Wall clock time and date at job start Mon Mar 30 2020 01:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47033 * 239.99630 * 2 1 3 5 5 C 1.50708 * 109.46719 * 119.99900 * 2 1 3 6 6 O 1.20819 * 119.99855 * 359.97438 * 5 2 1 7 7 O 1.34229 * 119.99244 * 179.97438 * 5 2 1 8 8 C 1.45210 * 116.99285 * 180.02562 * 7 5 2 9 9 O 1.42897 * 109.46977 * 75.00457 * 8 7 5 10 10 C 1.42893 * 114.00314 * 74.99795 * 9 8 7 11 11 H 1.09005 * 110.64107 * 26.85860 * 10 9 8 12 12 C 1.55162 * 110.72112 * 149.99881 * 10 9 8 13 13 C 1.54907 * 101.58141 * 153.86693 * 12 10 9 14 14 N 1.47424 * 104.83241 * 322.98988 * 13 12 10 15 15 C 1.36943 * 125.64955 * 204.09232 * 14 13 12 16 16 H 1.08002 * 119.99788 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99622 * 0.30258 * 15 14 13 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48501 * 109.46896 * 89.99850 * 19 17 15 21 21 H 1.48499 * 109.47039 * 210.00011 * 19 17 15 22 22 H 1.48501 * 109.47275 * 329.99811 * 19 17 15 23 23 C 1.47024 * 108.70428 * 24.35838 * 14 13 12 24 24 H 1.09002 * 109.46742 * 300.00378 * 1 2 3 25 25 H 1.08997 * 109.46830 * 60.00161 * 1 2 3 26 26 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47323 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46961 * 299.99904 * 3 2 1 29 29 H 1.09005 * 109.47203 * 59.99327 * 3 2 1 30 30 H 1.09004 * 109.47234 * 300.00371 * 4 2 1 31 31 H 1.08997 * 109.47142 * 60.00400 * 4 2 1 32 32 H 1.09000 * 109.47027 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46986 * 315.00034 * 8 7 5 34 34 H 1.08996 * 109.46839 * 194.99936 * 8 7 5 35 35 H 1.08996 * 111.00324 * 35.78981 * 12 10 9 36 36 H 1.09001 * 111.00247 * 271.93692 * 12 10 9 37 37 H 1.09001 * 110.36805 * 204.15155 * 13 12 10 38 38 H 1.08999 * 110.36920 * 81.82885 * 13 12 10 39 39 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.88094 * 118.13011 * 23 14 13 41 41 H 1.09003 * 109.88256 * 239.30018 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 1.2471 -1.1691 2.0260 7 8 3.3520 -0.8335 1.4427 8 6 3.7636 -1.5302 2.6484 9 8 3.5639 -2.9349 2.4785 10 6 4.5322 -3.5619 1.6352 11 1 5.4728 -3.0113 1.6548 12 6 4.7521 -5.0392 2.0558 13 6 5.2237 -5.6747 0.7242 14 7 4.4309 -4.9982 -0.3185 15 6 4.1446 -5.5050 -1.5581 16 1 3.5534 -4.9282 -2.2539 17 6 4.6095 -6.7624 -1.9181 18 7 5.3300 -7.4653 -1.0702 19 14 4.2124 -7.4569 -3.6061 20 1 5.2747 -7.0625 -4.5660 21 1 4.1411 -8.9381 -3.5277 22 1 2.9058 -6.9222 -4.0666 23 6 4.0040 -3.6866 0.1905 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.1700 -1.1781 3.4920 34 1 4.8186 -1.3337 2.8392 35 1 3.8205 -5.4912 2.3962 36 1 5.5246 -5.1167 2.8209 37 1 5.0191 -6.7454 0.7214 38 1 6.2871 -5.4905 0.5715 39 1 5.6552 -8.3438 -1.3219 40 1 4.4233 -2.8941 -0.4294 41 1 2.9157 -3.6248 0.1891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205257880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:12 Heat of formation + Delta-G solvation = -118.599791 kcal Electronic energy + Delta-G solvation = -22225.311850 eV Core-core repulsion = 18913.009246 eV Total energy + Delta-G solvation = -3312.302604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65002 -38.41193 -36.77069 -35.71754 -35.32070 -32.15568 -29.24121 -27.62082 -27.48526 -27.15604 -26.22906 -24.37147 -23.11370 -20.49047 -20.19168 -19.41963 -17.57157 -17.08822 -16.67599 -16.64740 -15.48500 -14.92065 -14.75864 -14.40865 -14.10389 -13.93604 -13.61606 -13.22840 -12.52165 -12.44375 -12.32160 -12.28860 -11.92417 -11.78964 -11.75076 -11.59513 -11.32700 -11.10922 -11.02780 -11.01658 -10.91839 -10.75947 -10.30408 -10.15109 -10.09812 -9.78534 -9.54483 -9.45745 -8.64738 -6.83149 -5.64654 -3.06335 2.33675 2.78163 3.40837 3.45524 3.47826 3.87964 4.47349 4.50907 4.66363 4.70915 4.99572 5.07982 5.26537 5.35817 5.40717 5.47255 5.50440 5.51034 5.60888 5.72058 5.72401 5.77346 5.81303 5.83868 5.93544 6.14160 6.23971 6.28751 6.44893 6.53831 6.57655 6.64696 6.73613 7.44406 7.50047 7.62800 7.84534 7.88868 8.36021 9.22287 9.83136 10.47605 11.39630 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.005503 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.467753 B = 5086.870300 C = 6120.585066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.059 4.059 3 C -0.140 4.140 4 C -0.143 4.143 5 C 0.476 3.524 6 O -0.498 6.498 7 O -0.372 6.372 8 C 0.221 3.779 9 O -0.368 6.368 10 C 0.069 3.931 11 H 0.067 0.933 12 C -0.140 4.140 13 C 0.152 3.848 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.126 3.874 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.024 0.976 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 16.462 4.691 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.200 4.200 5 C 0.318 3.682 6 O -0.384 6.384 7 O -0.291 6.291 8 C 0.109 3.891 9 O -0.287 6.287 10 C 0.012 3.988 11 H 0.085 0.915 12 C -0.178 4.178 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.000 4.000 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.091 15.999 4.932 17.234 hybrid contribution 0.081 -0.261 -0.792 0.838 sum -4.010 15.738 4.140 16.760 Atomic orbital electron populations 1.21768 0.91548 1.03422 1.02284 1.20583 0.97287 0.96326 0.91862 1.21863 1.02245 0.92965 1.02642 1.21892 1.02536 1.00794 0.94794 1.23551 0.80777 0.76758 0.87148 1.90659 1.56588 1.44944 1.46240 1.86696 1.26229 1.69736 1.46462 1.24485 0.99700 0.79441 0.85474 1.88166 1.54093 1.19299 1.67092 1.23469 0.89640 0.94655 0.91066 0.91453 1.23196 1.01302 0.92956 1.00391 1.21968 0.92696 1.00423 0.82180 1.44404 1.61021 1.13779 1.13703 1.19074 1.27383 0.99084 0.89288 0.90498 1.24784 1.00213 0.97077 0.98603 1.69766 1.40568 1.12766 1.34132 0.86062 0.77885 0.78231 0.83277 1.21618 1.21607 1.20687 1.21627 0.97352 0.89478 0.91569 0.91931 0.91327 0.91491 0.91155 0.91075 0.92321 0.91514 0.91162 0.90977 0.88086 0.87888 0.91090 0.91881 0.87080 0.96792 0.93692 0.95824 0.95433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.76 37.16 0.29 -1.16 16 2 C -0.06 -0.70 0.96 -155.66 -0.15 -0.85 16 3 C -0.14 -1.26 8.41 37.16 0.31 -0.94 16 4 C -0.14 -1.74 8.41 37.16 0.31 -1.43 16 5 C 0.48 7.23 6.48 36.01 0.23 7.46 16 6 O -0.50 -8.99 15.42 -19.76 -0.30 -9.29 16 7 O -0.37 -5.49 10.01 -47.09 -0.47 -5.96 16 8 C 0.22 3.10 6.73 101.05 0.68 3.78 16 9 O -0.37 -6.69 10.19 -60.00 -0.61 -7.30 16 10 C 0.07 1.32 3.35 -24.89 -0.08 1.24 16 11 H 0.07 1.15 7.59 -51.93 -0.39 0.76 16 12 C -0.14 -2.84 6.81 -24.58 -0.17 -3.01 16 13 C 0.15 3.80 5.89 -2.53 -0.01 3.78 16 14 N -0.60 -16.01 3.39 -170.06 -0.58 -16.59 16 15 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 19 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.13 2.84 6.86 -3.06 -0.02 2.82 16 24 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.10 1.28 7.70 -51.93 -0.40 0.88 16 34 H 0.10 1.11 7.74 -51.93 -0.40 0.71 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.11 3.09 5.86 -51.93 -0.30 2.79 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -32.78 336.19 -7.18 -39.96 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.95 Total: -1.36 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 1.14 Total: 4.83 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.02 Total: -43.20 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.39 Total: -22.55 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.78 -7.18 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205257880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.643 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds