Wall clock time and date at job start Mon Mar 30 2020 01:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 C 1.50696 * 109.46920 * 185.00472 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99968 * 5 3 2 7 7 C 1.37881 * 120.00447 * 60.00039 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47485 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47198 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47682 * 240.00190 * 9 7 5 13 13 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27733 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.53263 * 109.57598 * 299.35422 * 16 14 13 18 18 O 1.43091 * 108.94511 * 185.67076 * 17 16 14 19 19 C 1.42971 * 113.76763 * 57.97177 * 18 17 16 20 20 C 1.53000 * 109.46776 * 181.20647 * 19 18 17 21 21 C 1.52999 * 109.47080 * 61.20748 * 19 18 17 22 22 O 1.42968 * 109.46793 * 301.20241 * 19 18 17 23 23 C 1.43093 * 113.77072 * 58.80275 * 22 19 18 24 24 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 25 25 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 26 26 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 28 28 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 29 29 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 94.99446 * 13 3 2 31 31 H 1.08997 * 109.57799 * 59.74498 * 16 14 13 32 32 H 1.09003 * 109.56051 * 305.51157 * 17 16 14 33 33 H 1.08999 * 109.55843 * 65.82970 * 17 16 14 34 34 H 1.09004 * 109.47153 * 179.97438 * 20 19 18 35 35 H 1.08997 * 109.47354 * 300.00042 * 20 19 18 36 36 H 1.09002 * 109.47543 * 59.99997 * 20 19 18 37 37 H 1.08996 * 109.47132 * 299.99251 * 21 19 18 38 38 H 1.08997 * 109.47076 * 59.99942 * 21 19 18 39 39 H 1.09004 * 109.46819 * 179.97438 * 21 19 18 40 40 H 1.08996 * 109.55861 * 182.18818 * 23 22 19 41 41 H 1.09000 * 109.56211 * 61.86169 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5988 1.5462 -0.1945 11 1 6.4969 -0.5175 -1.4633 12 1 6.3990 1.6167 -2.6104 13 7 1.6526 2.0975 1.2519 14 6 0.4332 2.6595 1.3689 15 8 -0.3414 2.6275 0.4362 16 6 0.0323 3.3278 2.6588 17 6 0.0639 2.3041 3.7990 18 8 -0.4446 2.9170 4.9878 19 6 -1.7736 3.4257 4.8506 20 6 -2.2060 4.0829 6.1629 21 6 -2.7276 2.2770 4.5169 22 8 -1.8071 4.3939 3.7991 23 6 -1.3911 3.8811 2.5296 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8291 -0.0611 -2.9500 30 1 2.2721 2.1230 1.9978 31 1 0.7224 4.1426 2.8778 32 1 -0.5559 1.4466 3.5368 33 1 1.0899 1.9768 3.9673 34 1 -3.2192 4.4713 6.0582 35 1 -2.1805 3.3449 6.9646 36 1 -1.5264 4.9013 6.4007 37 1 -2.4195 1.8089 3.5820 38 1 -2.7020 1.5390 5.3186 39 1 -3.7409 2.6649 4.4128 40 1 -1.4056 4.6818 1.7902 41 1 -2.0660 3.0834 2.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184459792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:33 Heat of formation + Delta-G solvation = -162.948183 kcal Electronic energy + Delta-G solvation = -22329.214414 eV Core-core repulsion = 19014.988719 eV Total energy + Delta-G solvation = -3314.225695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83824 -40.34230 -37.06355 -36.75541 -34.83592 -34.21150 -32.80774 -31.62653 -29.01413 -28.43040 -27.04255 -25.27218 -24.28906 -22.33942 -21.32415 -20.67498 -19.07567 -18.72800 -17.76700 -17.46105 -17.05743 -16.65634 -16.24903 -16.13658 -15.61214 -15.21390 -14.68451 -14.59728 -14.42470 -13.94809 -13.62276 -13.60599 -13.41271 -13.18304 -13.14374 -13.06033 -12.88932 -12.71486 -12.70577 -12.23992 -12.15243 -12.07689 -12.06010 -11.60192 -11.15277 -11.04086 -10.73534 -10.57907 -10.51091 -9.67444 -8.16986 -6.33984 1.43533 1.45546 1.56545 1.70540 2.27774 2.45634 2.50838 2.75136 3.12925 3.47438 3.59777 3.74392 3.88496 3.89130 4.05666 4.27696 4.48333 4.51433 4.55025 4.56120 4.69179 4.71610 4.74458 4.76224 4.82165 4.85137 5.05319 5.11641 5.23543 5.25325 5.42460 5.54532 5.60052 5.75278 5.79275 5.90210 6.13487 6.16478 6.73938 6.91175 7.31980 7.50539 8.88379 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.034184 B = 0.004458 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.888142 B = 6278.912532 C = 6565.807200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.580 6.580 16 C -0.168 4.168 17 C 0.071 3.929 18 O -0.387 6.387 19 C 0.246 3.754 20 C -0.124 4.124 21 C -0.205 4.205 22 O -0.393 6.393 23 C 0.081 3.919 24 H 0.044 0.956 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 3.668 15.854 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.349 5.349 14 C 0.299 3.701 15 O -0.461 6.461 16 C -0.190 4.190 17 C -0.006 4.006 18 O -0.308 6.308 19 C 0.171 3.829 20 C -0.181 4.181 21 C -0.263 4.263 22 O -0.314 6.314 23 C 0.004 3.996 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.979 3.750 15.228 18.071 hybrid contribution 1.207 -0.350 -0.861 1.523 sum -7.771 3.400 14.367 16.684 Atomic orbital electron populations 1.21684 0.96941 0.99181 1.00267 1.21784 0.93764 0.99037 1.01425 1.18403 0.93649 0.89267 0.81282 0.98225 1.21607 0.91472 1.38845 1.06680 0.91081 1.25730 1.03127 0.94398 0.95062 1.70044 1.36935 1.38378 1.09867 0.85354 0.79362 0.77803 0.78158 1.18523 1.20474 1.21126 1.46287 1.15186 1.55746 1.17661 1.20472 0.82059 0.78483 0.89129 1.90675 1.52479 1.60790 1.42133 1.22491 1.01177 1.01299 0.94055 1.22606 1.01866 0.92985 0.83141 1.88145 1.32099 1.76176 1.34393 1.23278 0.82376 0.87335 0.89961 1.21668 1.02741 1.01667 0.92032 1.22844 1.00961 0.99278 1.03173 1.88140 1.86338 1.39005 1.17885 1.22324 0.91847 1.00191 0.85210 0.93671 0.95559 0.93587 0.91047 0.93864 0.92620 0.76168 0.86249 0.92006 0.86260 0.88873 0.88626 0.91351 0.92890 0.88986 0.89314 0.88152 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.77 5.45 30.60 0.17 -5.60 16 3 C 0.28 13.76 2.24 44.25 0.10 13.86 16 4 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 5 C -0.55 -28.30 8.73 25.60 0.22 -28.07 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -51.42 11.29 21.45 0.24 -51.18 16 9 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 13 N -0.70 -27.44 4.94 -446.09 -2.20 -29.64 16 14 C 0.51 19.11 5.72 87.66 0.50 19.61 16 15 O -0.58 -26.03 13.05 -3.04 -0.04 -26.07 16 16 C -0.17 -4.79 2.93 -11.36 -0.03 -4.83 16 17 C 0.07 1.76 5.75 72.07 0.41 2.17 16 18 O -0.39 -9.55 10.35 -126.22 -1.31 -10.86 16 19 C 0.25 5.47 1.50 30.59 0.05 5.52 16 20 C -0.12 -1.99 9.21 71.98 0.66 -1.32 16 21 C -0.21 -3.94 8.11 71.98 0.58 -3.36 16 22 O -0.39 -10.40 10.35 -126.22 -1.31 -11.71 16 23 C 0.08 2.30 5.24 72.07 0.38 2.68 16 24 H 0.04 1.84 5.63 -2.39 -0.01 1.83 16 25 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 13.39 8.13 -92.71 -0.75 12.64 16 31 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.06 1.55 6.53 -2.39 -0.02 1.54 16 33 H 0.12 2.60 7.79 -2.39 -0.02 2.58 16 34 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.19 5.11 -2.39 -0.01 1.17 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 40 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.06 1.81 6.33 -2.39 -0.02 1.79 16 Total: -1.00 -63.52 319.74 1.79 -61.74 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.27 Total: 26.92 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.10 Total: -2.73 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.96 Total: -80.82 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.65 Total: -48.63 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -63.52 1.79 -61.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184459792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.212 kcal (2) G-P(sol) polarization free energy of solvation -63.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds