Wall clock time and date at job start Mon Mar 30 2020 01:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 C 1.52993 * 109.47030 * 239.99929 * 2 1 3 5 5 C 1.50702 * 109.46742 * 119.99948 * 2 1 3 6 6 O 1.20827 * 119.99894 * 359.97438 * 5 2 1 7 7 O 1.34225 * 119.99929 * 179.97438 * 5 2 1 8 8 C 1.45197 * 117.00008 * 180.02562 * 7 5 2 9 9 O 1.42891 * 109.47352 * 75.00002 * 8 7 5 10 10 C 1.42903 * 114.00030 * 74.99935 * 9 8 7 11 11 C 1.53935 * 113.73471 * 111.23481 * 10 9 8 12 12 N 1.48193 * 86.10337 * 90.77945 * 11 10 9 13 13 C 1.46894 * 111.06841 * 137.52059 * 12 11 10 14 14 C 1.50700 * 109.47159 * 70.57068 * 13 12 11 15 15 H 1.07999 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99829 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99852 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46860 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47096 * 119.99987 * 18 16 14 21 21 H 1.48500 * 109.47159 * 240.00037 * 18 16 14 22 22 C 1.47967 * 90.79407 * 24.60047 * 12 11 10 23 23 H 1.09001 * 109.47439 * 300.00742 * 1 2 3 24 24 H 1.09004 * 109.46672 * 59.99875 * 1 2 3 25 25 H 1.08991 * 109.47423 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47220 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47444 * 299.99652 * 3 2 1 28 28 H 1.09008 * 109.47198 * 59.99879 * 3 2 1 29 29 H 1.09004 * 109.47263 * 300.00075 * 4 2 1 30 30 H 1.08998 * 109.47154 * 60.00115 * 4 2 1 31 31 H 1.08999 * 109.47184 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46884 * 314.99643 * 8 7 5 33 33 H 1.09011 * 109.46844 * 195.00130 * 8 7 5 34 34 H 1.09002 * 112.93710 * 339.66760 * 10 9 8 35 35 H 1.09000 * 113.76137 * 205.06320 * 11 10 9 36 36 H 1.09002 * 113.75885 * 336.43020 * 11 10 9 37 37 H 1.08999 * 109.46814 * 190.56779 * 13 12 11 38 38 H 1.08996 * 109.47288 * 310.56415 * 13 12 11 39 39 H 0.96995 * 119.99693 * 179.97438 * 17 16 14 40 40 H 1.09001 * 113.75575 * 221.08036 * 22 12 11 41 41 H 1.08993 * 113.75515 * 89.72269 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2470 -1.1692 2.0260 7 8 3.3519 -0.8335 1.4427 8 6 3.7635 -1.5302 2.6483 9 8 3.5637 -2.9349 2.4785 10 6 4.5321 -3.5619 1.6352 11 6 5.4790 -4.5177 2.3833 12 7 4.4904 -5.5773 2.0735 13 6 5.1583 -6.8148 1.6488 14 6 5.8514 -7.4426 2.8305 15 1 5.8004 -6.9699 3.8002 16 6 6.5497 -8.6212 2.6739 17 7 6.6105 -9.1976 1.4935 18 14 7.4094 -9.3991 4.1386 19 1 7.1910 -8.5596 5.3439 20 1 6.8561 -10.7569 4.3735 21 1 8.8652 -9.4987 3.8626 22 6 4.0031 -4.8101 0.9059 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 3.1699 -1.1781 3.4920 33 1 4.8186 -1.3337 2.8392 34 1 5.0465 -2.8571 0.9819 35 1 6.4413 -4.6573 1.8907 36 1 5.5721 -4.3000 3.4473 37 1 4.4181 -7.5089 1.2508 38 1 5.8926 -6.5848 0.8769 39 1 7.1021 -10.0265 1.3833 40 1 2.9192 -4.8256 0.7917 41 1 4.5328 -5.0354 -0.0196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205257576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:10 Heat of formation + Delta-G solvation = -108.552918 kcal Electronic energy + Delta-G solvation = -21334.583596 eV Core-core repulsion = 18022.716657 eV Total energy + Delta-G solvation = -3311.866939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82617 -39.35923 -37.33311 -35.93034 -35.49460 -32.78529 -29.17427 -27.67704 -27.62579 -26.56585 -25.64972 -24.92492 -23.32670 -21.69096 -20.07646 -19.04111 -17.52331 -17.17955 -16.90715 -16.33739 -15.68756 -15.40128 -14.84969 -14.56648 -14.21230 -14.09257 -13.76585 -13.39175 -13.36396 -12.68875 -12.56526 -12.54330 -12.18787 -12.00531 -11.96615 -11.60590 -11.50540 -11.33372 -11.28479 -11.20598 -11.00186 -10.77987 -10.53672 -10.38162 -10.31028 -9.65618 -9.47312 -9.14185 -8.47920 -7.67889 -6.04325 -4.05746 2.15846 2.59554 3.30481 3.37818 3.43563 3.64403 4.28789 4.42657 4.46114 4.50779 4.76896 4.83947 4.88577 5.12163 5.21776 5.25335 5.28613 5.30824 5.32158 5.42352 5.50362 5.53348 5.59710 5.74820 5.82656 5.91338 5.98122 5.99421 6.19543 6.28364 6.32896 6.46930 6.76211 7.18818 7.29586 7.66718 7.71441 7.90983 8.14645 8.45166 9.02378 9.58764 11.07088 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042555 B = 0.003358 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.810142 B = 8337.229081 C = 8577.246797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.471 3.529 6 O -0.493 6.493 7 O -0.376 6.376 8 C 0.219 3.781 9 O -0.343 6.343 10 C 0.047 3.953 11 C 0.004 3.996 12 N -0.468 5.468 13 C 0.157 3.843 14 C -0.508 4.508 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.285 1.285 22 C 0.000 4.000 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.032 0.968 38 H -0.002 1.002 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 22.412 -5.390 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.313 3.687 6 O -0.378 6.378 7 O -0.296 6.296 8 C 0.106 3.894 9 O -0.260 6.260 10 C -0.011 4.011 11 C -0.125 4.125 12 N -0.191 5.191 13 C 0.031 3.969 14 C -0.546 4.546 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.129 4.129 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.016 0.984 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.577 21.726 -4.603 23.465 hybrid contribution 1.343 -0.495 0.127 1.437 sum -6.234 21.230 -4.476 22.575 Atomic orbital electron populations 1.21776 0.91415 1.03432 1.02487 1.20582 0.97399 0.96420 0.91664 1.21869 1.02224 0.92887 1.02825 1.21871 1.02290 1.00620 0.95158 1.23579 0.80849 0.76970 0.87303 1.90695 1.56525 1.44570 1.46036 1.86673 1.26274 1.69879 1.46772 1.24547 1.00084 0.79356 0.85373 1.88236 1.51953 1.18998 1.66851 1.23899 0.90710 0.93863 0.92601 1.24215 0.95111 0.91815 1.01366 1.68651 1.24519 1.02634 1.23283 1.20243 0.93195 0.87504 0.95945 1.21144 1.30782 1.07233 0.95488 0.91929 1.25003 0.96622 0.96986 0.96019 1.69967 1.42543 1.18943 1.22368 0.86430 0.79003 0.79224 0.82724 1.19633 1.20937 1.21084 1.24106 1.01852 0.92028 0.94954 0.91763 0.91291 0.91498 0.91156 0.91032 0.92159 0.91776 0.91055 0.91144 0.87686 0.87497 0.90940 0.90715 0.90009 0.94947 0.98444 0.92957 0.89935 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 7.76 37.16 0.29 -0.86 16 2 C -0.06 -0.54 0.96 -155.66 -0.15 -0.69 16 3 C -0.14 -0.96 8.41 37.15 0.31 -0.65 16 4 C -0.14 -1.17 8.40 37.15 0.31 -0.85 16 5 C 0.47 6.07 6.48 36.01 0.23 6.30 16 6 O -0.49 -8.00 15.42 -19.77 -0.30 -8.31 16 7 O -0.38 -4.67 10.14 -47.08 -0.48 -5.15 16 8 C 0.22 2.78 6.62 101.05 0.67 3.45 16 9 O -0.34 -5.85 10.48 -60.00 -0.63 -6.48 16 10 C 0.05 0.79 4.33 -25.80 -0.11 0.68 16 11 C 0.00 0.08 7.32 -2.63 -0.02 0.07 16 12 N -0.47 -10.83 6.25 -239.73 -1.50 -12.33 16 13 C 0.16 4.24 4.58 -4.98 -0.02 4.22 16 14 C -0.51 -14.74 8.84 -34.44 -0.30 -15.04 16 15 H 0.06 1.82 7.80 -52.49 -0.41 1.41 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.90 22.03 29.54 -169.99 -5.02 17.00 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.00 0.00 7.81 -2.76 -0.02 -0.02 16 23 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.59 8.11 -51.93 -0.42 0.16 16 32 H 0.11 1.27 7.70 -51.93 -0.40 0.87 16 33 H 0.11 1.04 8.03 -51.92 -0.42 0.63 16 34 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 35 H 0.07 1.45 7.79 -51.93 -0.40 1.05 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.00 -0.06 7.70 -51.93 -0.40 -0.46 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.29 7.79 -51.93 -0.40 0.89 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -33.89 343.94 -7.97 -41.86 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -7.04 Total: -3.52 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 1.09 Total: -1.91 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.76 Total: -38.67 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.41 Total: -19.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.89 -7.97 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205257576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.697 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds