Wall clock time and date at job start Mon Mar 30 2020 01:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47033 * 239.99630 * 2 1 3 5 5 C 1.50708 * 109.46719 * 119.99900 * 2 1 3 6 6 O 1.20819 * 119.99855 * 359.97438 * 5 2 1 7 7 O 1.34229 * 119.99244 * 179.97438 * 5 2 1 8 8 C 1.45210 * 116.99285 * 180.02562 * 7 5 2 9 9 O 1.42897 * 109.46977 * 75.00457 * 8 7 5 10 10 C 1.42893 * 114.00314 * 74.99795 * 9 8 7 11 11 H 1.09005 * 110.64107 * 26.85860 * 10 9 8 12 12 C 1.55162 * 110.72112 * 149.99881 * 10 9 8 13 13 C 1.54907 * 101.58141 * 153.86693 * 12 10 9 14 14 N 1.47424 * 104.83241 * 322.98988 * 13 12 10 15 15 C 1.36943 * 125.64955 * 204.09232 * 14 13 12 16 16 H 1.08002 * 119.99788 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99622 * 0.30258 * 15 14 13 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48501 * 109.46896 * 89.99850 * 19 17 15 21 21 H 1.48499 * 109.47039 * 210.00011 * 19 17 15 22 22 H 1.48501 * 109.47275 * 329.99811 * 19 17 15 23 23 C 1.47024 * 108.70428 * 24.35838 * 14 13 12 24 24 H 1.09002 * 109.46742 * 300.00378 * 1 2 3 25 25 H 1.08997 * 109.46830 * 60.00161 * 1 2 3 26 26 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47323 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46961 * 299.99904 * 3 2 1 29 29 H 1.09005 * 109.47203 * 59.99327 * 3 2 1 30 30 H 1.09004 * 109.47234 * 300.00371 * 4 2 1 31 31 H 1.08997 * 109.47142 * 60.00400 * 4 2 1 32 32 H 1.09000 * 109.47027 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46986 * 315.00034 * 8 7 5 34 34 H 1.08996 * 109.46839 * 194.99936 * 8 7 5 35 35 H 1.08996 * 111.00324 * 35.78981 * 12 10 9 36 36 H 1.09001 * 111.00247 * 271.93692 * 12 10 9 37 37 H 1.09001 * 110.36805 * 204.15155 * 13 12 10 38 38 H 1.08999 * 110.36920 * 81.82885 * 13 12 10 39 39 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.88094 * 118.13011 * 23 14 13 41 41 H 1.09003 * 109.88256 * 239.30018 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 1.2471 -1.1691 2.0260 7 8 3.3520 -0.8335 1.4427 8 6 3.7636 -1.5302 2.6484 9 8 3.5639 -2.9349 2.4785 10 6 4.5322 -3.5619 1.6352 11 1 5.4728 -3.0113 1.6548 12 6 4.7521 -5.0392 2.0558 13 6 5.2237 -5.6747 0.7242 14 7 4.4309 -4.9982 -0.3185 15 6 4.1446 -5.5050 -1.5581 16 1 3.5534 -4.9282 -2.2539 17 6 4.6095 -6.7624 -1.9181 18 7 5.3300 -7.4653 -1.0702 19 14 4.2124 -7.4569 -3.6061 20 1 5.2747 -7.0625 -4.5660 21 1 4.1411 -8.9381 -3.5277 22 1 2.9058 -6.9222 -4.0666 23 6 4.0040 -3.6866 0.1905 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.1700 -1.1781 3.4920 34 1 4.8186 -1.3337 2.8392 35 1 3.8205 -5.4912 2.3962 36 1 5.5246 -5.1167 2.8209 37 1 5.0191 -6.7454 0.7214 38 1 6.2871 -5.4905 0.5715 39 1 5.6552 -8.3438 -1.3219 40 1 4.4233 -2.8941 -0.4294 41 1 2.9157 -3.6248 0.1891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205257880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:11 Heat of formation + Delta-G solvation = -138.406758 kcal Electronic energy + Delta-G solvation = -22226.170745 eV Core-core repulsion = 18913.009246 eV Total energy + Delta-G solvation = -3313.161499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82398 -39.91514 -38.17719 -36.83042 -36.76957 -34.17796 -31.17136 -29.16808 -28.29705 -28.26216 -27.51058 -26.30964 -24.24070 -22.14896 -22.03273 -20.59694 -19.03702 -18.82638 -17.97974 -17.74946 -17.05205 -16.54842 -16.35036 -15.81746 -15.53696 -15.05766 -14.80818 -14.65110 -14.31794 -13.81148 -13.63505 -13.40559 -13.25234 -13.11100 -12.97750 -12.88945 -12.75412 -12.66504 -12.56345 -12.30583 -12.06235 -12.03354 -12.00074 -11.88784 -11.79422 -11.37216 -11.35524 -10.95390 -10.77637 -8.94465 -7.80447 -5.25801 1.16183 1.45475 1.47915 1.56584 1.72911 2.43827 2.58591 3.30278 3.49291 3.65939 3.76071 3.79996 3.83085 3.94420 4.07276 4.11426 4.12746 4.30772 4.57734 4.64304 4.68867 4.72391 4.78949 4.85046 4.88865 4.90182 4.93750 4.95556 4.98902 5.12848 5.28376 5.31995 5.36868 5.41856 5.56873 5.74212 6.06758 6.27090 6.71370 7.07010 7.72747 8.36409 9.21787 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.005503 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.467753 B = 5086.870300 C = 6120.585066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.469 3.531 6 O -0.534 6.534 7 O -0.372 6.372 8 C 0.209 3.791 9 O -0.387 6.387 10 C 0.084 3.916 11 H 0.098 0.902 12 C -0.127 4.127 13 C 0.154 3.846 14 N -0.624 5.624 15 C -0.243 4.243 16 H 0.077 0.923 17 C -0.064 4.064 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.272 1.272 23 C 0.129 3.871 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.002 0.998 39 H 0.249 0.751 40 H 0.030 0.970 41 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 18.478 4.388 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C -0.191 4.191 4 C -0.197 4.197 5 C 0.313 3.687 6 O -0.423 6.423 7 O -0.291 6.291 8 C 0.098 3.902 9 O -0.305 6.305 10 C 0.027 3.973 11 H 0.116 0.884 12 C -0.166 4.166 13 C 0.029 3.971 14 N -0.351 5.351 15 C -0.371 4.371 16 H 0.095 0.905 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.810 3.190 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.197 1.197 23 C 0.003 3.997 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.020 0.980 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -3.831 18.052 4.637 19.028 hybrid contribution -0.023 -0.852 -0.670 1.084 sum -3.854 17.200 3.967 18.068 Atomic orbital electron populations 1.21783 0.90967 1.02268 1.03797 1.20756 0.97768 0.97753 0.89832 1.21864 1.02278 0.90738 1.04217 1.21875 1.01977 0.99463 0.96360 1.24372 0.80619 0.76062 0.87657 1.90638 1.57310 1.46576 1.47764 1.86715 1.26085 1.69493 1.46784 1.25006 1.02381 0.77316 0.85506 1.88145 1.54103 1.21782 1.66492 1.23255 0.90805 0.94512 0.88739 0.88381 1.23021 1.01605 0.93367 0.98601 1.21767 0.91998 0.98977 0.84376 1.44707 1.61237 1.15524 1.13651 1.19419 1.27626 0.99662 0.90423 0.90471 1.25645 1.00273 0.97331 1.02373 1.70011 1.41248 1.12752 1.35709 0.85032 0.78051 0.77068 0.78894 1.20871 1.21722 1.19676 1.21693 0.96000 0.87885 0.94146 0.91849 0.88347 0.93981 0.91099 0.88592 0.91678 0.94606 0.88241 0.91754 0.86923 0.83849 0.92431 0.88228 0.90418 0.97972 0.94098 0.95231 0.97693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 7.76 71.98 0.56 -2.15 16 2 C -0.06 -1.34 0.96 -52.92 -0.05 -1.39 16 3 C -0.13 -2.03 8.41 71.98 0.61 -1.43 16 4 C -0.14 -3.28 8.41 71.98 0.61 -2.68 16 5 C 0.47 13.98 6.48 71.24 0.46 14.44 16 6 O -0.53 -19.38 15.42 22.95 0.35 -19.02 16 7 O -0.37 -10.42 10.01 -43.92 -0.44 -10.86 16 8 C 0.21 5.37 6.73 113.37 0.76 6.14 16 9 O -0.39 -13.48 10.19 -125.30 -1.28 -14.76 16 10 C 0.08 3.11 3.35 31.79 0.11 3.21 16 11 H 0.10 3.03 7.59 -2.38 -0.02 3.01 16 12 C -0.13 -5.06 6.81 31.99 0.22 -4.84 16 13 C 0.15 7.78 5.89 86.85 0.51 8.29 16 14 N -0.62 -33.79 3.39 -691.96 -2.35 -36.13 16 15 C -0.24 -14.09 10.27 84.03 0.86 -13.22 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 17 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 18 N -0.95 -56.98 10.09 21.65 0.22 -56.76 16 19 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 C 0.13 5.81 6.86 86.73 0.60 6.40 16 24 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 27 H 0.07 1.08 8.11 -2.39 -0.02 1.06 16 28 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.11 2.64 7.70 -2.39 -0.02 2.62 16 34 H 0.14 2.51 7.74 -2.39 -0.02 2.49 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.08 4.47 5.86 -2.39 -0.01 4.46 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.01 0.25 8.05 -2.39 -0.02 0.23 16 Total: -1.00 -72.90 336.19 5.22 -67.67 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.99 Total: 12.07 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.70 Total: 9.57 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -2.13 Total: -92.89 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.36 Total: -44.64 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -72.90 5.22 -67.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205257880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.734 kcal (2) G-P(sol) polarization free energy of solvation -72.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds