Wall clock time and date at job start Mon Mar 30 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 H 1.08994 * 109.47303 * 305.64294 * 3 2 1 5 5 C 1.50699 * 109.47261 * 185.64330 * 3 2 1 6 6 H 1.08002 * 120.00372 * 240.00256 * 5 3 2 7 7 C 1.37885 * 119.99996 * 60.00170 * 5 3 2 8 8 N 1.31511 * 119.99591 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00064 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47389 * 90.00028 * 9 7 5 11 11 H 1.48503 * 109.47178 * 210.00074 * 9 7 5 12 12 H 1.48501 * 109.47193 * 330.00191 * 9 7 5 13 13 N 1.46897 * 109.46888 * 65.64829 * 3 2 1 14 14 C 1.46904 * 111.00076 * 204.34673 * 13 3 2 15 15 H 1.09006 * 109.51728 * 326.00532 * 14 13 3 16 16 C 1.53173 * 109.51899 * 86.18068 * 14 13 3 17 17 O 1.42915 * 109.35217 * 176.85251 * 16 14 13 18 18 C 1.42900 * 114.19720 * 298.49842 * 17 16 14 19 19 C 1.53168 * 109.37138 * 61.49475 * 18 17 16 20 20 C 1.52773 * 109.52343 * 205.88042 * 14 13 3 21 21 O 1.43951 * 109.86754 * 63.00439 * 20 14 13 22 22 C 1.44914 * 103.21543 * 201.98364 * 21 20 14 23 23 C 1.54479 * 102.95684 * 36.10830 * 22 21 20 24 24 O 1.43373 * 110.13921 * 305.71133 * 20 14 13 25 25 H 1.09000 * 109.46890 * 53.71611 * 1 2 3 26 26 H 1.08995 * 109.47359 * 173.71692 * 1 2 3 27 27 H 1.08998 * 109.47097 * 293.71590 * 1 2 3 28 28 H 1.09007 * 109.46860 * 240.00235 * 2 1 3 29 29 H 1.08999 * 109.47248 * 120.00626 * 2 1 3 30 30 H 0.97005 * 119.99513 * 179.97438 * 8 7 5 31 31 H 1.00904 * 111.00003 * 328.29509 * 13 3 2 32 32 H 1.08997 * 109.49294 * 296.81814 * 16 14 13 33 33 H 1.09000 * 109.48983 * 56.86839 * 16 14 13 34 34 H 1.09000 * 109.49130 * 181.46343 * 18 17 16 35 35 H 1.09002 * 109.48941 * 301.49910 * 18 17 16 36 36 H 1.08997 * 109.51994 * 183.17513 * 19 18 17 37 37 H 1.08998 * 109.51985 * 62.98580 * 19 18 17 38 38 H 1.08992 * 110.71880 * 277.73908 * 22 21 20 39 39 H 1.09000 * 110.71697 * 154.47482 * 22 21 20 40 40 H 1.08998 * 110.32590 * 97.16510 * 23 22 21 41 41 H 1.09002 * 110.32135 * 219.36485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1541 1.8864 0.6316 7 6 4.1302 0.8830 -1.2523 8 7 3.3831 0.3448 -2.1913 9 14 5.9901 0.8852 -1.4252 10 1 6.5456 -0.3492 -0.8144 11 1 6.3535 0.9321 -2.8643 12 1 6.5501 2.0745 -0.7343 13 7 1.6648 2.0944 1.2618 14 6 1.5993 3.5532 1.1014 15 1 2.3562 3.8753 0.3862 16 6 0.2103 3.9503 0.5923 17 8 0.1263 5.3744 0.5074 18 6 0.2932 6.0465 1.7574 19 6 1.6856 5.7398 2.3172 20 6 1.8511 4.2268 2.4493 21 8 3.1797 3.9184 2.9097 22 6 3.0931 4.1344 4.3401 23 6 1.6662 3.6486 4.6780 24 8 0.9438 3.7147 3.4343 25 1 -0.3633 0.6082 -0.8284 26 1 -0.3634 -1.0214 -0.1125 27 1 -0.3633 0.4133 0.9409 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7979 -0.0501 -2.9743 31 1 0.7915 1.7296 1.6116 32 1 0.0471 3.5169 -0.3944 33 1 -0.5489 3.5813 1.2818 34 1 0.1897 7.1214 1.6091 35 1 -0.4656 5.7017 2.4599 36 1 1.7949 6.2051 3.2968 37 1 2.4447 6.1314 1.6401 38 1 3.2069 5.1919 4.5780 39 1 3.8383 3.5375 4.8659 40 1 1.6926 2.6231 5.0463 41 1 1.2079 4.3054 5.4173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:16 Heat of formation + Delta-G solvation = -130.438332 kcal Electronic energy + Delta-G solvation = -23125.004362 eV Core-core repulsion = 19812.188401 eV Total energy + Delta-G solvation = -3312.815962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72791 -38.12715 -36.16183 -34.62712 -32.88318 -31.80125 -31.20360 -29.21759 -27.95437 -25.99840 -23.90616 -23.29405 -22.88972 -22.15532 -19.89345 -19.43406 -16.90158 -16.50316 -16.28677 -15.89454 -15.81363 -15.38520 -14.88582 -14.60499 -14.08207 -13.80438 -13.34403 -13.26053 -13.14878 -12.72437 -12.41087 -12.15674 -11.89358 -11.85754 -11.63886 -11.34711 -11.14305 -10.92837 -10.81661 -10.55915 -10.46322 -9.92014 -9.90605 -9.85377 -9.68047 -9.56243 -9.10159 -8.97751 -8.28506 -7.15352 -5.90405 -3.93246 3.37606 3.43591 3.49321 3.74751 4.00057 4.23569 4.51307 4.69658 4.82004 4.90170 4.98947 5.08020 5.34553 5.36751 5.37886 5.45442 5.55780 5.62946 5.70282 5.76697 5.80144 5.85548 6.01815 6.18811 6.19627 6.25244 6.35899 6.45293 6.52433 6.87451 7.10448 7.19762 7.31134 7.34962 7.54301 7.82174 8.00840 8.30743 8.44118 8.80891 9.16671 9.71396 11.15080 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.007041 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.489428 B = 3975.827951 C = 4396.879028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.488 4.488 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.660 5.660 14 C 0.078 3.922 15 H 0.107 0.893 16 C 0.039 3.961 17 O -0.383 6.383 18 C 0.070 3.930 19 C -0.188 4.188 20 C 0.268 3.732 21 O -0.336 6.336 22 C 0.011 3.989 23 C 0.026 3.974 24 O -0.371 6.371 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.258 0.742 31 H 0.322 0.678 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 8.660 11.327 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.292 5.292 14 C -0.034 4.034 15 H 0.125 0.875 16 C -0.039 4.039 17 O -0.300 6.300 18 C -0.008 4.008 19 C -0.227 4.227 20 C 0.190 3.810 21 O -0.255 6.255 22 C -0.067 4.067 23 C -0.051 4.051 24 O -0.292 6.292 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.102 8.536 11.032 14.853 hybrid contribution 0.369 0.028 -0.102 0.384 sum -4.733 8.564 10.930 14.670 Atomic orbital electron populations 1.21894 0.99636 0.99793 0.99500 1.21762 0.91174 1.00304 1.03121 1.19232 0.95681 0.89981 0.83972 0.97989 1.21256 0.91231 1.36079 1.04146 0.91724 1.24951 0.97989 0.95780 0.95896 1.69873 1.34572 1.39779 1.09611 0.86557 0.86023 0.78366 0.76802 1.20893 1.21537 1.19969 1.60598 1.35682 1.00007 1.32960 1.22053 0.97071 0.91707 0.92616 0.87536 1.23529 0.97127 0.80676 1.02595 1.87898 1.92896 1.19128 1.30105 1.22432 0.94698 0.97321 0.86305 1.23008 1.00289 0.96671 1.02708 1.23386 0.76248 0.90772 0.90584 1.89638 1.28805 1.88714 1.18309 1.24172 0.97725 1.00694 0.84063 1.23849 0.91474 1.02196 0.87590 1.88808 1.36165 1.86119 1.18135 0.93875 0.94368 0.94609 0.88168 0.94042 0.93191 0.85989 0.88298 0.92881 0.88969 0.92763 0.90721 0.89204 0.91800 0.88013 0.90036 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.63 37.16 0.36 -2.57 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.42 1.85 -68.87 -0.13 5.29 16 4 H 0.00 0.07 7.23 -51.93 -0.38 -0.31 16 5 C -0.49 -13.64 8.47 -34.44 -0.29 -13.93 16 6 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.71 11.29 55.43 0.63 -25.09 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.66 -14.25 5.76 -100.98 -0.58 -14.83 16 14 C 0.08 1.53 1.98 -67.74 -0.13 1.40 16 15 H 0.11 2.43 7.61 -51.93 -0.39 2.03 16 16 C 0.04 0.69 5.98 37.25 0.22 0.91 16 17 O -0.38 -6.44 10.75 -35.23 -0.38 -6.82 16 18 C 0.07 0.94 6.73 37.24 0.25 1.19 16 19 C -0.19 -2.65 5.27 -26.76 -0.14 -2.79 16 20 C 0.27 4.58 0.77 -26.96 -0.02 4.56 16 21 O -0.34 -6.22 11.15 -59.27 -0.66 -6.88 16 22 C 0.01 0.14 7.34 37.93 0.28 0.42 16 23 C 0.03 0.32 8.06 37.93 0.31 0.63 16 24 O -0.37 -5.94 9.95 -59.27 -0.59 -6.53 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.63 6.67 -51.93 -0.35 0.28 16 28 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.32 6.51 6.28 -39.29 -0.25 6.26 16 32 H 0.10 1.81 7.55 -51.93 -0.39 1.42 16 33 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.07 0.87 7.22 -51.93 -0.37 0.50 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 0.68 7.49 -51.93 -0.39 0.29 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -30.41 319.53 -7.90 -38.32 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.58 Total: 6.62 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 0.46 Total: -6.58 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.04 Total: -39.92 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.63 Total: -20.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.41 -7.90 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.123 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds