Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.63026 * 2 1 4 4 O 1.43743 * 109.63399 * 120.39630 * 2 1 3 5 5 C 1.44789 * 104.81895 * 95.56278 * 4 2 1 6 6 C 1.54917 * 101.71695 * 36.10407 * 5 4 2 7 7 H 1.09002 * 110.69264 * 82.83738 * 6 5 4 8 8 C 1.53002 * 110.69543 * 205.87180 * 6 5 4 9 9 O 1.42900 * 109.47135 * 182.62936 * 8 6 5 10 10 C 1.42901 * 113.99948 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.88599 * 327.56810 * 10 9 8 12 12 C 1.55161 * 111.00168 * 203.64625 * 10 9 8 13 13 C 1.54327 * 102.94112 * 206.42176 * 12 10 9 14 14 N 1.47022 * 107.27055 * 22.19221 * 13 12 10 15 15 C 1.36936 * 125.64582 * 181.02308 * 14 13 12 16 16 H 1.08001 * 119.99733 * 180.02562 * 15 14 13 17 17 C 1.38803 * 120.00411 * 0.04284 * 15 14 13 18 18 N 1.31627 * 119.99800 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00403 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47191 * 89.99973 * 19 17 15 21 21 H 1.48501 * 109.47380 * 209.99743 * 19 17 15 22 22 H 1.48496 * 109.47205 * 330.00034 * 19 17 15 23 23 C 1.47423 * 108.70382 * 1.05914 * 14 13 12 24 24 O 1.43373 * 109.62936 * 239.76135 * 2 1 3 25 25 H 1.08998 * 109.46521 * 301.05711 * 1 2 3 26 26 H 1.09008 * 109.46660 * 61.05458 * 1 2 3 27 27 H 1.08992 * 109.46951 * 181.05531 * 1 2 3 28 28 H 1.08993 * 109.47179 * 178.93912 * 3 2 1 29 29 H 1.08999 * 109.47261 * 298.94502 * 3 2 1 30 30 H 1.09005 * 109.46714 * 58.93892 * 3 2 1 31 31 H 1.09006 * 110.97574 * 278.00497 * 5 4 2 32 32 H 1.08996 * 111.01630 * 154.22842 * 5 4 2 33 33 H 1.09001 * 109.47116 * 302.62460 * 8 6 5 34 34 H 1.09002 * 109.47453 * 62.62384 * 8 6 5 35 35 H 1.08998 * 110.71725 * 324.78407 * 12 10 9 36 36 H 1.08993 * 110.72125 * 88.05653 * 12 10 9 37 37 H 1.09001 * 109.88239 * 262.77502 * 13 12 10 38 38 H 1.09001 * 109.88059 * 141.60712 * 13 12 10 39 39 H 0.96993 * 119.99711 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36746 * 217.03454 * 23 14 13 41 41 H 1.09005 * 110.46361 * 94.76127 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0441 1.4411 0.0000 4 8 2.0130 -0.6850 1.1678 5 6 2.2653 -2.0401 0.7244 6 6 2.7885 -1.8078 -0.7151 7 1 3.8509 -1.5642 -0.7042 8 6 2.5260 -3.0350 -1.5904 9 8 3.0723 -2.8169 -2.8927 10 6 2.8801 -3.9090 -3.7941 11 1 2.8905 -4.8595 -3.2607 12 6 3.9442 -3.8921 -4.9232 13 6 3.2289 -4.6163 -6.0831 14 7 1.7831 -4.5118 -5.8375 15 6 0.7989 -5.0434 -6.6274 16 1 -0.2389 -4.9104 -6.3599 17 6 1.1352 -5.7534 -7.7717 18 7 2.4001 -5.9153 -8.0979 19 14 -0.2073 -6.4792 -8.8489 20 1 -0.6041 -5.4877 -9.8809 21 1 0.2997 -7.7075 -9.5117 22 1 -1.3849 -6.8192 -8.0106 23 6 1.5684 -3.7392 -4.6004 24 8 2.0117 -0.6801 -1.1667 25 1 -0.3632 0.5302 0.8804 26 1 -0.3633 0.4974 -0.8994 27 1 -0.3633 -1.0274 0.0189 28 1 3.1338 1.4381 0.0190 29 1 1.6977 1.9504 -0.8993 30 1 1.6667 1.9614 0.8804 31 1 1.3457 -2.6253 0.7156 32 1 3.0243 -2.5189 1.3430 33 1 2.9967 -3.9093 -1.1408 34 1 1.4518 -3.2014 -1.6702 35 1 4.1935 -2.8685 -5.2028 36 1 4.8372 -4.4384 -4.6197 37 1 3.5263 -5.6647 -6.1052 38 1 3.4796 -4.1376 -7.0297 39 1 2.6350 -6.4117 -8.8973 40 1 0.7246 -4.1442 -4.0418 41 1 1.3990 -2.6876 -4.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206378100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -130.103621 kcal Electronic energy + Delta-G solvation = -21536.668328 eV Core-core repulsion = 18223.866880 eV Total energy + Delta-G solvation = -3312.801448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65705 -39.85475 -37.64267 -36.00434 -34.49792 -33.91016 -31.34272 -30.64288 -28.86566 -28.38942 -26.79674 -25.93861 -22.95055 -22.21159 -22.01981 -21.77593 -19.00596 -18.65582 -17.90110 -17.38788 -16.75081 -16.59807 -16.22204 -15.83418 -15.67992 -15.12198 -14.71858 -14.50283 -14.33836 -14.02354 -13.87878 -13.59374 -13.52700 -13.21747 -13.09236 -12.99062 -12.93996 -12.74747 -12.62664 -12.36286 -12.25050 -12.03260 -11.92029 -11.77483 -11.46360 -11.15283 -10.73670 -10.64637 -10.51395 -8.94930 -7.87244 -5.24593 1.45758 1.48361 1.57040 2.34099 2.39426 2.54478 2.93200 3.31257 3.58356 3.71049 3.79334 3.82325 3.86383 3.96719 4.00875 4.09775 4.17239 4.35195 4.36030 4.45350 4.56017 4.62600 4.65859 4.71669 4.75799 4.76502 4.87199 4.93995 4.98854 5.02641 5.05827 5.14099 5.22290 5.41405 5.61061 5.70777 6.11988 6.14566 6.30005 7.06811 7.72431 8.37200 9.23237 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.003604 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.628294 B = 7766.352036 C = 8159.477930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.236 3.764 3 C -0.152 4.152 4 O -0.383 6.383 5 C 0.028 3.972 6 C 0.052 3.948 7 H 0.093 0.907 8 C 0.058 3.942 9 O -0.383 6.383 10 C 0.092 3.908 11 H 0.085 0.915 12 C -0.125 4.125 13 C 0.186 3.814 14 N -0.626 5.626 15 C -0.249 4.249 16 H 0.082 0.918 17 C -0.064 4.064 18 N -0.951 5.951 19 Si 0.983 3.017 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.115 3.885 24 O -0.391 6.391 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.023 0.977 38 H 0.009 0.991 39 H 0.249 0.751 40 H 0.044 0.956 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 8.914 20.460 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.159 3.841 3 C -0.210 4.210 4 O -0.304 6.304 5 C -0.048 4.048 6 C -0.005 4.005 7 H 0.111 0.889 8 C -0.018 4.018 9 O -0.302 6.302 10 C 0.033 3.967 11 H 0.103 0.897 12 C -0.163 4.163 13 C 0.061 3.939 14 N -0.354 5.354 15 C -0.378 4.378 16 H 0.100 0.900 17 C -0.257 4.257 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.192 1.192 23 C -0.011 4.011 24 O -0.313 6.313 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.511 9.137 20.250 22.221 hybrid contribution -0.708 -0.688 -1.087 1.468 sum -0.196 8.449 19.162 20.943 Atomic orbital electron populations 1.22373 0.92971 1.03384 1.03947 1.23687 0.93803 0.92080 0.74492 1.22077 1.02154 0.92764 1.03967 1.89222 1.86140 1.22664 1.32336 1.24464 1.02975 0.84655 0.92738 1.23880 0.97266 0.85894 0.93495 0.88870 1.22799 0.98947 0.96765 0.83335 1.87911 1.78764 1.41193 1.22300 1.23099 0.94677 0.89266 0.89612 0.89747 1.22810 0.97876 1.01166 0.94445 1.20930 0.82477 0.96804 0.93673 1.44672 1.02822 1.62418 1.25472 1.19474 0.88029 1.27061 1.03205 0.90015 1.25700 0.98813 1.01442 0.99753 1.70178 1.16542 1.46299 1.26910 0.85021 0.78204 0.77246 0.78485 1.21351 1.21709 1.19195 1.22048 0.97101 0.94241 0.87697 1.89031 1.69674 1.42373 1.30257 0.89153 0.90771 0.92165 0.91968 0.90272 0.89234 0.89368 0.84167 0.88717 0.92711 0.91396 0.88897 0.95924 0.97278 0.94193 0.93765 0.96685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.20 71.98 0.66 -2.46 16 2 C 0.24 5.08 1.47 30.60 0.04 5.12 16 3 C -0.15 -2.77 9.24 71.98 0.66 -2.11 16 4 O -0.38 -7.88 11.01 -126.22 -1.39 -9.27 16 5 C 0.03 0.44 7.36 72.64 0.53 0.98 16 6 C 0.05 1.14 3.97 31.25 0.12 1.26 16 7 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 8 C 0.06 1.38 5.57 71.98 0.40 1.78 16 9 O -0.38 -12.55 10.15 -148.94 -1.51 -14.06 16 10 C 0.09 3.33 3.49 31.99 0.11 3.44 16 11 H 0.08 2.77 7.90 -2.39 -0.02 2.75 16 12 C -0.12 -4.87 6.69 31.79 0.21 -4.65 16 13 C 0.19 9.53 5.37 86.73 0.47 10.00 16 14 N -0.63 -33.75 3.39 -691.99 -2.35 -36.10 16 15 C -0.25 -14.41 10.28 84.03 0.86 -13.54 16 16 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 17 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 18 N -0.95 -57.91 10.31 21.65 0.22 -57.68 16 19 Si 0.98 46.21 29.55 68.60 2.03 48.23 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 C 0.11 5.08 6.97 86.85 0.61 5.68 16 24 O -0.39 -10.67 10.57 -125.06 -1.32 -12.00 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.09 1.24 8.05 -2.38 -0.02 1.22 16 32 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.67 8.11 -2.39 -0.02 1.65 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.02 1.26 7.38 -2.39 -0.02 1.24 16 38 H 0.01 0.52 7.51 -2.39 -0.02 0.50 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -70.86 332.33 1.82 -69.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.98 Total: 9.57 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.16 Total: 2.26 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -2.13 Total: -93.78 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -4.22 Total: -35.32 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.86 1.82 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206378100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.063 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds