 300.00069 * 3 2 1 28 28 H 1.09001 * 109.47462 * 59.99266 * 3 2 1 29 29 H 1.08999 * 109.55643 * 177.80695 * 5 4 2 30 30 H 1.08998 * 109.55964 * 298.13092 * 5 4 2 31 31 H 1.08997 * 109.57081 * 65.28194 * 6 5 4 32 32 H 0.97004 * 119.99900 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.47502 * 299.99660 * 10 9 7 34 34 H 1.09000 * 109.47634 * 60.00342 * 10 9 7 35 35 H 1.08999 * 109.47226 * 299.99880 * 11 10 9 36 36 H 1.09003 * 109.47047 * 59.99600 * 11 10 9 37 37 H 1.08999 * 109.47105 * 300.00288 * 12 11 10 38 38 H 1.09005 * 109.46529 * 60.00471 * 12 11 10 39 39 H 0.97002 * 119.99802 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.55755 * 174.36031 * 21 6 5 41 41 H 1.08996 * 109.55968 * 294.68708 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6739 1.1674 5 6 1.6040 -2.0448 1.2467 6 6 2.1043 -2.7830 0.0002 7 6 1.5712 -4.1926 0.0003 8 8 0.8611 -4.5723 0.9072 9 7 1.8844 -5.0316 -1.0069 10 6 1.3657 -6.4016 -1.0071 11 6 1.8666 -7.1364 -2.2522 12 6 1.3254 -8.5675 -2.2521 13 6 1.8182 -9.2909 -3.4787 14 1 2.4542 -8.7812 -4.1873 15 6 1.4581 -10.6041 -3.6959 16 7 1.8886 -11.2356 -4.7662 17 14 0.3587 -11.4860 -2.4700 18 1 -1.0632 -11.2927 -2.8518 19 1 0.6790 -12.9361 -2.4717 20 1 0.5865 -10.9304 -1.1117 21 6 1.6041 -2.0449 -1.2463 22 8 2.0066 -0.6740 -1.1672 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 2.0348 -2.5005 2.1382 30 1 0.5166 -2.1037 1.2939 31 1 3.1941 -2.8027 0.0003 32 1 2.4527 -4.7279 -1.7321 33 1 1.7123 -6.9215 -0.1139 34 1 0.2760 -6.3776 -1.0137 35 1 1.5196 -6.6164 -3.1451 36 1 2.9563 -7.1604 -2.2461 37 1 1.6727 -9.0872 -1.3592 38 1 0.2356 -8.5438 -2.2580 39 1 1.6349 -12.1593 -4.9191 40 1 2.0350 -2.5008 -2.1378 41 1 0.5168 -2.1039 -1.2936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184456827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:11 Heat of formation + Delta-G solvation = -172.384146 kcal Electronic energy + Delta-G solvation = -21080.389625 eV Core-core repulsion = 17765.754756 eV Total energy + Delta-G solvation = -3314.634869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89745 -40.38749 -37.11419 -36.79157 -35.22618 -34.76882 -33.26926 -31.83463 -29.10005 -28.43104 -27.08855 -25.24544 -23.89784 -22.29108 -21.85522 -20.58856 -19.02017 -18.84443 -18.38657 -17.43040 -17.06480 -16.70766 -16.43445 -16.26384 -15.89808 -15.49872 -15.25370 -14.78727 -14.47292 -14.30050 -13.90423 -13.80686 -13.63945 -13.58082 -13.17713 -13.08171 -12.76360 -12.73483 -12.70958 -12.28762 -12.10175 -11.94473 -11.79916 -11.60615 -11.34248 -11.18399 -10.96965 -10.76728 -10.61884 -10.16600 -8.29910 -6.33864 1.36481 1.38366 1.43254 1.49786 2.01287 2.35814 2.48304 2.61033 3.05999 3.38568 3.53246 3.65664 3.76287 3.85783 3.95934 4.09367 4.19020 4.25385 4.46892 4.49587 4.52467 4.66398 4.68753 4.72096 4.78562 4.82042 4.87479 4.89376 5.02827 5.09255 5.21868 5.32743 5.47960 5.55151 5.64635 5.73416 6.11334 6.26844 6.43506 6.74661 7.09433 7.31110 8.86529 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044699 B = 0.002987 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.259337 B = 9370.982633 C = 9674.402776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.248 3.752 3 C -0.127 4.127 4 O -0.393 6.393 5 C 0.076 3.924 6 C -0.169 4.169 7 C 0.523 3.477 8 O -0.577 6.577 9 N -0.712 5.712 10 C 0.125 3.875 11 C -0.101 4.101 12 C -0.012 4.012 13 C -0.531 4.531 14 H 0.038 0.962 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.247 1.247 21 C 0.065 3.935 22 O -0.389 6.389 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.415 0.585 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.266 0.734 40 H 0.125 0.875 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 25.559 10.591 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.172 3.828 3 C -0.183 4.183 4 O -0.314 6.314 5 C -0.001 4.001 6 C -0.191 4.191 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.364 5.364 10 C 0.002 3.998 11 C -0.139 4.139 12 C -0.050 4.050 13 C -0.569 4.569 14 H 0.056 0.944 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.171 1.171 21 C -0.012 4.012 22 O -0.309 6.309 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.252 0.748 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.690 25.320 11.136 27.713 hybrid contribution -0.322 -1.277 -0.270 1.344 sum -2.012 24.044 10.866 26.462 Atomic orbital electron populations 1.22847 0.94942 1.03345 1.05157 1.23228 0.92328 0.91916 0.75300 1.21674 1.02716 0.89330 1.04626 1.88165 1.76458 1.23326 1.43461 1.22407 0.99953 0.80696 0.97051 1.22512 1.04779 0.91810 0.99989 1.20487 0.79853 0.87233 0.81436 1.90705 1.39338 1.78398 1.37285 1.46018 1.52122 1.12674 1.25538 1.21349 0.98659 0.81105 0.98716 1.21491 1.00809 0.95472 0.96140 1.19469 0.96402 0.93696 0.95482 1.21474 1.30681 0.97273 1.07447 0.94406 1.25996 0.97554 0.98540 0.97205 1.70061 1.47566 1.12264 1.29270 0.85695 0.79231 0.77402 0.80558 1.19220 1.21151 1.17071 1.22709 1.00138 0.81474 0.96862 1.88170 1.76306 1.23184 1.43273 0.89434 0.89151 0.92508 0.91357 0.88785 0.88974 0.87760 0.91926 0.85404 0.74758 0.92287 0.92039 0.91508 0.91730 0.96130 0.96145 0.92519 0.85755 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.93 8.11 71.98 0.58 -2.34 16 2 C 0.25 4.26 1.50 30.59 0.05 4.31 16 3 C -0.13 -1.57 9.21 71.98 0.66 -0.90 16 4 O -0.39 -8.14 10.35 -126.22 -1.31 -9.44 16 5 C 0.08 1.56 5.24 72.07 0.38 1.94 16 6 C -0.17 -3.21 2.93 -11.37 -0.03 -3.24 16 7 C 0.52 12.90 7.16 87.66 0.63 13.52 16 8 O -0.58 -18.80 15.92 -3.02 -0.05 -18.85 16 9 N -0.71 -16.52 5.47 -463.06 -2.53 -19.05 16 10 C 0.13 3.70 5.67 86.38 0.49 4.19 16 11 C -0.10 -3.47 5.27 30.60 0.16 -3.31 16 12 C -0.01 -0.56 4.04 29.85 0.12 -0.43 16 13 C -0.53 -29.69 9.66 25.60 0.25 -29.44 16 14 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 15 C 0.00 0.22 5.47 84.66 0.46 0.69 16 16 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 17 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.25 -10.66 6.54 99.48 0.65 -10.00 16 21 C 0.06 1.09 5.75 72.07 0.41 1.51 16 22 O -0.39 -7.37 10.35 -126.22 -1.31 -8.68 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.93 5.11 -2.39 -0.01 0.91 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.35 6.33 -2.39 -0.02 1.33 16 31 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.42 7.28 8.07 -92.71 -0.75 6.53 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 38 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.12 1.61 7.79 -2.39 -0.02 1.59 16 41 H 0.06 1.09 6.53 -2.39 -0.02 1.07 16 Total: -1.00 -70.26 328.75 1.36 -68.89 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.21 Total: 13.65 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.16 Total: -13.52 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.23 Total: -77.80 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -2.66 Total: -36.97 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -70.26 1.36 -68.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184456827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.491 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds