Wall clock time and date at job start Mon Mar 30 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46783 * 2 1 4 4 C 1.52994 * 109.47084 * 239.99698 * 2 1 3 5 5 C 1.50699 * 109.46809 * 119.99680 * 2 1 3 6 6 O 1.20828 * 120.00583 * 0.02562 * 5 2 1 7 7 O 1.34227 * 119.99935 * 179.97438 * 5 2 1 8 8 C 1.45192 * 117.00423 * 180.02562 * 7 5 2 9 9 O 1.42901 * 109.47687 * 74.99863 * 8 7 5 10 10 C 1.42901 * 113.99754 * 74.99716 * 9 8 7 11 11 H 1.09002 * 110.89003 * 333.88885 * 10 9 8 12 12 C 1.55157 * 111.00406 * 210.00587 * 10 9 8 13 13 C 1.54330 * 102.94216 * 206.39148 * 12 10 9 14 14 N 1.47024 * 107.27024 * 22.18785 * 13 12 10 15 15 C 1.36934 * 125.64602 * 181.02080 * 14 13 12 16 16 H 1.07999 * 119.99808 * 185.23411 * 15 14 13 17 17 C 1.38812 * 120.00061 * 5.23969 * 15 14 13 18 18 N 1.31616 * 120.00266 * 352.94921 * 17 15 14 19 19 Si 1.86798 * 119.99789 * 172.94425 * 17 15 14 20 20 H 1.48497 * 109.47680 * 275.01041 * 19 17 15 21 21 H 1.48497 * 109.47264 * 35.01281 * 19 17 15 22 22 H 1.48501 * 109.46844 * 155.00924 * 19 17 15 23 23 C 1.47420 * 108.70353 * 1.29157 * 14 13 12 24 24 H 1.09004 * 109.47267 * 300.00189 * 1 2 3 25 25 H 1.08997 * 109.47421 * 59.99961 * 1 2 3 26 26 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46473 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46859 * 299.99750 * 3 2 1 29 29 H 1.08994 * 109.47264 * 59.99938 * 3 2 1 30 30 H 1.08999 * 109.47508 * 300.00681 * 4 2 1 31 31 H 1.09006 * 109.47221 * 60.00211 * 4 2 1 32 32 H 1.08994 * 109.47082 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47154 * 314.99796 * 8 7 5 34 34 H 1.09005 * 109.47770 * 195.00140 * 8 7 5 35 35 H 1.08996 * 110.71929 * 88.02596 * 12 10 9 36 36 H 1.09001 * 110.87063 * 324.82186 * 12 10 9 37 37 H 1.09000 * 109.87816 * 262.77979 * 13 12 10 38 38 H 1.08997 * 110.01127 * 141.68502 * 13 12 10 39 39 H 0.96999 * 120.00588 * 180.02562 * 18 17 15 40 40 H 1.09003 * 110.36644 * 94.47668 * 23 14 13 41 41 H 1.08995 * 110.36947 * 216.80156 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2471 -1.1699 2.0257 7 8 3.3519 -0.8335 1.4427 8 6 3.7636 -1.5300 2.6483 9 8 3.5639 -2.9348 2.4787 10 6 4.5322 -3.5618 1.6353 11 1 4.9523 -2.8471 0.9276 12 6 3.9201 -4.7814 0.8969 13 6 5.1484 -5.6775 0.6323 14 7 6.1828 -5.2988 1.6060 15 6 7.4353 -5.8454 1.6929 16 1 8.0952 -5.5580 2.4981 17 6 7.8569 -6.7688 0.7461 18 7 7.0096 -7.2235 -0.1526 19 14 9.6269 -7.3659 0.7472 20 1 10.4718 -6.4116 -0.0149 21 1 10.1185 -7.4546 2.1456 22 1 9.6975 -8.7062 0.1117 23 6 5.6460 -4.2378 2.4774 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7209 -1.2494 33 1 3.1701 -1.1779 3.4920 34 1 4.8187 -1.3335 2.8392 35 1 3.4588 -4.4725 -0.0411 36 1 3.1968 -5.2956 1.5298 37 1 5.5154 -5.5136 -0.3809 38 1 4.8807 -6.7258 0.7644 39 1 7.3040 -7.8690 -0.8140 40 1 5.2280 -4.6692 3.3870 41 1 6.4261 -3.5170 2.7222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205257881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:13 Heat of formation + Delta-G solvation = -140.230091 kcal Electronic energy + Delta-G solvation = -21738.860152 eV Core-core repulsion = 18425.619588 eV Total energy + Delta-G solvation = -3313.240564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.81797 -39.92649 -38.19610 -36.82495 -36.75748 -34.17862 -31.19653 -29.12953 -28.30685 -28.24618 -27.52745 -26.29655 -24.25537 -22.12911 -22.02167 -20.57592 -19.00987 -18.71094 -18.29387 -17.71596 -16.94563 -16.60562 -16.21388 -15.74171 -15.57038 -15.04246 -14.80868 -14.63296 -14.21951 -14.13643 -13.71901 -13.35773 -13.24760 -13.09085 -12.97189 -12.87166 -12.73579 -12.63704 -12.48844 -12.39212 -12.04952 -12.00972 -11.97072 -11.88561 -11.81836 -11.52970 -11.33771 -10.87539 -10.71018 -8.95931 -7.88383 -5.24934 1.15850 1.46960 1.49698 1.57689 1.70327 2.40748 2.58194 3.31032 3.48391 3.65494 3.72376 3.80037 3.85119 3.97413 4.07061 4.10711 4.12528 4.32928 4.51746 4.68036 4.69645 4.72209 4.82191 4.86013 4.90194 4.91766 4.92611 4.94766 4.98725 5.14639 5.30902 5.33600 5.37918 5.41809 5.56243 5.67742 6.01689 6.16922 6.70635 7.05350 7.71409 8.36600 9.22725 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.033803 B = 0.003878 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.134224 B = 7218.830381 C = 7412.218583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.466 3.534 6 O -0.532 6.532 7 O -0.373 6.373 8 C 0.213 3.787 9 O -0.383 6.383 10 C 0.086 3.914 11 H 0.085 0.915 12 C -0.128 4.128 13 C 0.188 3.812 14 N -0.625 5.625 15 C -0.250 4.250 16 H 0.086 0.914 17 C -0.062 4.062 18 N -0.950 5.950 19 Si 0.982 3.018 20 H -0.281 1.281 21 H -0.269 1.269 22 H -0.295 1.295 23 C 0.118 3.882 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.008 0.992 39 H 0.249 0.751 40 H 0.024 0.976 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 18.943 -0.978 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C -0.194 4.194 4 C -0.199 4.199 5 C 0.310 3.690 6 O -0.420 6.420 7 O -0.292 6.292 8 C 0.101 3.899 9 O -0.302 6.302 10 C 0.028 3.972 11 H 0.103 0.897 12 C -0.167 4.167 13 C 0.063 3.937 14 N -0.353 5.353 15 C -0.378 4.378 16 H 0.104 0.896 17 C -0.256 4.256 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.208 1.208 21 H -0.194 1.194 22 H -0.221 1.221 23 C -0.008 4.008 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.406 18.538 -0.707 21.270 hybrid contribution 0.971 -0.969 0.172 1.383 sum -9.435 17.568 -0.535 19.949 Atomic orbital electron populations 1.21787 0.90818 1.02567 1.03649 1.20769 0.97816 0.97500 0.89977 1.21882 1.02216 0.91184 1.04112 1.21899 1.02061 1.00011 0.95925 1.24486 0.80464 0.76176 0.87843 1.90652 1.57231 1.46475 1.47643 1.86713 1.26409 1.69415 1.46648 1.24836 1.01974 0.77481 0.85602 1.88111 1.52745 1.21633 1.67690 1.23288 0.88539 0.93915 0.91443 0.89657 1.22826 0.97910 0.95736 1.00195 1.20892 0.85743 0.94545 0.92488 1.44650 1.12223 1.42030 1.36377 1.19471 0.89730 1.19644 1.08969 0.89647 1.25718 1.02302 0.99904 0.97650 1.70180 1.34629 1.34366 1.20684 0.85045 0.79227 0.76783 0.77946 1.20772 1.19423 1.22118 1.22065 0.94848 0.90712 0.93168 0.92306 0.88355 0.93353 0.91271 0.88528 0.92041 0.93369 0.88247 0.91662 0.86810 0.84866 0.90046 0.91533 0.95838 0.97333 0.94183 0.95831 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.76 71.98 0.56 -1.61 16 2 C -0.06 -1.09 0.96 -52.93 -0.05 -1.14 16 3 C -0.14 -1.75 8.41 71.98 0.61 -1.15 16 4 C -0.14 -2.43 8.41 71.98 0.60 -1.82 16 5 C 0.47 12.35 6.48 71.24 0.46 12.81 16 6 O -0.53 -17.49 15.42 22.94 0.35 -17.14 16 7 O -0.37 -9.73 10.04 -43.90 -0.44 -10.17 16 8 C 0.21 5.51 6.63 113.37 0.75 6.27 16 9 O -0.38 -13.09 10.26 -125.28 -1.29 -14.38 16 10 C 0.09 3.19 3.42 32.06 0.11 3.30 16 11 H 0.09 3.01 7.72 -2.39 -0.02 2.99 16 12 C -0.13 -5.22 6.68 31.78 0.21 -5.01 16 13 C 0.19 9.69 5.39 86.73 0.47 10.16 16 14 N -0.62 -33.12 3.39 -691.55 -2.35 -35.47 16 15 C -0.25 -14.17 10.26 84.03 0.86 -13.31 16 16 H 0.09 4.59 7.84 -2.91 -0.02 4.57 16 17 C -0.06 -3.58 5.48 84.86 0.46 -3.11 16 18 N -0.95 -57.60 10.36 21.65 0.22 -57.37 16 19 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 C 0.12 5.00 6.98 86.93 0.61 5.60 16 24 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.07 0.93 8.12 -2.38 -0.02 0.91 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.11 2.70 7.70 -2.39 -0.02 2.68 16 34 H 0.13 2.73 8.03 -2.38 -0.02 2.71 16 35 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.02 1.32 7.30 -2.39 -0.02 1.30 16 38 H 0.01 0.49 7.60 -2.39 -0.02 0.47 16 39 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.28 337.41 5.17 -66.11 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.98 Total: 9.77 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.65 Total: 10.99 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -2.12 Total: -92.84 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.37 Total: -41.69 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.28 5.17 -66.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205257881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.116 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds