Wall clock time and date at job start Mon Mar 30 2020 00:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.62950 * 2 1 4 4 O 1.43748 * 109.63118 * 120.39588 * 2 1 3 5 5 C 1.44784 * 104.81620 * 95.56626 * 4 2 1 6 6 C 1.54914 * 101.72117 * 36.10059 * 5 4 2 7 7 H 1.09003 * 110.69273 * 83.01230 * 6 5 4 8 8 C 1.53000 * 110.69177 * 206.03907 * 6 5 4 9 9 O 1.42903 * 109.46855 * 182.62338 * 8 6 5 10 10 C 1.42902 * 113.99865 * 180.02562 * 9 8 6 11 11 C 1.53515 * 114.16632 * 210.00141 * 10 9 8 12 12 N 1.47486 * 87.93048 * 220.13986 * 11 10 9 13 13 C 1.46898 * 110.99952 * 138.70741 * 12 11 10 14 14 C 1.50696 * 109.47016 * 169.99989 * 13 12 11 15 15 H 1.08002 * 120.00465 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00073 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00170 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46978 * 59.99914 * 18 16 14 20 20 H 1.48496 * 109.46985 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47095 * 299.99929 * 18 16 14 22 22 C 1.47480 * 87.83684 * 27.00978 * 12 11 10 23 23 O 1.43642 * 109.73308 * 239.85838 * 2 1 3 24 24 H 1.09001 * 109.46946 * 301.05946 * 1 2 3 25 25 H 1.09006 * 109.47311 * 61.05702 * 1 2 3 26 26 H 1.08999 * 109.47205 * 181.05864 * 1 2 3 27 27 H 1.08997 * 109.47240 * 178.93718 * 3 2 1 28 28 H 1.08997 * 109.46953 * 298.93930 * 3 2 1 29 29 H 1.09002 * 109.46768 * 58.94045 * 3 2 1 30 30 H 1.09000 * 110.97786 * 277.99007 * 5 4 2 31 31 H 1.08999 * 110.98075 * 154.21465 * 5 4 2 32 32 H 1.09003 * 109.47368 * 62.63175 * 8 6 5 33 33 H 1.08996 * 109.47897 * 302.62575 * 8 6 5 34 34 H 1.08994 * 113.25708 * 342.95075 * 10 9 8 35 35 H 1.09005 * 113.47774 * 105.37435 * 11 10 9 36 36 H 1.08997 * 113.53532 * 334.91590 * 11 10 9 37 37 H 1.09001 * 109.47059 * 289.99916 * 13 12 11 38 38 H 1.09005 * 109.47423 * 49.99805 * 13 12 11 39 39 H 0.97002 * 120.00032 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.47310 * 87.75367 * 22 12 11 41 41 H 1.08990 * 113.48150 * 218.22188 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0129 -0.6851 1.1678 5 6 2.2652 -2.0400 0.7244 6 6 2.7884 -1.8078 -0.7151 7 1 3.8515 -1.5672 -0.7044 8 6 2.5222 -3.0335 -1.5913 9 8 3.0684 -2.8155 -2.8938 10 6 2.8728 -3.9062 -3.7960 11 6 3.9753 -4.0519 -4.8543 12 7 2.9193 -4.3710 -5.8333 13 6 3.1782 -3.7121 -7.1204 14 6 2.2278 -4.2486 -8.1595 15 1 1.5035 -5.0033 -7.8906 16 6 2.2821 -3.7754 -9.4534 17 7 3.1637 -2.8561 -9.7808 18 14 1.1034 -4.4399 -10.7413 19 1 -0.2945 -4.1703 -10.3190 20 1 1.3652 -3.7740 -12.0424 21 1 1.3030 -5.9043 -10.8863 22 6 1.9919 -3.5742 -5.0086 23 8 2.0150 -0.6789 -1.1692 24 1 -0.3633 0.5302 0.8804 25 1 -0.3634 0.4973 -0.8994 26 1 -0.3633 -1.0275 0.0190 27 1 3.1338 1.4382 0.0191 28 1 1.6977 1.9503 -0.8993 29 1 1.6666 1.9614 0.8804 30 1 1.3457 -2.6254 0.7158 31 1 3.0244 -2.5182 1.3433 32 1 1.4474 -3.1968 -1.6709 33 1 2.9906 -3.9095 -1.1429 34 1 2.6095 -4.8375 -3.2948 35 1 4.6546 -4.8825 -4.6622 36 1 4.4988 -3.1202 -5.0685 37 1 3.0316 -2.6372 -7.0143 38 1 4.2045 -3.9100 -7.4300 39 1 3.2021 -2.5234 -10.6912 40 1 1.9854 -2.5143 -5.2634 41 1 0.9903 -3.9996 -4.9472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206382862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:30 Heat of formation + Delta-G solvation = -96.029886 kcal Electronic energy + Delta-G solvation = -21102.411564 eV Core-core repulsion = 17791.087664 eV Total energy + Delta-G solvation = -3311.323900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86148 -39.49721 -36.77265 -35.13617 -33.45064 -32.78206 -30.17404 -28.95795 -27.69183 -25.91381 -25.36099 -24.72761 -22.10876 -21.56878 -21.33833 -19.38520 -17.85396 -16.93085 -16.66180 -16.20944 -15.81928 -15.28132 -15.14257 -14.62534 -14.39490 -14.06662 -13.77118 -13.53403 -13.14985 -12.95074 -12.75009 -12.44964 -12.37896 -12.14480 -12.12865 -11.99117 -11.92014 -11.32282 -11.22549 -11.12579 -10.81627 -10.55009 -10.41898 -10.17064 -9.85877 -9.72004 -9.22248 -9.14741 -8.41253 -7.90815 -6.01086 -4.02583 3.08032 3.35433 3.38734 3.41881 3.48160 3.67245 4.38156 4.45136 4.52420 4.57205 4.72328 4.80464 4.86304 4.98757 5.01970 5.13009 5.14613 5.25229 5.32266 5.34001 5.39016 5.44492 5.46061 5.61539 5.74374 5.84151 5.89584 5.93404 6.10924 6.18433 6.35776 6.41329 6.61389 6.89292 7.22179 7.40177 7.66683 7.87279 8.12121 8.46863 9.04198 9.61139 11.10051 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.003225 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.795821 B = 8678.848701 C = 9071.212358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.245 3.755 3 C -0.154 4.154 4 O -0.372 6.372 5 C 0.024 3.976 6 C 0.054 3.946 7 H 0.094 0.906 8 C 0.065 3.935 9 O -0.366 6.366 10 C 0.051 3.949 11 C -0.003 4.003 12 N -0.464 5.464 13 C 0.161 3.839 14 C -0.506 4.506 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.003 4.003 23 O -0.360 6.360 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.006 0.994 38 H 0.030 0.970 39 H 0.262 0.738 40 H 0.072 0.928 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 3.590 23.176 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.168 3.832 3 C -0.211 4.211 4 O -0.293 6.293 5 C -0.052 4.052 6 C -0.004 4.004 7 H 0.112 0.888 8 C -0.013 4.013 9 O -0.284 6.284 10 C -0.007 4.007 11 C -0.132 4.132 12 N -0.189 5.189 13 C 0.035 3.965 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.133 4.133 23 O -0.281 6.281 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.023 0.977 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.322 3.351 22.743 23.106 hybrid contribution -0.505 0.243 -0.696 0.893 sum -2.827 3.593 22.048 22.517 Atomic orbital electron populations 1.22365 0.93756 1.03297 1.03377 1.23503 0.93055 0.91678 0.74949 1.22065 1.02527 0.93320 1.03188 1.89246 1.86068 1.21664 1.32317 1.24301 1.01633 0.85285 0.94007 1.23784 0.97472 0.86793 0.92337 0.88846 1.22544 0.98775 0.95098 0.84853 1.88016 1.78416 1.41143 1.20786 1.24043 0.98744 0.89284 0.88662 1.24048 0.96045 1.00749 0.92349 1.68955 1.03997 1.43659 1.02265 1.20258 0.97769 0.92781 0.85659 1.21060 1.17673 1.22341 0.93390 0.91916 1.25012 0.95984 0.95155 0.98584 1.69951 1.35390 1.29199 1.19396 0.86518 0.81180 0.79106 0.80352 1.20245 1.21325 1.20154 1.24226 0.98334 0.98533 0.92194 1.89122 1.69249 1.41328 1.28431 0.90754 0.90441 0.91879 0.91404 0.90241 0.90882 0.90421 0.87023 0.92362 0.91697 0.88869 0.90355 0.91231 0.97652 0.95240 0.92836 0.90961 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.20 37.16 0.34 -1.22 16 2 C 0.24 2.66 1.47 -26.73 -0.04 2.62 16 3 C -0.15 -1.44 9.23 37.16 0.34 -1.10 16 4 O -0.37 -3.97 11.01 -59.01 -0.65 -4.62 16 5 C 0.02 0.20 7.36 38.17 0.28 0.49 16 6 C 0.05 0.59 3.97 -25.72 -0.10 0.49 16 7 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 8 C 0.06 0.73 5.52 37.16 0.21 0.94 16 9 O -0.37 -5.75 10.40 -35.32 -0.37 -6.12 16 10 C 0.05 0.83 4.65 -26.20 -0.12 0.70 16 11 C 0.00 -0.05 7.52 -7.53 -0.06 -0.10 16 12 N -0.46 -10.49 6.32 -246.08 -1.55 -12.05 16 13 C 0.16 4.38 4.57 -4.98 -0.02 4.35 16 14 C -0.51 -14.81 9.39 -34.44 -0.32 -15.13 16 15 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 18 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.00 -0.07 7.56 -7.54 -0.06 -0.12 16 23 O -0.36 -4.82 10.59 -60.34 -0.64 -5.46 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 37 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 38 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -33.04 338.82 -9.08 -42.12 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.04 Total: -2.82 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.35 Total: -6.63 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.82 Total: -38.69 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.66 Total: -16.20 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.04 -9.08 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206382862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.909 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds