Wall clock time and date at job start Mon Mar 30 2020 00:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.62950 * 2 1 4 4 O 1.43748 * 109.63118 * 120.39588 * 2 1 3 5 5 C 1.44784 * 104.81620 * 95.56626 * 4 2 1 6 6 C 1.54914 * 101.72117 * 36.10059 * 5 4 2 7 7 H 1.09003 * 110.69273 * 83.01230 * 6 5 4 8 8 C 1.53000 * 110.69177 * 206.03907 * 6 5 4 9 9 O 1.42903 * 109.46855 * 182.62338 * 8 6 5 10 10 C 1.42902 * 113.99865 * 180.02562 * 9 8 6 11 11 C 1.53515 * 114.16632 * 210.00141 * 10 9 8 12 12 N 1.47486 * 87.93048 * 220.13986 * 11 10 9 13 13 C 1.46898 * 110.99952 * 138.70741 * 12 11 10 14 14 C 1.50696 * 109.47016 * 169.99989 * 13 12 11 15 15 H 1.08002 * 120.00465 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00073 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00170 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46978 * 59.99914 * 18 16 14 20 20 H 1.48496 * 109.46985 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47095 * 299.99929 * 18 16 14 22 22 C 1.47480 * 87.83684 * 27.00978 * 12 11 10 23 23 O 1.43642 * 109.73308 * 239.85838 * 2 1 3 24 24 H 1.09001 * 109.46946 * 301.05946 * 1 2 3 25 25 H 1.09006 * 109.47311 * 61.05702 * 1 2 3 26 26 H 1.08999 * 109.47205 * 181.05864 * 1 2 3 27 27 H 1.08997 * 109.47240 * 178.93718 * 3 2 1 28 28 H 1.08997 * 109.46953 * 298.93930 * 3 2 1 29 29 H 1.09002 * 109.46768 * 58.94045 * 3 2 1 30 30 H 1.09000 * 110.97786 * 277.99007 * 5 4 2 31 31 H 1.08999 * 110.98075 * 154.21465 * 5 4 2 32 32 H 1.09003 * 109.47368 * 62.63175 * 8 6 5 33 33 H 1.08996 * 109.47897 * 302.62575 * 8 6 5 34 34 H 1.08994 * 113.25708 * 342.95075 * 10 9 8 35 35 H 1.09005 * 113.47774 * 105.37435 * 11 10 9 36 36 H 1.08997 * 113.53532 * 334.91590 * 11 10 9 37 37 H 1.09001 * 109.47059 * 289.99916 * 13 12 11 38 38 H 1.09005 * 109.47423 * 49.99805 * 13 12 11 39 39 H 0.97002 * 120.00032 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.47310 * 87.75367 * 22 12 11 41 41 H 1.08990 * 113.48150 * 218.22188 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0129 -0.6851 1.1678 5 6 2.2652 -2.0400 0.7244 6 6 2.7884 -1.8078 -0.7151 7 1 3.8515 -1.5672 -0.7044 8 6 2.5222 -3.0335 -1.5913 9 8 3.0684 -2.8155 -2.8938 10 6 2.8728 -3.9062 -3.7960 11 6 3.9753 -4.0519 -4.8543 12 7 2.9193 -4.3710 -5.8333 13 6 3.1782 -3.7121 -7.1204 14 6 2.2278 -4.2486 -8.1595 15 1 1.5035 -5.0033 -7.8906 16 6 2.2821 -3.7754 -9.4534 17 7 3.1637 -2.8561 -9.7808 18 14 1.1034 -4.4399 -10.7413 19 1 -0.2945 -4.1703 -10.3190 20 1 1.3652 -3.7740 -12.0424 21 1 1.3030 -5.9043 -10.8863 22 6 1.9919 -3.5742 -5.0086 23 8 2.0150 -0.6789 -1.1692 24 1 -0.3633 0.5302 0.8804 25 1 -0.3634 0.4973 -0.8994 26 1 -0.3633 -1.0275 0.0190 27 1 3.1338 1.4382 0.0191 28 1 1.6977 1.9503 -0.8993 29 1 1.6666 1.9614 0.8804 30 1 1.3457 -2.6254 0.7158 31 1 3.0244 -2.5182 1.3433 32 1 1.4474 -3.1968 -1.6709 33 1 2.9906 -3.9095 -1.1429 34 1 2.6095 -4.8375 -3.2948 35 1 4.6546 -4.8825 -4.6622 36 1 4.4988 -3.1202 -5.0685 37 1 3.0316 -2.6372 -7.0143 38 1 4.2045 -3.9100 -7.4300 39 1 3.2021 -2.5234 -10.6912 40 1 1.9854 -2.5143 -5.2634 41 1 0.9903 -3.9996 -4.9472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206382862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:30 Heat of formation + Delta-G solvation = -121.296873 kcal Electronic energy + Delta-G solvation = -21103.507223 eV Core-core repulsion = 17791.087664 eV Total energy + Delta-G solvation = -3312.419558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66877 -41.01647 -38.02259 -36.00665 -35.04352 -34.17655 -31.40188 -30.53671 -28.41700 -27.29636 -26.88514 -26.18035 -23.44979 -22.94195 -22.16048 -20.92000 -18.78578 -18.54002 -17.97516 -17.45021 -17.02592 -16.46503 -16.38016 -16.14778 -15.76078 -15.26720 -14.81911 -14.69533 -14.35895 -14.12738 -13.96460 -13.70796 -13.60944 -13.34974 -13.14952 -13.11041 -12.95324 -12.81489 -12.62962 -12.51918 -12.24529 -12.22552 -11.99931 -11.62364 -11.23702 -11.16327 -10.66737 -10.64117 -10.43891 -9.77831 -8.24990 -6.36609 1.38901 1.43269 1.51462 2.33158 2.36568 2.45319 2.91711 3.06872 3.37447 3.44133 3.63832 3.73203 3.82162 3.92402 3.99044 4.06441 4.31879 4.36292 4.39502 4.45275 4.50393 4.57757 4.63994 4.65104 4.70535 4.73899 4.75097 4.85040 4.85227 4.92002 4.98948 5.04140 5.12891 5.20426 5.52861 5.71697 6.02572 6.11020 6.25652 6.37346 6.77176 7.33088 8.86507 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.003225 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.795821 B = 8678.848701 C = 9071.212358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.236 3.764 3 C -0.154 4.154 4 O -0.383 6.383 5 C 0.029 3.971 6 C 0.046 3.954 7 H 0.088 0.912 8 C 0.058 3.942 9 O -0.388 6.388 10 C 0.086 3.914 11 C -0.009 4.009 12 N -0.477 5.477 13 C 0.177 3.823 14 C -0.530 4.530 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.976 3.024 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.013 4.013 23 O -0.393 6.393 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.051 0.949 37 H -0.026 1.026 38 H 0.003 0.997 39 H 0.266 0.734 40 H 0.045 0.955 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 2.159 24.756 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.160 3.840 3 C -0.212 4.212 4 O -0.304 6.304 5 C -0.047 4.047 6 C -0.011 4.011 7 H 0.106 0.894 8 C -0.018 4.018 9 O -0.307 6.307 10 C 0.027 3.973 11 C -0.138 4.138 12 N -0.201 5.201 13 C 0.049 3.951 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.800 3.200 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.142 4.142 23 O -0.315 6.315 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.070 0.930 37 H -0.008 1.008 38 H 0.021 0.979 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.424 1.916 24.357 24.671 hybrid contribution -0.121 0.736 -1.096 1.326 sum -3.545 2.652 23.261 23.679 Atomic orbital electron populations 1.22356 0.92695 1.03577 1.03911 1.23717 0.93905 0.91924 0.74495 1.22088 1.02067 0.93078 1.03918 1.89227 1.86166 1.22829 1.32213 1.24477 1.03098 0.84599 0.92520 1.23929 0.97152 0.86154 0.93853 0.89425 1.22868 0.99318 0.96699 0.82924 1.87993 1.78711 1.41244 1.22727 1.23727 0.95019 0.90630 0.87883 1.24122 0.96413 1.00863 0.92373 1.68841 1.06535 1.43435 1.01252 1.19909 0.95889 0.91144 0.88108 1.21401 1.18235 1.22699 0.94490 0.91964 1.26019 0.97741 0.95163 1.00984 1.70086 1.37023 1.30310 1.20164 0.85340 0.78793 0.78764 0.77149 1.19175 1.20549 1.19012 1.24272 0.99207 0.96715 0.94029 1.89098 1.69745 1.42458 1.30218 0.89194 0.90874 0.91768 0.92172 0.90436 0.89188 0.88904 0.84239 0.91834 0.88043 0.85114 0.87899 0.93039 1.00804 0.97937 0.92503 0.93668 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.20 71.98 0.66 -2.22 16 2 C 0.24 4.90 1.47 30.59 0.04 4.94 16 3 C -0.15 -2.83 9.23 71.98 0.66 -2.17 16 4 O -0.38 -7.47 11.01 -126.24 -1.39 -8.86 16 5 C 0.03 0.41 7.36 72.64 0.53 0.94 16 6 C 0.05 0.94 3.97 31.25 0.12 1.07 16 7 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 8 C 0.06 1.17 5.52 71.98 0.40 1.57 16 9 O -0.39 -11.70 10.40 -148.90 -1.55 -13.24 16 10 C 0.09 2.64 4.65 30.94 0.14 2.78 16 11 C -0.01 -0.32 7.52 83.58 0.63 0.31 16 12 N -0.48 -21.81 6.32 -932.86 -5.89 -27.70 16 13 C 0.18 10.00 4.57 85.56 0.39 10.39 16 14 C -0.53 -31.68 9.39 25.60 0.24 -31.44 16 15 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 18 Si 0.98 45.44 29.54 68.60 2.03 47.46 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 C -0.01 -0.51 7.56 83.58 0.63 0.12 16 23 O -0.39 -10.37 10.59 -124.98 -1.32 -11.69 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.03 8.04 -2.39 -0.02 1.01 16 31 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.13 3.10 7.88 -2.39 -0.02 3.08 16 35 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 36 H 0.05 2.09 7.91 -2.39 -0.02 2.07 16 37 H -0.03 -1.59 7.30 -2.39 -0.02 -1.60 16 38 H 0.00 0.15 8.08 -2.38 -0.02 0.13 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.04 2.04 7.42 -2.38 -0.02 2.02 16 41 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -73.39 338.82 -1.93 -75.32 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.98 Total: 9.98 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 4.93 Total: -13.30 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -5.61 Total: -85.67 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -4.26 Total: -33.80 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -73.39 -1.93 -75.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206382862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.974 kcal (2) G-P(sol) polarization free energy of solvation -73.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds