Wall clock time and date at job start Mon Mar 30 2020 00:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.63026 * 2 1 4 4 O 1.43743 * 109.63399 * 120.39630 * 2 1 3 5 5 C 1.44789 * 104.81895 * 95.56278 * 4 2 1 6 6 C 1.54917 * 101.71695 * 36.10407 * 5 4 2 7 7 H 1.09002 * 110.69264 * 82.83738 * 6 5 4 8 8 C 1.53002 * 110.69543 * 205.87180 * 6 5 4 9 9 O 1.42900 * 109.47135 * 182.62936 * 8 6 5 10 10 C 1.42901 * 113.99948 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.88599 * 327.56810 * 10 9 8 12 12 C 1.55161 * 111.00168 * 203.64625 * 10 9 8 13 13 C 1.54327 * 102.94112 * 206.42176 * 12 10 9 14 14 N 1.47022 * 107.27055 * 22.19221 * 13 12 10 15 15 C 1.36936 * 125.64582 * 181.02308 * 14 13 12 16 16 H 1.08001 * 119.99733 * 180.02562 * 15 14 13 17 17 C 1.38803 * 120.00411 * 0.04284 * 15 14 13 18 18 N 1.31627 * 119.99800 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00403 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47191 * 89.99973 * 19 17 15 21 21 H 1.48501 * 109.47380 * 209.99743 * 19 17 15 22 22 H 1.48496 * 109.47205 * 330.00034 * 19 17 15 23 23 C 1.47423 * 108.70382 * 1.05914 * 14 13 12 24 24 O 1.43373 * 109.62936 * 239.76135 * 2 1 3 25 25 H 1.08998 * 109.46521 * 301.05711 * 1 2 3 26 26 H 1.09008 * 109.46660 * 61.05458 * 1 2 3 27 27 H 1.08992 * 109.46951 * 181.05531 * 1 2 3 28 28 H 1.08993 * 109.47179 * 178.93912 * 3 2 1 29 29 H 1.08999 * 109.47261 * 298.94502 * 3 2 1 30 30 H 1.09005 * 109.46714 * 58.93892 * 3 2 1 31 31 H 1.09006 * 110.97574 * 278.00497 * 5 4 2 32 32 H 1.08996 * 111.01630 * 154.22842 * 5 4 2 33 33 H 1.09001 * 109.47116 * 302.62460 * 8 6 5 34 34 H 1.09002 * 109.47453 * 62.62384 * 8 6 5 35 35 H 1.08998 * 110.71725 * 324.78407 * 12 10 9 36 36 H 1.08993 * 110.72125 * 88.05653 * 12 10 9 37 37 H 1.09001 * 109.88239 * 262.77502 * 13 12 10 38 38 H 1.09001 * 109.88059 * 141.60712 * 13 12 10 39 39 H 0.96993 * 119.99711 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36746 * 217.03454 * 23 14 13 41 41 H 1.09005 * 110.46361 * 94.76127 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0441 1.4411 0.0000 4 8 2.0130 -0.6850 1.1678 5 6 2.2653 -2.0401 0.7244 6 6 2.7885 -1.8078 -0.7151 7 1 3.8509 -1.5642 -0.7042 8 6 2.5260 -3.0350 -1.5904 9 8 3.0723 -2.8169 -2.8927 10 6 2.8801 -3.9090 -3.7941 11 1 2.8905 -4.8595 -3.2607 12 6 3.9442 -3.8921 -4.9232 13 6 3.2289 -4.6163 -6.0831 14 7 1.7831 -4.5118 -5.8375 15 6 0.7989 -5.0434 -6.6274 16 1 -0.2389 -4.9104 -6.3599 17 6 1.1352 -5.7534 -7.7717 18 7 2.4001 -5.9153 -8.0979 19 14 -0.2073 -6.4792 -8.8489 20 1 -0.6041 -5.4877 -9.8809 21 1 0.2997 -7.7075 -9.5117 22 1 -1.3849 -6.8192 -8.0106 23 6 1.5684 -3.7392 -4.6004 24 8 2.0117 -0.6801 -1.1667 25 1 -0.3632 0.5302 0.8804 26 1 -0.3633 0.4974 -0.8994 27 1 -0.3633 -1.0274 0.0189 28 1 3.1338 1.4381 0.0190 29 1 1.6977 1.9504 -0.8993 30 1 1.6667 1.9614 0.8804 31 1 1.3457 -2.6253 0.7156 32 1 3.0243 -2.5189 1.3430 33 1 2.9967 -3.9093 -1.1408 34 1 1.4518 -3.2014 -1.6702 35 1 4.1935 -2.8685 -5.2028 36 1 4.8372 -4.4384 -4.6197 37 1 3.5263 -5.6647 -6.1052 38 1 3.4796 -4.1376 -7.0297 39 1 2.6350 -6.4117 -8.8973 40 1 0.7246 -4.1442 -4.0418 41 1 1.3990 -2.6876 -4.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206378100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:35 Heat of formation + Delta-G solvation = -108.500499 kcal Electronic energy + Delta-G solvation = -21535.731546 eV Core-core repulsion = 18223.866880 eV Total energy + Delta-G solvation = -3311.864666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79726 -38.32174 -36.05337 -35.04892 -33.40940 -32.12495 -30.01709 -29.06345 -27.65212 -27.09931 -25.57745 -24.18032 -22.00171 -21.32545 -20.26124 -20.02651 -17.78195 -16.95536 -16.63425 -16.45535 -15.62164 -15.05616 -14.74877 -14.55071 -14.25302 -13.78805 -13.67149 -13.25081 -13.06657 -12.76777 -12.47954 -12.38256 -12.33090 -12.17848 -12.00946 -11.87069 -11.58449 -11.30333 -10.95656 -10.89481 -10.70364 -10.34185 -10.19131 -10.08919 -9.77615 -9.76185 -9.69846 -9.09902 -8.58600 -6.82113 -5.69937 -3.03850 3.15308 3.41299 3.45730 3.47915 3.62511 3.74885 4.46685 4.52740 4.60814 4.65775 4.80129 4.93378 5.08602 5.17167 5.26784 5.35780 5.38289 5.43612 5.49726 5.51230 5.51771 5.60827 5.69173 5.77089 5.81103 5.87549 5.91193 5.98260 6.28550 6.48563 6.55381 6.69922 6.76314 6.97599 7.56611 7.59997 7.63268 7.83626 8.26846 9.22968 9.83058 10.49018 11.41869 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.003604 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.628294 B = 7766.352036 C = 8159.477930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.245 3.755 3 C -0.153 4.153 4 O -0.373 6.373 5 C 0.024 3.976 6 C 0.056 3.944 7 H 0.093 0.907 8 C 0.065 3.935 9 O -0.370 6.370 10 C 0.072 3.928 11 H 0.066 0.934 12 C -0.137 4.137 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.119 3.881 24 O -0.360 6.360 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.035 0.965 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 9.036 18.547 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.168 3.832 3 C -0.210 4.210 4 O -0.294 6.294 5 C -0.053 4.053 6 C -0.002 4.002 7 H 0.111 0.889 8 C -0.012 4.012 9 O -0.289 6.289 10 C 0.013 3.987 11 H 0.084 0.916 12 C -0.175 4.175 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.008 4.008 24 O -0.281 6.281 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.958 9.238 18.296 20.518 hybrid contribution -0.829 -0.785 -0.540 1.263 sum 0.129 8.453 17.756 19.666 Atomic orbital electron populations 1.22371 0.93827 1.03361 1.03277 1.23446 0.93062 0.91624 0.75032 1.22061 1.02459 0.93402 1.03118 1.89236 1.86065 1.21713 1.32392 1.24309 1.01694 0.85204 0.94090 1.23777 0.97248 0.86808 0.92329 0.88947 1.22494 0.98934 0.94795 0.84998 1.87930 1.78547 1.41727 1.20670 1.23445 0.97649 0.87935 0.89641 0.91616 1.22978 0.97072 1.01515 0.95955 1.21172 0.82331 0.98112 0.92987 1.44363 1.02530 1.62197 1.24154 1.19070 0.87167 1.26913 1.02477 0.90419 1.24810 0.96488 1.00795 0.98390 1.69960 1.14646 1.45734 1.26701 0.86096 0.80617 0.78418 0.80491 1.21563 1.21656 1.20708 1.21919 0.94597 0.95715 0.88561 1.89057 1.69197 1.41403 1.28456 0.90830 0.90480 0.91821 0.91454 0.90303 0.90928 0.90378 0.87052 0.91886 0.92397 0.91420 0.91839 0.93348 0.93552 0.93727 0.94635 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.20 37.16 0.34 -1.35 16 2 C 0.24 2.81 1.47 -26.73 -0.04 2.77 16 3 C -0.15 -1.48 9.24 37.16 0.34 -1.14 16 4 O -0.37 -4.25 11.01 -59.04 -0.65 -4.90 16 5 C 0.02 0.22 7.36 38.17 0.28 0.50 16 6 C 0.06 0.67 3.97 -25.72 -0.10 0.57 16 7 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 8 C 0.07 0.86 5.57 37.16 0.21 1.06 16 9 O -0.37 -6.42 10.15 -35.28 -0.36 -6.78 16 10 C 0.07 1.36 3.49 -24.58 -0.09 1.27 16 11 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 12 C -0.14 -2.73 6.69 -24.89 -0.17 -2.90 16 13 C 0.18 4.48 5.37 -3.06 -0.02 4.46 16 14 N -0.60 -16.08 3.39 -170.07 -0.58 -16.66 16 15 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.12 2.64 6.97 -2.53 -0.02 2.62 16 24 O -0.36 -5.09 10.57 -60.24 -0.64 -5.72 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 38 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 39 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -32.48 332.33 -8.23 -40.72 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.06 Total: -2.95 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 0.49 Total: 0.84 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.01 Total: -43.53 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.64 Total: -17.40 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.48 -8.23 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206378100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.785 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds