Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46728 * 2 1 4 4 H 1.09002 * 109.47186 * 54.21861 * 3 2 1 5 5 C 1.50704 * 109.46614 * 174.21540 * 3 2 1 6 6 H 1.08005 * 119.99791 * 120.00685 * 5 3 2 7 7 C 1.37875 * 120.00390 * 299.99675 * 5 3 2 8 8 N 1.31508 * 120.00423 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99578 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47562 * 89.99671 * 9 7 5 11 11 H 1.48508 * 109.46779 * 209.99755 * 9 7 5 12 12 H 1.48504 * 109.47187 * 329.99587 * 9 7 5 13 13 N 1.46899 * 109.47381 * 294.21524 * 3 2 1 14 14 C 1.46895 * 110.99961 * 150.98434 * 13 3 2 15 15 H 1.08997 * 109.52870 * 327.12738 * 14 13 3 16 16 C 1.53118 * 109.53068 * 87.27042 * 14 13 3 17 17 O 1.42907 * 109.39633 * 177.12324 * 16 14 13 18 18 C 1.42906 * 114.22358 * 298.77083 * 17 16 14 19 19 C 1.53116 * 109.39416 * 61.30229 * 18 17 16 20 20 C 1.53071 * 109.13026 * 302.68932 * 19 18 17 21 21 O 1.43613 * 109.52083 * 176.66928 * 20 19 18 22 22 C 1.44814 * 104.78638 * 95.76349 * 21 20 19 23 23 C 1.54926 * 101.73986 * 35.97127 * 22 21 20 24 24 O 1.43260 * 109.66921 * 296.17503 * 20 19 18 25 25 H 1.09001 * 109.47225 * 296.46303 * 1 2 3 26 26 H 1.08993 * 109.47355 * 56.47220 * 1 2 3 27 27 H 1.09007 * 109.46656 * 176.47160 * 1 2 3 28 28 H 1.09006 * 109.46727 * 240.00095 * 2 1 3 29 29 H 1.08997 * 109.47133 * 120.00020 * 2 1 3 30 30 H 0.97000 * 119.99976 * 180.02562 * 8 7 5 31 31 H 1.00904 * 110.99864 * 27.02595 * 13 3 2 32 32 H 1.09005 * 109.48151 * 297.17101 * 16 14 13 33 33 H 1.08997 * 109.48598 * 57.21635 * 16 14 13 34 34 H 1.09002 * 109.48256 * 301.32606 * 18 17 16 35 35 H 1.08997 * 109.49561 * 181.28732 * 18 17 16 36 36 H 1.09000 * 109.52931 * 182.79112 * 19 18 17 37 37 H 1.09006 * 109.58735 * 62.61651 * 19 18 17 38 38 H 1.09000 * 110.97678 * 277.85938 * 22 21 20 39 39 H 1.09004 * 110.97743 * 154.08012 * 22 21 20 40 40 H 1.09005 * 110.69286 * 206.11543 * 23 22 21 41 41 H 1.08993 * 110.70052 * 82.90594 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5945 1.9854 0.8337 5 6 3.5402 1.4449 0.1432 6 1 4.1554 1.8861 -0.6271 7 6 4.1273 0.8841 1.2576 8 7 5.4364 0.8866 1.3828 9 14 3.0630 0.1207 2.5896 10 1 2.8460 -1.3167 2.2867 11 1 3.7435 0.2526 3.9030 12 1 1.7536 0.8195 2.6381 13 7 1.6676 2.0936 -1.2631 14 6 1.4936 3.5404 -1.0783 15 1 1.1063 3.7360 -0.0783 16 6 2.8422 4.2445 -1.2517 17 8 2.6582 5.6571 -1.1378 18 6 1.7886 6.2165 -2.1242 19 6 0.3961 5.5952 -1.9856 20 6 0.5093 4.0748 -2.1218 21 8 -0.7802 3.4771 -1.9156 22 6 -1.3217 3.2982 -3.2467 23 6 -0.0519 2.9376 -4.0578 24 8 0.9716 3.7415 -3.4361 25 1 -0.3634 0.4579 0.9200 26 1 -0.3634 0.5676 -0.8566 27 1 -0.3633 -1.0258 -0.0633 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 5.8494 0.4918 2.1666 31 1 0.8360 1.6762 -1.6536 32 1 3.5323 3.9032 -0.4800 33 1 3.2509 4.0102 -2.2346 34 1 2.1834 6.0061 -3.1182 35 1 1.7216 7.2949 -1.9805 36 1 -0.2557 5.9836 -2.7682 37 1 -0.0193 5.8436 -1.0089 38 1 -1.7695 4.2220 -3.6132 39 1 -2.0432 2.4814 -3.2679 40 1 -0.1735 3.2119 -5.1057 41 1 0.1791 1.8769 -3.9604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = -121.658447 kcal Electronic energy + Delta-G solvation = -23284.450772 eV Core-core repulsion = 19972.015535 eV Total energy + Delta-G solvation = -3312.435237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91180 -38.02573 -36.44806 -34.91905 -32.89277 -31.97679 -31.59700 -29.25403 -27.99677 -26.78919 -23.89912 -23.27771 -22.83980 -22.23254 -19.91170 -19.72197 -17.28969 -16.77970 -16.72485 -15.99377 -15.62029 -15.45478 -14.95791 -14.48546 -14.12087 -14.01136 -13.64454 -13.49868 -12.93730 -12.90753 -12.68907 -12.50360 -12.31986 -11.98439 -11.76029 -11.67978 -11.56914 -11.13552 -10.97727 -10.59332 -10.38719 -10.15335 -10.05493 -9.95900 -9.51742 -9.39485 -9.13985 -9.05614 -8.48671 -7.41203 -6.01554 -3.98402 3.27602 3.39410 3.40648 3.41156 3.92395 4.25336 4.43543 4.52017 4.71248 4.77614 4.90529 5.08357 5.13230 5.23548 5.27069 5.38701 5.48472 5.64943 5.72950 5.75950 5.80050 5.81666 5.84978 5.91072 5.98313 6.00359 6.14043 6.48345 6.51569 6.62558 6.68182 6.80483 6.88781 7.13002 7.20742 7.59549 7.74464 7.98748 8.24329 8.76397 9.09646 9.61497 11.11243 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.007467 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.626735 B = 3749.117591 C = 4556.339758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.188 3.812 4 H 0.004 0.996 5 C -0.496 4.496 6 H 0.085 0.915 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.656 5.656 14 C 0.070 3.930 15 H 0.058 0.942 16 C 0.075 3.925 17 O -0.386 6.386 18 C 0.066 3.934 19 C -0.170 4.170 20 C 0.252 3.748 21 O -0.370 6.370 22 C 0.013 3.987 23 C 0.021 3.979 24 O -0.359 6.359 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.325 0.675 32 H 0.125 0.875 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 6.135 -9.520 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.079 3.921 4 H 0.021 0.979 5 C -0.535 4.535 6 H 0.103 0.897 7 C -0.133 4.133 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.290 5.290 14 C -0.041 4.041 15 H 0.076 0.924 16 C -0.001 4.001 17 O -0.304 6.304 18 C -0.011 4.011 19 C -0.209 4.209 20 C 0.175 3.825 21 O -0.291 6.291 22 C -0.063 4.063 23 C -0.056 4.056 24 O -0.279 6.279 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.887 6.269 -9.353 17.113 hybrid contribution -1.792 -0.779 0.953 2.174 sum -14.680 5.489 -8.399 17.781 Atomic orbital electron populations 1.21906 0.98147 1.00330 1.00948 1.22141 0.92987 1.00471 1.01808 1.19771 0.97080 0.89361 0.85868 0.97868 1.21058 0.88989 1.37613 1.05816 0.89692 1.24950 0.94725 0.95947 0.97719 1.69878 1.08930 1.45726 1.29177 0.86976 0.80878 0.79714 0.81353 1.20689 1.22495 1.19327 1.60458 1.38992 0.99851 1.29709 1.22344 0.94738 0.91438 0.95577 0.92381 1.22863 0.95794 0.77387 1.04096 1.87948 1.66049 1.23074 1.53304 1.22421 0.88117 0.97637 0.92959 1.22815 0.99981 0.94421 1.03670 1.23624 0.82051 0.92052 0.84764 1.89274 1.31033 1.82385 1.26376 1.24377 0.97306 1.02063 0.82595 1.24185 0.86125 0.97289 0.97974 1.88929 1.41750 1.70444 1.26822 0.93611 0.93156 0.93679 0.91419 0.92714 0.92729 0.85567 0.85728 0.92093 0.92604 0.89177 0.90676 0.89519 0.91059 0.87607 0.88684 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.81 37.16 0.36 -2.39 16 2 C -0.14 -2.94 4.98 -26.73 -0.13 -3.07 16 3 C 0.19 4.42 1.62 -68.86 -0.11 4.31 16 4 H 0.00 0.10 6.39 -51.93 -0.33 -0.24 16 5 C -0.50 -13.74 8.03 -34.44 -0.28 -14.02 16 6 H 0.09 2.57 7.29 -52.48 -0.38 2.18 16 7 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.88 22.03 24.41 -169.99 -4.15 17.88 16 10 H -0.28 -6.82 6.82 56.52 0.39 -6.44 16 11 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 13 N -0.66 -13.61 5.96 -100.85 -0.60 -14.22 16 14 C 0.07 1.37 2.20 -67.62 -0.15 1.22 16 15 H 0.06 1.23 7.35 -51.93 -0.38 0.84 16 16 C 0.08 1.52 5.83 37.22 0.22 1.74 16 17 O -0.39 -7.13 10.76 -35.23 -0.38 -7.51 16 18 C 0.07 0.95 6.71 37.22 0.25 1.20 16 19 C -0.17 -2.35 5.49 -26.63 -0.15 -2.49 16 20 C 0.25 4.01 0.58 -26.66 -0.02 3.99 16 21 O -0.37 -5.56 10.31 -59.03 -0.61 -6.17 16 22 C 0.01 0.14 7.92 38.17 0.30 0.44 16 23 C 0.02 0.24 7.88 38.17 0.30 0.54 16 24 O -0.36 -5.55 9.72 -59.03 -0.57 -6.12 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.33 6.18 5.31 -39.29 -0.21 5.97 16 32 H 0.12 2.90 6.39 -51.93 -0.33 2.57 16 33 H 0.06 1.25 7.86 -51.93 -0.41 0.84 16 34 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -31.22 309.86 -6.73 -37.95 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.36 Total: 6.82 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.51 Total: -6.68 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.17 Total: -40.84 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.56 Total: -19.79 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.22 -6.73 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.711 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds